Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001548

Physical Location & Seq

Genomic Coordinates Reverse (-)

21023594 .. 21026246

Gene Structure 2653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19240.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGACTAGTCGGGTGGTTACTCTATGGTATCGACCTCCCGAGCTCCTTCTTGGGGCTACTGATTACGGTGTGGGTGTGGACCTCTGGAGTGCAGGTTGCATTTTAGCGGAGTTACTAGCTGGGAAGCCTATCATGCCTGGTCGTACCGAGGTGGAGCAACTACATAAGATATACAAATTATGTGGTTCACCTTCAGATGAATACTGGAGGAAAGCAAAGTTGCCCAATGCAACGCTATTTAGGCCTCGGGAGCCTTACAGAAGATCCATAAGAGAGACATTCAAAGATTTTCCCCCAACTTCATTTCCCCTTATCGAAACTCTTCTTGCAATTGATCCAGCAGAACGTCAGACAGCCACAGCTGCATTGAGTAGTGTGTTTTTCCTGTCAGAGCCTTATGCATGTGAACCTTCTAGCCTCCCGAAGTATCCTCCAACCAAAGAAATAGACGCCAAACGCCGGGACGATGAAGCTCGTAGACTACGAGCTGCTGGTAGATCCCAGGCTGATGGTCCAAAGAAAACACGCACACGGGAACGGGCTCCTAGGAGTGGTATGCCGGCTCCAGAAGCCAATGCGGAGCTTCAGTCCAATATTGATAGAAGGCGCCTAATTACGCATGCAAATGCAAAGAGCAAAAGCGAAAAGTTTCCTCCACCACATCAGGATGGGGCAGTTGGCTACCCCTTGGGATCTTCACATCATTTTGATCCTGCCCTTGTTCCTCCTGATGTCCCTTTCAGTACAACCTCATTCAGTTATCCTAAAGAATCACTACAGGCTTGGTCAGGTCCGTTGGTTGACCCTGCTTCTGCCGGTGGTCCAAGACGGAAGAAACATACTGGACACGATGGGCGAGAAACTTCAAAATCCTATACAGGAAACCTTAGAGAGAAACATGACAATGCTCGTGTTAAGGGAAAGAGAAGTGCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

313

Amino Acids

34.64

Weight (kDa)

9.7

Isoelectric Point (pI)

