Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001548

Physical Location & Seq

Genomic Coordinates Forward (+)

75416089 .. 75416730

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0642200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCTGTGGAGCTAACAAGCCTTATAAGGTTGGGAACCTTGAATTTGTCCAAGAATCATTTGACAGGAATTATTCCAGCAAAGATTGGGAAATTGGAGTGGATAGAGACTCTTGATCTATCAATGAATCAACTTTCAGGATCAATTCCACCGAGCATGGTGTCTTTAACATTTTTGAACTATCTCAACCTGTCATACAATCACTTGTCTGGAAAAGTCCCAACAGGTAACCAATTTAGCACTCTACTTGATCCATCAATTTATAAAGGCAATGCTGCTCTTTGTGGGTATCCTTTGCCAAATGGTTGCCGAGACAATGAAGAAACACCTCAGGTTCCAGGTGAAGAAGGACAACAAGGTGATGATAGTGGACTCGAAAAGCTATGGTTGATCGTCAGCATTGTGATAGGTTTCATTGTGGGGTTCTGGGGAGTTTGTGGGAGTTTGGTGATTAACAAGTCCTGGAGACATGCCTATTTCAACTTCCTTGACAAAGTGAAGTATGCTCTGATTGATTTTGTATCAGCCATTGGCAGGCATCTGCAGAAAAGATCGAGGGGCACAGAAGACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

191

Amino Acids

21.1

Weight (kDa)

