FvH4_4g17190

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
21089497 .. 21093901
4405 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17190.t1

Sequence Viewer

Length: 1302 bp
ATGACGGGGAAGATTGTTGCGCTAAAGAAGGTTCGGTTTGATAATTTGGAGCCCGAGAGTGTGAAGTTCATGGCCAGAGAGATTCTTATTCTGCGTCGTTTGGATCATCCGAATGTGATAAAGCTGGAAGGTTTAGTGACTTCGAGGATGTCGTGTAGTTTGTACCTTGTGTTTGAATATATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCTGCAATCAAATTTACAGAGCCTCAGGTCAAGTGCTATATGCACCAGTTGTTATCTGGACTTGAACACTGTCATAATCGCAATGTGCTTCATCGTGATATTAAAGGGTCCAATCTTCTTATTGACAATGGTGGGACCTTAAAGATTGCTGATTTTGGATTGGCTTCATTCTTTGATCCTAATCACAAGCAACCAATGACTAGTAGAGTAGTTACTCTATGGTATCGACCCCCAGAGCTTCTTCTTGGTGCCACTGATTATGGTGTGGGTGTGGACCTCTGGAGTGCTGGCTGCATTTTAGCTGAGTTGTTGGCCGGGAAGCCAATCATGCCTGGTCGCACAGAAGTGGAGCAGTTACACAAGATATTCAAGTTATGTGGCTCCCCTTCGGAAGAATATTGGAAAAAGTCAAAGTTGCCACATGCTACCATTTTTAAACCTCAGCAATCATACAAAAGATGCATTGCAGAAACCTTTAAGGACTTTCCACAGTCATCATTGCCACTGATTGACACCCTGCTTGCAATTGACTCAGCTCAACGTCAGACTGCCACTGCTGCATTGAGGAATGAATACTTCACAACCAAGCCTTATGCTTGTGATCCTTCTAGCCTGCCAAAATATCCACCCAGCAAAGAAATGGATGCTAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCTGCTGGCAAATCTAATGCAGACGGTGTAAGGAGATCTCGGCCACGTGATCGAGCTGTTAGGGGAATTCCTGTTCCGGAAGCCAATGCTGAGCTTCAAGCCAATCTTGATAGGCGGCGTCTGATAACACATGCAAATGCTAAGAGCAAGAGCGAGAAGTTTCCTCCTCCACACCAAGATGGAACACTTGGCTATACTTTAGGTTCTTCAAATCACATTGATCCTATCTTCGACCCCCCTGATGTTCCATTCAGTTCCACAAACTTCTCATATTCAAAAGAATCCATTCAAACTTGGTCCGGCCCCTTAATGGATCCTGCCGGAGTAGGGGCTCCAAGGAGAAAGAAACACTCATCAGGACAAATTCATTCACAGTCAAAGACCTCAAAAAGAGACTCAAAGAGATAA

Protein Analysis

434

Amino Acids

48.49

Weight (kDa)

9.44

Isoelectric Point (pI)

