Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001548

Physical Location & Seq

Genomic Coordinates Reverse (-)

22710520 .. 22713175

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21560.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACTAGTCGGGTGGTTACTCTATGGTATCGACCTCCTGAGCTTCTTCTTGGGGCTACTGATTATGGTGTGGGTGTGGACCTCTGGAGTGCAGGTTGCATTTTAGCAGAGTTACTAGCTGGGAAGCCTATCATGCCTGGTCGTACTGAGGTGGAGCAACTACATAAGATATACAAACTATGTGGTTCACCTTCGGATGAATACTGGAGGAAAGCAAAGTTGCCTAATGCAACTCTATTTAGGCCTCGGGAGCCTTACAGAAGATGCATAAGAGAGACATTCAAAGATTTTCCCCCATCATCATTGCCCCTTATTGAAACTCTTCTTGCAATCGATCCAGCAGAACGTCAGACAGCCACAGCTGCATTGTGCAGTGGGTTTTTTCTATCAGAGCCTTATGCTTGTGAACCTTCTAGTCTCCCAAAGTATCCCCCAACCAAAGAAATTGACGCCAAACGCCGGGACGACGAAGCTCGTAGACTACGAGCTGCTGGGAGAGCCCAGGCTGATGGTCCAAAGAAAACACGCACACGGGAACGGGGTCCTAGGGGTATGCCAGCTCCAGAAGCCAATGCCGAGCTTCAGTCCAATATTGATAGAAGGCGCTTAATTACGCATGCAAATGCAAAGAGCAAAAGCGAAAAGTTTCCTCCACCGCACCAGGATGGGGCAGTTGGCTACCCTTTGGGATCTTCAAATCATTTTGATCCCTCCCTTGTTCCTCCTGACGTTCCTTTCAGCACAACCTCATTCAGTTACCCTAAAGAGTCACTGCAAGCTTGGTCAGGTCCGTTGGTCGACCCTGCTTCTGCCGGTGGTCCAAGACGGAAGAAACATACTGGACACGATGGGCGAGAAACTTCAAAATCCTTTACAGGAAACCATAGGGAGAAACATCACGATGCTCGTGTTAGAGGAAAGAGAAGTGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

312

Amino Acids

34.54

Weight (kDa)