63.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54610 AT1G54610 AT1G54610 AT3G05050 AT3G05050 AT3G05050
fragaria_vesca	FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100
malus_domestica	MD02G1048200.v1.1 MD04G1216500.v1.1 MD12G1233100.v1.1 MD13G1173900.v1.1 MD16G1175000.v1.1
prunus_persica	Prupe.1G142100_v2.0.a1 Prupe.1G142100_v2.0.a1 Prupe.6G336200_v2.0.a1 Prupe.6G336200_v2.0.a1
pyrus_communis	pycom04g19240 pycom12g21560
rosa_chinensis	RchiOBHm_Chr3g0452651 RchiOBHm_Chr4g0420991
rosa_laevigata	RLG00000007715 RLG00000025575
rosa_multiflora	Rmu_sc0006508.1_g000002 Rmu_ssc0000156.1_g000011
rosa_roxburghii	Rroxscaffold_5G00363340 Rroxscaffold_6G00429690
rosa_rugosa	Rorug02G0642200 Rorug02G0642300 Rorug02G0642300 Rorug02G0642400 Rorug04G0167500 Rorug04G0167500
rosa_samantha	Rh3AG044600 Rh3BG046900 Rh3CG045400 Rh3DG045800 Rh4AG229000 Rh4BG232000 Rh4CG243600 Rh4DG227400
rosa_wichuraiana	Rw3G003480 Rw4G019800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	478
AciI	CCGC	3 cut(s)	107, 578, 932
AclWI	GGATC	5 cut(s)	258, 329, 492, 700, 704
AcuI	CTGAAG	2 cut(s)	177, 569
AcyI	GRCGYC	2 cut(s)	450, 607
AfaI	GTAC	2 cut(s)	145, 745
AfiI	CCNNNNNNNGG	3 cut(s)	52, 459, 551
AgsI	TTSAA	2 cut(s)	283, 867
AhlI	ACTAGT	1 cut(s)	5
AjnI	CCWGG	2 cut(s)	136, 501
AluBI	AGCT	6 cut(s)	43, 119, 362, 473, 488, 583
AluI	AGCT	6 cut(s)	43, 119, 362, 473, 488, 583
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	5 cut(s)	258, 329, 492, 700, 704
Ama87I	CYCGRG	2 cut(s)	38, 246
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	362, 488
Asp700I	GAANNNNTTC	2 cut(s)	321, 648
AspA2I	CCTAGG	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	4 cut(s)	79, 512, 791, 821
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	180
AvaI	CYCGRG	2 cut(s)	38, 246
AvaII	GGWCC	4 cut(s)	79, 512, 791, 821
AvrII	CCTAGG	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	606
BanII	GRGCYC	2 cut(s)	45, 544
BauI	CACGAG	1 cut(s)	909
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	349, 475
BccI	CCATC	3 cut(s)	503, 662, 845
BciT130I	CCWGG	2 cut(s)	138, 503
BciVI	GTATCC	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	269
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	4 cut(s)	6, 116, 414, 546
BfmI	CTRYAG	1 cut(s)	776
BfoI	RGCGCY	1 cut(s)	610
BfuAI	ACCTGC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	438
BisI	GCNGC	3 cut(s)	363, 489, 933
BlnI	CCTAGG	1 cut(s)	545
BlsI	GCNGC	3 cut(s)	364, 490, 934
Bme1390I	CCNGG	3 cut(s)	138, 461, 503
Bme18I	GGWCC	4 cut(s)	79, 512, 791, 821
BmeT110I	CYCGRG	2 cut(s)	38, 246
BmgT120I	GGNCC	4 cut(s)	79, 512, 791, 821
BmiI	GGNNCC	4 cut(s)	252, 543, 564, 608
BmrFI	CCNGG	3 cut(s)	138, 461, 503
BpmI	CTGGAG	3 cut(s)	106, 226, 549
BpuMI	CCSGG	1 cut(s)	461
BsaHI	GRCGYC	2 cut(s)	450, 607
BsaJI	CCNNGG	5 cut(s)	147, 245, 501, 545, 687
BsaXI	ACNNNNNCTCC	4 cut(s)	79, 109, 572, 602
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 459, 551
Bse118I	RCCGGY	2 cut(s)	559, 815
Bse1I	ACTGG	2 cut(s)	209, 847
BseBI	CCWGG	2 cut(s)	138, 503
BseDI	CCNNGG	5 cut(s)	147, 245, 501, 545, 687
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	3 cut(s)	52, 459, 551
BseNI	ACTGG	2 cut(s)	209, 847
BseXI	GCAGC	2 cut(s)	349, 475
BseYI	CCCAGC	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	2 cut(s)	38, 246
BsiSI	CCGG	3 cut(s)	460, 560, 816
BslFI	GGGAC	2 cut(s)	476, 719
BslI	CCNNNNNNNGG	3 cut(s)	52, 459, 551
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	476, 719
BsnI	GGCC	1 cut(s)	244
BsoBI	CYCGRG	2 cut(s)	38, 246
Bsp1286I	GDGCHC	2 cut(s)	45, 544