57.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 264 1.5e-58 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 193 1.7e-26 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 461
AccIII TCCGGA 1 cut(s) 970
AciI CCGC 1 cut(s) 1009
AclWI GGATC 6 cut(s) 111, 383, 809, 1109, 1202, 1215
AcoI YGGCCR 3 cut(s) 72, 525, 935
AcsI RAATTY 3 cut(s) 224, 960, 1257
AcvI CACGTG 1 cut(s) 941
AcyI GRCGYC 1 cut(s) 1012
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 2 cut(s) 1204, 1221
AgsI TTSAA 7 cut(s) 176, 278, 583, 992, 1104, 1170, 1184
AhlI ACTAGT 1 cut(s) 413
AjnI CCWGG 1 cut(s) 544
AleI CACNNNNGTG 1 cut(s) 557
AloI GAACNNNNNNTCC 2 cut(s) 951, 983
AluBI AGCT 9 cut(s) 124, 451, 515, 749, 865, 881, 896, 950, 988
AluI AGCT 9 cut(s) 124, 451, 515, 749, 865, 881, 896, 950, 988
Alw26I GTCTC 1 cut(s) 1281
AlwI GGATC 6 cut(s) 111, 383, 809, 1109, 1202, 1215
Ama87I CYCGRG 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 970
AoxI GGCC 4 cut(s) 72, 525, 935, 1195
ApeKI GCWGC 4 cut(s) 206, 504, 770, 896
ApoI RAATTY 3 cut(s) 224, 960, 1257
Asp700I GAANNNNTTC 1 cut(s) 1179
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 5 cut(s) 321, 348, 487, 1191, 1196
AsuC2I CCSGG 1 cut(s) 529
AvaI CYCGRG 1 cut(s) 53
AvaII GGWCC 4 cut(s) 321, 348, 487, 1191
AxyI CCTNAGG 1 cut(s) 237
BalI TGGCCA 1 cut(s) 74
BamHI GGATCC 1 cut(s) 1207
BanI GGYRCC 1 cut(s) 461
BanII GRGCYC 2 cut(s) 54, 1228
BbrPI CACGTG 1 cut(s) 941
BbvCI CCTCAGC 1 cut(s) 654
BbvI GCAGC 4 cut(s) 193, 491, 757, 883
BccI CCATC 1 cut(s) 1067
BciT130I CCWGG 1 cut(s) 546
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 1281
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 3 cut(s) 414, 822, 882
BglII AGATCT 1 cut(s) 929
BisI GCNGC 5 cut(s) 207, 505, 771, 897, 1010
BlpI GCTNAGC 2 cut(s) 861, 984
BlsI GCNGC 5 cut(s) 208, 506, 772, 898, 1011
Bme1390I CCNGG 2 cut(s) 529, 546
Bme18I GGWCC 4 cut(s) 321, 348, 487, 1191
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 5 cut(s) 321, 348, 487, 1191, 1196
BmiI GGNNCC 8 cut(s) 51, 322, 349, 463, 595, 1198, 1209, 1227
BmrFI CCNGG 2 cut(s) 529, 546
BmsI GCATC 2 cut(s) 662, 847
BpmI CTGGAG 1 cut(s) 514
Bpu10I CCTNAGC 1 cut(s) 654
Bpu1102I GCTNAGC 2 cut(s) 861, 984
BpuMI CCSGG 1 cut(s) 529
BsaAI YACGTR 1 cut(s) 941
BsaBI GATNNNNATC 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 1012
BsaJI CCNNGG 1 cut(s) 1229
BsaWI WCCGGW 1 cut(s) 970
Bsc4I CCNNNNNNNGG 2 cut(s) 1204, 1221
Bse1I ACTGG 1 cut(s) 259
Bse21I CCTNAGG 1 cut(s) 237
Bse3DI GCAATG 3 cut(s) 301, 675, 710
Bse8I GATNNNNATC 1 cut(s) 393
BseAI TCCGGA 1 cut(s) 970
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 1229
BseGI GGATG 4 cut(s) 106, 153, 862, 877
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 1204, 1221
BseMI GCAATG 3 cut(s) 301, 675, 710
BseMII CTCAG 5 cut(s) 251, 507, 668, 759, 975
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 1050
BseXI GCAGC 4 cut(s) 193, 491, 757, 883
BseYI CCCAGC 1 cut(s) 842
BshFI GGCC 4 cut(s) 74, 527, 937, 1197
BshNI GGYRCC 1 cut(s) 461
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 4 cut(s) 528, 971, 1194, 1215
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 2 cut(s) 1204, 1221
BsmAI GTCTC 1 cut(s) 1281
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 4 cut(s) 74, 527, 937, 1197
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 54, 1228
Bsp13I TCCGGA 1 cut(s) 970
Bsp143I GATC 7 cut(s) 103, 388, 814, 929, 943, 1114, 1207
Bsp1720I GCTNAGC 2 cut(s) 861, 984
BspACI CCGC 1 cut(s) 1009
BspANI GGCC 4 cut(s) 74, 527, 937, 1197
BspCNI CTCAG 5 cut(s) 250, 508, 667, 758, 976
BspEI TCCGGA 1 cut(s) 970