9.64

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54610 AT1G54610 AT1G54610 AT3G05050 AT3G05050 AT3G05050
fragaria_vesca	FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100
malus_domestica	MD02G1048200.v1.1 MD04G1216500.v1.1 MD12G1233100.v1.1 MD13G1173900.v1.1 MD16G1175000.v1.1
prunus_persica	Prupe.1G142100_v2.0.a1 Prupe.1G142100_v2.0.a1 Prupe.6G336200_v2.0.a1 Prupe.6G336200_v2.0.a1
pyrus_communis	pycom04g19240 pycom12g21560
rosa_chinensis	RchiOBHm_Chr3g0452651 RchiOBHm_Chr4g0420991
rosa_laevigata	RLG00000007715 RLG00000025575
rosa_multiflora	Rmu_sc0006508.1_g000002 Rmu_ssc0000156.1_g000011
rosa_roxburghii	Rroxscaffold_5G00363340 Rroxscaffold_6G00429690
rosa_rugosa	Rorug02G0642200 Rorug02G0642300 Rorug02G0642300 Rorug02G0642400 Rorug04G0167500 Rorug04G0167500
rosa_samantha	Rh3AG044600 Rh3BG046900 Rh3CG045400 Rh3DG045800 Rh4AG229000 Rh4BG232000 Rh4CG243600 Rh4DG227400
rosa_wichuraiana	Rw3G003480 Rw4G019800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AccI	GTMKAC	2 cut(s)	478, 798
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	3 cut(s)	329, 697, 701
AcuI	CTGAAG	1 cut(s)	566
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	459, 667
AgsI	TTSAA	4 cut(s)	283, 317, 696, 864
AhlI	ACTAGT	1 cut(s)	5
AjnI	CCWGG	3 cut(s)	136, 501, 660
AluBI	AGCT	8 cut(s)	43, 119, 362, 473, 488, 560, 580, 779
AluI	AGCT	8 cut(s)	43, 119, 362, 473, 488, 560, 580, 779
Alw26I	GTCTC	2 cut(s)	269, 422
AlwI	GGATC	3 cut(s)	329, 697, 701
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	362, 488
Asp700I	GAANNNNTTC	2 cut(s)	321, 645
AspA2I	CCTAGG	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	5 cut(s)	79, 512, 542, 788, 818
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	180
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	5 cut(s)	79, 512, 542, 788, 818
AvrII	CCTAGG	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	502
BauI	CACGAG	1 cut(s)	906
BbvI	GCAGC	2 cut(s)	349, 475
BccI	CCATC	4 cut(s)	304, 503, 659, 842
BciT130I	CCWGG	3 cut(s)	138, 503, 662
BciVI	GTATCC	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	2 cut(s)	269, 422
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	4 cut(s)	6, 116, 414, 546
BfoI	RGCGCY	1 cut(s)	607
BfuAI	ACCTGC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	438
BisI	GCNGC	2 cut(s)	363, 489
BlnI	CCTAGG	1 cut(s)	545
BlsI	GCNGC	2 cut(s)	364, 490
Bme1390I	CCNGG	4 cut(s)	138, 461, 503, 662
Bme18I	GGWCC	5 cut(s)	79, 512, 542, 788, 818
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	5 cut(s)	79, 512, 542, 788, 818
BmiI	GGNNCC	2 cut(s)	252, 543
BmrFI	CCNGG	4 cut(s)	138, 461, 503, 662
BmsI	GCATC	2 cut(s)	254, 892
BpmI	CTGGAG	3 cut(s)	106, 226, 546
Bpu10I	CCTNAGC	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	461
Bsa29I	ATCGAT	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	450
BsaJI	CCNNGG	3 cut(s)	245, 501, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	459, 667
Bse118I	RCCGGY	1 cut(s)	812
Bse1I	ACTGG	2 cut(s)	209, 844
Bse3DI	GCAATG	1 cut(s)	302
BseBI	CCWGG	3 cut(s)	138, 503, 662
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	245, 501, 545
BseGI	GGATG	2 cut(s)	202, 670
BseLI	CCNNNNNNNGG	2 cut(s)	459, 667
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	30, 138
BseNI	ACTGG	2 cut(s)	209, 844
BseXI	GCAGC	2 cut(s)	349, 475
BseYI	CCCAGC	2 cut(s)	119, 491
BsgI	GTGCAG	2 cut(s)	111, 391
BshFI	GGCC	1 cut(s)	244
BshVI	ATCGAT	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	460, 813
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	459, 667
BsmAI	GTCTC	2 cut(s)	269, 422
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	3 cut(s)	334, 689, 706
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	2 cut(s)	31, 139
BspDI	ATCGAT	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	252, 543
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	3 cut(s)	329, 697, 701
BsrDI	GCAATG	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	812
BsrI	ACTGG	2 cut(s)	209, 844
BssAI	RCCGGY	1 cut(s)	812
BssECI	CCNNGG	3 cut(s)	245, 501, 545
BssMI	GATC	3 cut(s)	334, 689, 706
BssNI	GRCGYC	1 cut(s)	450
BssSI	CACGAG	1 cut(s)	906
BssT1I	CCWWGG	1 cut(s)	545
Bst2BI	CACGAG	1 cut(s)	906
Bst2UI	CCWGG	3 cut(s)	138, 503, 662
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	450
BstC8I	GCNNGC	3 cut(s)	558, 618, 777
BstDEI	CTNAG	2 cut(s)	39, 147
BstF5I	GGATG	2 cut(s)	202, 670
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	3 cut(s)	337, 692, 709
BstMAI	GTCTC	2 cut(s)	269, 422
BstMBI	GATC	3 cut(s)	334, 689, 706
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 250, 362, 497, 566
BstNI	CCWGG	3 cut(s)	138, 503, 662
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	4 cut(s)	136, 459, 501, 660
BstV1I	GCAGC	2 cut(s)	349, 475
BstX2I	RGATCY	1 cut(s)	689
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	689
Bsu15I	ATCGAT	1 cut(s)	333
BsuI	GTATCC	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	244
BsuTUI	ATCGAT	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	202, 670
BtsI	GCAGTG	2 cut(s)	379, 770
BtsIMutI	CAGTG	2 cut(s)	379, 770
