Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001548

Physical Location & Seq

Genomic Coordinates Forward (+)

14871955 .. 14872403

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1175000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTATTATCTTGATCAGATTGGGCAAGGGATGTATAGTAATGTGTACAAAGCTAGGGATCTTTTGACAGGGAAAATTGTTGCTCCGAAGAAAGTTCGGTTTGACAATTTGGAGCCCGAGAGTGTAAGGTTTATGGCCAGAGAGATTCTCATTCTGCATCGTCTGGATCATCCTAATGTTGTAAAATTGGAAGGTCTAGTGACCTCGAGGATGTCGTGTACTGTGTACCTTGTATTTGAATATATGGAGCATGATTTGGCAGGACTTGCTGCAAGCCCTGCAATCAAGTTCACAGAGCCTCAGGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

104

Amino Acids

11.78

Weight (kDa)

7.86

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 89	5.2e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 84	3.5e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54610 AT1G54610 AT1G54610 AT3G05050 AT3G05050 AT3G05050
fragaria_vesca	FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100
malus_domestica	MD02G1048200.v1.1 MD04G1216500.v1.1 MD12G1233100.v1.1 MD13G1173900.v1.1 MD16G1175000.v1.1
prunus_persica	Prupe.1G142100_v2.0.a1 Prupe.1G142100_v2.0.a1 Prupe.6G336200_v2.0.a1 Prupe.6G336200_v2.0.a1
pyrus_communis	pycom04g19240 pycom12g21560
rosa_chinensis	RchiOBHm_Chr3g0452651 RchiOBHm_Chr4g0420991
rosa_laevigata	RLG00000007715 RLG00000025575
rosa_multiflora	Rmu_sc0006508.1_g000002 Rmu_ssc0000156.1_g000011
rosa_roxburghii	Rroxscaffold_5G00363340 Rroxscaffold_6G00429690
rosa_rugosa	Rorug02G0642200 Rorug02G0642300 Rorug02G0642300 Rorug02G0642400 Rorug04G0167500 Rorug04G0167500
rosa_samantha	Rh3AG044600 Rh3BG046900 Rh3CG045400 Rh3DG045800 Rh4AG229000 Rh4BG232000 Rh4CG243600 Rh4DG227400
rosa_wichuraiana	Rw3G003480 Rw4G019800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	205
AclWI	GGATC	2 cut(s)	66, 174
AcoI	YGGCCR	1 cut(s)	135
AfaI	GTAC	3 cut(s)	47, 220, 227
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	2 cut(s)	66, 174
Ama87I	CYCGRG	2 cut(s)	116, 205
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	269
AvaI	CYCGRG	2 cut(s)	116, 205
AxyI	CCTNAGG	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	256
BclI	TGATCA	1 cut(s)	13
BfaI	CTAG	2 cut(s)	54, 197
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BmeT110I	CYCGRG	2 cut(s)	116, 205
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
Bse21I	CCTNAGG	1 cut(s)	300
BseGI	GGATG	3 cut(s)	36, 169, 216
BseXI	GCAGC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	137
BsiHKCI	CYCGRG	2 cut(s)	116, 205
BsnI	GGCC	1 cut(s)	137
BsoBI	CYCGRG	2 cut(s)	116, 205
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	13, 58, 166
BspANI	GGCC	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	66, 174
BsrGI	TGTACA	1 cut(s)	45
BssMI	GATC	3 cut(s)	13, 58, 166
Bst4CI	ACNGT	1 cut(s)	223
BstAPI	GCANNNNNTGC	2 cut(s)	266, 278
BstAUI	TGTACA	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	36, 169, 216
BstKTI	GATC	3 cut(s)	16, 61, 169
BstMBI	GATC	3 cut(s)	13, 58, 166
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 278
BstV1I	GCAGC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	3 cut(s)	36, 169, 216
Cac8I	GCNNGC	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	46, 219, 226
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	5 cut(s)	53, 115, 137, 276, 298
CviKI_1	RGCY	5 cut(s)	53, 115, 137, 276, 298
CviQI	GTAC	3 cut(s)	46, 219, 226
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	3 cut(s)	15, 60, 168
DpnII	GATC	3 cut(s)	13, 58, 166
EaeI	YGGCCR	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	117
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	2 cut(s)	116, 205
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	1 cut(s)	254
FaiI	YATR	5 cut(s)	36, 134, 243, 245, 252
FatI	CATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	3 cut(s)	43, 156, 223
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	54, 197
GluI	GCNGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	254
HinfI	GANTC	1 cut(s)	145
Hpy166II	GTNNAC	4 cut(s)	46, 219, 226, 291
Hpy188I	TCNGA	2 cut(s)	18, 87
Hpy188III	TCNNGA	2 cut(s)	11, 164
Hpy8I	GTNNAC	4 cut(s)	46, 219, 226, 291
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	157, 272, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 278
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	13, 58, 166
LmnI	GCTCC	3 cut(s)	88, 112, 247
LpnPI	CCDG	6 cut(s)	54, 149, 151, 246, 287, 291
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	2 cut(s)	54, 197
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	3 cut(s)	15, 60, 168
MboI	GATC	3 cut(s)	13, 58, 166
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	3 cut(s)	75, 106, 185
MluNI	TGGCCA	1 cut(s)	137
MnlI	CCTC	3 cut(s)	201, 214, 309
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	266, 278
NdeII	GATC	3 cut(s)	13, 58, 166
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	114
PspXI	VCTCGAGB	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	3 cut(s)	47, 220, 227
RsaNI	GTAC	3 cut(s)	46, 219, 226
RseI	CAYNNNNRTG	1 cut(s)	174
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	3 cut(s)	13, 58, 166
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	5 cut(s)	55, 131, 196, 206, 231
SfaNI	GCATC	1 cut(s)	166
Sfr274I	CTCGAG	1 cut(s)	205
SlaI	CTCGAG	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	3 cut(s)	75, 106, 185
SspMI	CTAG	2 cut(s)	54, 197
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	206
TasI	AATT	3 cut(s)	75, 106, 185
TatI	WGTACW	2 cut(s)	45, 218
TfiI	GAWTC	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	199
XhoI	CTCGAG	1 cut(s)	205
XspI	CTAG	2 cut(s)	54, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.