6.41

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	5 - 67	3.1e-06	Leucine-rich repeat region
LRR_8	PF13855	10 - 69	2.7e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54610 AT1G54610 AT1G54610 AT3G05050 AT3G05050 AT3G05050
fragaria_vesca	FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100
malus_domestica	MD02G1048200.v1.1 MD04G1216500.v1.1 MD12G1233100.v1.1 MD13G1173900.v1.1 MD16G1175000.v1.1
prunus_persica	Prupe.1G142100_v2.0.a1 Prupe.1G142100_v2.0.a1 Prupe.6G336200_v2.0.a1 Prupe.6G336200_v2.0.a1
pyrus_communis	pycom04g19240 pycom12g21560
rosa_chinensis	RchiOBHm_Chr3g0452651 RchiOBHm_Chr4g0420991
rosa_laevigata	RLG00000007715 RLG00000025575
rosa_multiflora	Rmu_sc0006508.1_g000002 Rmu_ssc0000156.1_g000011
rosa_roxburghii	Rroxscaffold_5G00363340 Rroxscaffold_6G00429690
rosa_rugosa	Rorug02G0642200 Rorug02G0642300 Rorug02G0642300 Rorug02G0642400 Rorug04G0167500 Rorug04G0167500
rosa_samantha	Rh3AG044600 Rh3BG046900 Rh3CG045400 Rh3DG045800 Rh4AG229000 Rh4BG232000 Rh4CG243600 Rh4DG227400
rosa_wichuraiana	Rw3G003480 Rw4G019800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	26, 264
AclWI	GGATC	2 cut(s)	148, 245
AcsI	RAATTY	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	534
AgsI	TTSAA	3 cut(s)	43, 178, 481
AjnI	CCWGG	2 cut(s)	337, 461
AluBI	AGCT	2 cut(s)	13, 382
AluI	AGCT	2 cut(s)	13, 382
Alw26I	GTCTC	3 cut(s)	101, 306, 460
AlwI	GGATC	2 cut(s)	148, 245
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	353, 371, 460
AxyI	CCTNAGG	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	2 cut(s)	339, 463
BciVI	GTATCC	1 cut(s)	300
BcoDI	GTCTC	3 cut(s)	101, 306, 460
BfmI	CTRYAG	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	300
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	339, 463
BmiI	GGNNCC	2 cut(s)	37, 336
BmrFI	CCNGG	2 cut(s)	339, 463
BmsI	GCATC	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	2 cut(s)	339, 463
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	563
BseXI	GCAGC	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	534
BsmAI	GTCTC	3 cut(s)	101, 306, 460
BsmFI	GGGAC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	563
Bsp143I	GATC	5 cut(s)	115, 140, 250, 390, 551
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	37, 336
BspMAI	CTGCAG	1 cut(s)	546
BspPI	GGATC	2 cut(s)	148, 245
BsrDI	GCAATG	1 cut(s)	277
BssMI	GATC	5 cut(s)	115, 140, 250, 390, 551
Bst2UI	CCWGG	2 cut(s)	339, 463
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	1 cut(s)	330
BstEII	GGTNACC	1 cut(s)	227
BstKTI	GATC	5 cut(s)	118, 143, 253, 393, 554
BstMAI	GTCTC	3 cut(s)	101, 306, 460
BstMBI	GATC	5 cut(s)	115, 140, 250, 390, 551
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	339, 463
BstNSI	RCATGY	1 cut(s)	473
BstPI	GGTNACC	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	337, 461
BstSFI	CTRYAG	1 cut(s)	542
BstSLI	GKGCMC	1 cut(s)	563
BstV1I	GCAGC	1 cut(s)	262
Bsu36I	CCTNAGG	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	536
CviAII	CATG	2 cut(s)	157, 470
CviJI	RGCY	4 cut(s)	13, 21, 382, 527
CviKI_1	RGCY	4 cut(s)	13, 21, 382, 527
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	5 cut(s)	117, 142, 252, 392, 553
DpnII	GATC	5 cut(s)	115, 140, 250, 390, 551
Eco81I	CCTNAGG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	227
EcoO65I	GGTNACC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	337, 461
FaeI	CATG	2 cut(s)	160, 473
FaiI	YATR	7 cut(s)	26, 158, 196, 264, 385, 471, 504
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	2 cut(s)	156, 469
Fnu4HI	GCNGC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	484
Hin1II	CATG	2 cut(s)	160, 473
HinfI	GANTC	4 cut(s)	55, 109, 127, 372
HphI	GGTGA	3 cut(s)	353, 371, 460
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	1 cut(s)	510
Hpy188III	TCNNGA	3 cut(s)	113, 138, 210
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	341
HpyCH4V	TGCA	1 cut(s)	544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	160, 473
Kzo9I	GATC	5 cut(s)	115, 140, 250, 390, 551
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	547
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	5 cut(s)	117, 142, 252, 392, 553
MboI	GATC	5 cut(s)	115, 140, 250, 390, 551
MboII	GAAGA	2 cut(s)	332, 356
MhlI	GDGCHC	1 cut(s)	563
MluCI	AATT	6 cut(s)	43, 69, 92, 144, 233, 258
MlyI	GAGTC	2 cut(s)	103, 366
MnlI	CCTC	2 cut(s)	339, 549
MseI	TTAA	3 cut(s)	167, 453, 574
MspR9I	CCNGG	2 cut(s)	339, 463
MvaI	CCWGG	2 cut(s)	339, 463
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	5 cut(s)	115, 140, 250, 390, 551
NlaIII	CATG	2 cut(s)	160, 473
NlaIV	GGNNCC	2 cut(s)	37, 336
NmeAIII	GCCGAG	1 cut(s)	335
NspI	RCATGY	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	55, 127
PfoI	TCCNGGA	1 cut(s)	461
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	2 cut(s)	103, 366
PpsI	GAGTC	2 cut(s)	103, 366
PsiI	TTATAA	2 cut(s)	26, 264
Psp6I	CCWGG	2 cut(s)	337, 461
PspEI	GGTNACC	1 cut(s)	227
PspGI	CCWGG	2 cut(s)	337, 461
PspN4I	GGNNCC	2 cut(s)	37, 336
PstI	CTGCAG	1 cut(s)	546
SaqAI	TTAA	3 cut(s)	167, 453, 574
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	5 cut(s)	115, 140, 250, 390, 551
SchI	GAGTC	2 cut(s)	103, 366
ScrFI	CCNGG	2 cut(s)	339, 463
SduI	GDGCHC	1 cut(s)	563
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	1 cut(s)	542
Sse9I	AATT	6 cut(s)	43, 69, 92, 144, 233, 258
StyD4I	CCNGG	2 cut(s)	337, 461
TaqI	TCGA	2 cut(s)	375, 554
TasI	AATT	6 cut(s)	43, 69, 92, 144, 233, 258
TfiI	GAWTC	2 cut(s)	55, 127
Tru1I	TTAA	3 cut(s)	167, 453, 574
Tru9I	TTAA	3 cut(s)	167, 453, 574
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	3 cut(s)	140, 333, 403
XapI	RAATTY	1 cut(s)	43
XceI	RCATGY	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.