Bsp143I	GATC	5 cut(s)	263, 334, 497, 692, 709
BspACI	CCGC	3 cut(s)	107, 578, 932
BspANI	GGCC	1 cut(s)	244
BspLI	GGNNCC	4 cut(s)	252, 543, 564, 608
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	5 cut(s)	258, 329, 492, 700, 704
BspT107I	GGYRCC	1 cut(s)	606
BsrFI	RCCGGY	2 cut(s)	559, 815
BsrI	ACTGG	2 cut(s)	209, 847
BssAI	RCCGGY	2 cut(s)	559, 815
BssECI	CCNNGG	5 cut(s)	147, 245, 501, 545, 687
BssMI	GATC	5 cut(s)	263, 334, 497, 692, 709
BssNI	GRCGYC	2 cut(s)	450, 607
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	2 cut(s)	545, 687
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	2 cut(s)	138, 503
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	2 cut(s)	450, 607
BstC8I	GCNNGC	2 cut(s)	561, 621
BstDEI	CTNAG	1 cut(s)	887
BstF5I	GGATG	1 cut(s)	673
BstH2I	RGCGCY	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	5 cut(s)	266, 337, 500, 695, 712
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	5 cut(s)	263, 334, 497, 692, 709
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 241, 250, 362, 569
BstNI	CCWGG	2 cut(s)	138, 503
BstNSI	RCATGY	2 cut(s)	405, 623
BstSCI	CCNGG	3 cut(s)	136, 459, 501
BstSFI	CTRYAG	1 cut(s)	776
BstV1I	GCAGC	2 cut(s)	349, 475
BstX2I	RGATCY	3 cut(s)	263, 497, 692
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	3 cut(s)	263, 497, 692
BsuI	GTATCC	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	673
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	561, 621
CfoI	GCGC	1 cut(s)	609
Cfr10I	RCCGGY	2 cut(s)	559, 815
Cfr13I	GGNCC	4 cut(s)	79, 512, 791, 821
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	144, 744
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	4 cut(s)	133, 402, 620, 899
CviQI	GTAC	2 cut(s)	144, 744
DdeI	CTNAG	1 cut(s)	887
DinI	GGCGCC	1 cut(s)	608
DpnI	GATC	5 cut(s)	265, 336, 499, 694, 711
DpnII	GATC	5 cut(s)	263, 334, 497, 692, 709
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	545, 687
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	2 cut(s)	45, 544
Eco47I	GGWCC	4 cut(s)	79, 512, 791, 821
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	2 cut(s)	177, 569
Eco88I	CYCGRG	2 cut(s)	38, 246
EcoICRI	GAGCTC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	136, 501
EcoT14I	CCWWGG	2 cut(s)	545, 687
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	2 cut(s)	45, 544
EgeI	GGCGCC	1 cut(s)	608
EheI	GGCGCC	1 cut(s)	608
ErhI	CCWWGG	2 cut(s)	545, 687
FaeI	CATG	4 cut(s)	136, 405, 623, 902
FalI	AAGNNNNNCTT	1 cut(s)	919
FaqI	GGGAC	2 cut(s)	476, 719
FatI	CATG	4 cut(s)	132, 401, 619, 898
FblI	GTMKAC	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	363, 489, 933
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	2 cut(s)	45, 544
Fsp4HI	GCNGC	3 cut(s)	363, 489, 933
FspBI	CTAG	4 cut(s)	6, 116, 414, 546
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	3 cut(s)	363, 489, 933
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	3 cut(s)	106, 226, 549
HaeII	RGCGCY	1 cut(s)	610
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	3 cut(s)	460, 560, 816
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	609
Hin1I	GRCGYC	2 cut(s)	450, 607
Hin1II	CATG	4 cut(s)	136, 405, 623, 902
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	1 cut(s)	770
HpaII	CCGG	3 cut(s)	460, 560, 816
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	5 cut(s)	79, 188, 407, 479, 802
Hpy188I	TCNGA	3 cut(s)	196, 351, 391
Hpy188III	TCNNGA	7 cut(s)	38, 85, 248, 421, 566, 665, 728
Hpy8I	GTNNAC	5 cut(s)	79, 188, 407, 479, 802
HpyAV	CCTTC	4 cut(s)	56, 201, 420, 597