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	3 cut(s)	558, 618, 777
CfoI	GCGC	1 cut(s)	606
Cfr10I	RCCGGY	1 cut(s)	812
Cfr13I	GGNCC	5 cut(s)	79, 512, 542, 788, 818
ClaI	ATCGAT	1 cut(s)	333
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	144
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	2 cut(s)	133, 617
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	39, 147
DpnI	GATC	3 cut(s)	336, 691, 708
DpnII	GATC	3 cut(s)	334, 689, 706
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	545
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	502
Eco47I	GGWCC	5 cut(s)	79, 512, 542, 788, 818
Eco57I	CTGAAG	1 cut(s)	566
Eco88I	CYCGRG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	3 cut(s)	136, 501, 660
EcoT14I	CCWWGG	1 cut(s)	545
EcoT22I	ATGCAT	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	545
FaeI	CATG	2 cut(s)	136, 620
FalI	AAGNNNNNCTT	1 cut(s)	916
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	2 cut(s)	132, 616
FblI	GTMKAC	2 cut(s)	478, 798
Fnu4HI	GCNGC	2 cut(s)	363, 489
FokI	GGATG	2 cut(s)	209, 677
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	2 cut(s)	363, 489
FspBI	CTAG	4 cut(s)	6, 116, 414, 546
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	2 cut(s)	363, 489
GsaI	CCCAGC	2 cut(s)	123, 495
GsuI	CTGGAG	3 cut(s)	106, 226, 546
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	2 cut(s)	460, 813
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	606
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	2 cut(s)	136, 620
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HindIII	AAGCTT	1 cut(s)	777
HinfI	GANTC	1 cut(s)	767
HpaII	CCGG	2 cut(s)	460, 813
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	5 cut(s)	79, 188, 407, 479, 799
Hpy188I	TCNGA	3 cut(s)	196, 351, 391
Hpy188III	TCNNGA	6 cut(s)	38, 85, 248, 563, 725, 899
Hpy8I	GTNNAC	5 cut(s)	79, 188, 407, 479, 799
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	3 cut(s)	201, 420, 594
HpyCH4IV	ACGT	2 cut(s)	346, 729
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 250, 362, 497, 566
HpyF3I	CTNAG	2 cut(s)	39, 147
HpySE526I	ACGT	2 cut(s)	346, 729
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	136, 620
HspAI	GCGC	1 cut(s)	604
Kzo9I	GATC	3 cut(s)	334, 689, 706
LmnI	GCTCC	3 cut(s)	154, 250, 565
Lsp1109I	GCAGC	2 cut(s)	349, 475
LweI	GCATC	2 cut(s)	254, 892
MaeI	CTAG	4 cut(s)	6, 116, 414, 546
MaeII	ACGT	2 cut(s)	346, 729
MaeIII	GTNAC	4 cut(s)	16, 111, 755, 768
MalI	GATC	3 cut(s)	336, 691, 708
MboI	GATC	3 cut(s)	334, 689, 706
MboII	GAAGA	5 cut(s)	38, 273, 314, 684, 841
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	2 cut(s)	444, 609
MlyI	GAGTC	1 cut(s)	776
Mph1103I	ATGCAT	1 cut(s)	269
MroXI	GAANNNNTTC	2 cut(s)	321, 645
MseI	TTAA	1 cut(s)	608
MslI	CAYNNNNRTG	3 cut(s)	621, 663, 900
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	460, 813
MspR9I	CCNGG	4 cut(s)	138, 461, 503, 662
MvaI	CCWGG	3 cut(s)	138, 503, 662
MwoI	GCNNNNNNNGC	5 cut(s)	133, 250, 362, 497, 566
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	3 cut(s)	334, 689, 706
NlaIII	CATG	2 cut(s)	136, 620
NlaIV	GGNNCC	2 cut(s)	252, 543
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	768
NsiI	ATGCAT	1 cut(s)	269
NspI	RCATGY	1 cut(s)	620
PaeI	GCATGC	1 cut(s)	620
PceI	AGGCCT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PdmI	GAANNNNTTC	2 cut(s)	321, 645
PkrI	GCNGC	2 cut(s)	364, 490
PleI	GAGTC	1 cut(s)	775
PpsI	GAGTC	1 cut(s)	775
PpuMI	RGGWCCY	1 cut(s)	542
Psp5II	RGGWCCY	1 cut(s)	542
Psp6I	CCWGG	3 cut(s)	136, 501, 660
PspFI	CCCAGC	2 cut(s)	119, 491
PspGI	CCWGG	3 cut(s)	136, 501, 660
PspN4I	GGNNCC	2 cut(s)	252, 543
PspPI	GGNCC	5 cut(s)	79, 512, 542, 788, 818
PspPPI	RGGWCCY	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	3 cut(s)	621, 663, 900
SalI	GTCGAC	1 cut(s)	797
SaqAI	TTAA	1 cut(s)	608
SatI	GCNGC	2 cut(s)	363, 489
Sau3AI	GATC	3 cut(s)	334, 689, 706
Sau96I	GGNCC	5 cut(s)	79, 512, 542, 788, 818
SchI	GAGTC	1 cut(s)	776
ScrFI	CCNGG	4 cut(s)	138, 461, 503, 662
SduI	GDGCHC	1 cut(s)	502
SfaNI	GCATC	2 cut(s)	254, 892
SinI	GGWCC	5 cut(s)	79, 512, 542, 788, 818
SmiMI	CAYNNNNRTG	3 cut(s)	621, 663, 900
SpeI	ACTAGT	1 cut(s)	5
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	2 cut(s)	444, 609
SseBI	AGGCCT	1 cut(s)	244
SsiI	CCGC	1 cut(s)	656
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	4 cut(s)	6, 116, 414, 546
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	4 cut(s)	136, 459, 501, 660
StyI	CCWWGG	1 cut(s)	545
TaiI	ACGT	2 cut(s)	349, 732
TaqI	TCGA	3 cut(s)	31, 333, 798
TasI	AATT	2 cut(s)	444, 609
Tru1I	TTAA	1 cut(s)	608
Tru9I	TTAA	1 cut(s)	608
TscAI	CASTG	2 cut(s)	379, 777
TseFI	GTSAC	1 cut(s)	768
TseI	GCWGC	2 cut(s)	362, 488
Tsp45I	GTSAC	1 cut(s)	768
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	2 cut(s)	780, 841
TspRI	CASTG	2 cut(s)	379, 777
VpaK11BI	GGWCC	5 cut(s)	79, 512, 542, 788, 818
XceI	RCATGY	1 cut(s)	620
XmaJI	CCTAGG	1 cut(s)	545
XmiI	GTMKAC	2 cut(s)	478, 798
XmnI	GAANNNNTTC	2 cut(s)	321, 645
XspI	CTAG	4 cut(s)	6, 116, 414, 546
Zsp2I	ATGCAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.