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	8 cut(s)	92, 99, 230, 329, 365, 401, 623, 629
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 241, 250, 362, 569
HpyF3I	CTNAG	1 cut(s)	887
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	2 cut(s)	450, 607
Hsp92II	CATG	4 cut(s)	136, 405, 623, 902
HspAI	GCGC	1 cut(s)	607
KasI	GGCGCC	1 cut(s)	606
KroI	GCCGGC	1 cut(s)	559
KroNI	GCCGGC	1 cut(s)	561
Kzo9I	GATC	5 cut(s)	263, 334, 497, 692, 709
LmnI	GCTCC	6 cut(s)	48, 154, 250, 547, 568, 580
Lsp1109I	GCAGC	2 cut(s)	349, 475
MaeI	CTAG	4 cut(s)	6, 116, 414, 546
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	16, 111
MalI	GATC	5 cut(s)	265, 336, 499, 694, 711
MboI	GATC	5 cut(s)	263, 334, 497, 692, 709
MboII	GAAGA	4 cut(s)	273, 314, 687, 844
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	3 cut(s)	263, 497, 692
MhlI	GDGCHC	2 cut(s)	45, 544
MluCI	AATT	3 cut(s)	176, 330, 612
Mly113I	GGCGCC	1 cut(s)	607
MmeI	TCCRAC	1 cut(s)	458
Mph1103I	ATGCAT	1 cut(s)	403
MroNI	GCCGGC	1 cut(s)	559
MroXI	GAANNNNTTC	2 cut(s)	321, 648
MseI	TTAA	1 cut(s)	915
MslI	CAYNNNNRTG	3 cut(s)	624, 666, 903
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	3 cut(s)	460, 560, 816
MspR9I	CCNGG	3 cut(s)	138, 461, 503
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	2 cut(s)	138, 503
MwoI	GCNNNNNNNGC	5 cut(s)	133, 241, 250, 362, 569
NaeI	GCCGGC	1 cut(s)	561
NarI	GGCGCC	1 cut(s)	607
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	5 cut(s)	263, 334, 497, 692, 709
NgoMIV	GCCGGC	1 cut(s)	559
NlaIII	CATG	4 cut(s)	136, 405, 623, 902
NlaIV	GGNNCC	4 cut(s)	252, 543, 564, 608
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	2 cut(s)	405, 623
PaeI	GCATGC	1 cut(s)	623
PceI	AGGCCT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PdiI	GCCGGC	1 cut(s)	561
PdmI	GAANNNNTTC	2 cut(s)	321, 648
PfeI	GAWTC	1 cut(s)	770
PkrI	GCNGC	3 cut(s)	364, 490, 934
PluTI	GGCGCC	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	136, 501
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	136, 501
PspN4I	GGNNCC	4 cut(s)	252, 543, 564, 608
PspPI	GGNCC	4 cut(s)	79, 512, 791, 821
PsuI	RGATCY	3 cut(s)	263, 497, 692
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	145, 745
RsaNI	GTAC	2 cut(s)	144, 744
RseI	CAYNNNNRTG	3 cut(s)	624, 666, 903
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	915
SatI	GCNGC	3 cut(s)	363, 489, 933
Sau3AI	GATC	5 cut(s)	263, 334, 497, 692, 709
Sau96I	GGNCC	4 cut(s)	79, 512, 791, 821
ScrFI	CCNGG	3 cut(s)	138, 461, 503
SduI	GDGCHC	2 cut(s)	45, 544
SfcI	CTRYAG	1 cut(s)	776
SfoI	GGCGCC	1 cut(s)	608
SinI	GGWCC	4 cut(s)	79, 512, 791, 821
SmiMI	CAYNNNNRTG	3 cut(s)	624, 666, 903
SpeI	ACTAGT	1 cut(s)	5
SphI	GCATGC	1 cut(s)	623
Sse9I	AATT	3 cut(s)	176, 330, 612
SseBI	AGGCCT	1 cut(s)	244
SsiI	CCGC	3 cut(s)	107, 578, 932
SspDI	GGCGCC	1 cut(s)	606
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	4 cut(s)	6, 116, 414, 546
SstI	GAGCTC	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	3 cut(s)	136, 459, 501
StyI	CCWWGG	2 cut(s)	545, 687
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	31, 315
TasI	AATT	3 cut(s)	176, 330, 612
TatI	WGTACW	1 cut(s)	743
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	1 cut(s)	915
Tru9I	TTAA	1 cut(s)	915
TseI	GCWGC	2 cut(s)	362, 488
TspDTI	ATGAA	3 cut(s)	213, 291, 483
TspGWI	ACGGA	2 cut(s)	783, 844
VpaK11BI	GGWCC	4 cut(s)	79, 512, 791, 821
XceI	RCATGY	2 cut(s)	405, 623
XmaJI	CCTAGG	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	478
XmnI	GAANNNNTTC	2 cut(s)	321, 648
XspI	CTAG	4 cut(s)	6, 116, 414, 546
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.