BspLI GGNNCC 8 cut(s) 51, 322, 349, 463, 595, 1198, 1209, 1227
BspPI GGATC 6 cut(s) 111, 383, 809, 1109, 1202, 1215
BspT107I GGYRCC 1 cut(s) 461
BsrDI GCAATG 3 cut(s) 301, 675, 710
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 1229
BssMI GATC 7 cut(s) 103, 388, 814, 929, 943, 1114, 1207
BssNI GRCGYC 1 cut(s) 1012
BssT1I CCWWGG 1 cut(s) 1229
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 4 cut(s) 284, 705, 920, 1269
BstACI GRCGYC 1 cut(s) 1012
BstAPI GCANNNNNTGC 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 941
BstC8I GCNNGC 5 cut(s) 211, 502, 735, 827, 901
BstDEI CTNAG 7 cut(s) 237, 516, 654, 745, 861, 984, 1035
BstF5I GGATG 4 cut(s) 106, 153, 862, 877
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 7 cut(s) 106, 391, 817, 932, 946, 1117, 1210
BstMAI GTCTC 1 cut(s) 1281
BstMBI GATC 7 cut(s) 103, 388, 814, 929, 943, 1114, 1207
BstMWI GCNNNNNNNGC 4 cut(s) 203, 215, 541, 770
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 2 cut(s) 638, 1028
BstSCI CCNGG 2 cut(s) 527, 544
BstV1I GCAGC 4 cut(s) 193, 491, 757, 883
BstX2I RGATCY 2 cut(s) 929, 1207
BstYI RGATCY 2 cut(s) 929, 1207
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 4 cut(s) 74, 527, 937, 1197
BtsCI GGATG 4 cut(s) 106, 153, 862, 877
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 4 cut(s) 280, 465, 716, 765
Cac8I GCNNGC 5 cut(s) 211, 502, 735, 827, 901
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 5 cut(s) 321, 348, 487, 1191, 1196
CseI GACGC 2 cut(s) 83, 1001
Csp6I GTAC 1 cut(s) 163
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviAII CATG 5 cut(s) 70, 188, 541, 635, 1025
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 7 cut(s) 237, 516, 654, 745, 861, 984, 1035
DpnI GATC 7 cut(s) 105, 390, 816, 931, 945, 1116, 1209
DpnII GATC 7 cut(s) 103, 388, 814, 929, 943, 1114, 1207
DraI TTTAAA 1 cut(s) 649
EaeI YGGCCR 3 cut(s) 72, 525, 935
Eco130I CCWWGG 1 cut(s) 1229
Eco24I GRGCYC 2 cut(s) 54, 1228
Eco47I GGWCC 4 cut(s) 321, 348, 487, 1191
Eco72I CACGTG 1 cut(s) 941
Eco81I CCTNAGG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 960
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 1229
EcoT22I ATGCAT 1 cut(s) 677
EcoT38I GRGCYC 2 cut(s) 54, 1228
ErhI CCWWGG 1 cut(s) 1229
FaeI CATG 5 cut(s) 73, 191, 544, 638, 1028
FalI AAGNNNNNCTT 2 cut(s) 984, 1016
FaqI GGGAC 1 cut(s) 361
FatI CATG 5 cut(s) 69, 187, 540, 634, 1024
Fnu4HI GCNGC 5 cut(s) 207, 505, 771, 897, 1010
FokI GGATG 4 cut(s) 93, 160, 869, 884
FriOI GRGCYC 2 cut(s) 54, 1228
Fsp4HI GCNGC 5 cut(s) 207, 505, 771, 897, 1010
FspBI CTAG 3 cut(s) 414, 822, 882
GlaI GCGC 1 cut(s) 21
GluI GCNGC 5 cut(s) 207, 505, 771, 897, 1010
GsaI CCCAGC 1 cut(s) 846
GsuI CTGGAG 1 cut(s) 514
HaeIII GGCC 4 cut(s) 74, 527, 937, 1197
HapII CCGG 4 cut(s) 528, 971, 1194, 1215
HgaI GACGC 2 cut(s) 83, 1001
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 1012
Hin1II CATG 5 cut(s) 73, 191, 544, 638, 1028
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 4 cut(s) 82, 743, 1175, 1289
HpaII CCGG 4 cut(s) 528, 971, 1194, 1215
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 4 cut(s) 111, 604, 759, 1017
Hpy188III TCNNGA 6 cut(s) 270, 308, 493, 971, 1001, 1251
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 1 cut(s) 99
HpyAV CCTTC 4 cut(s) 22, 122, 609, 828
HpyCH4III ACNGT 4 cut(s) 284, 705, 920, 1269
HpyCH4IV ACGT 2 cut(s) 754, 940
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 215, 541, 770
HpyF3I CTNAG 7 cut(s) 237, 516, 654, 745, 861, 984, 1035
HpySE526I ACGT 2 cut(s) 754, 940
Hsp92I GRCGYC 1 cut(s) 1012
Hsp92II CATG 5 cut(s) 73, 191, 544, 638, 1028
HspAI GCGC 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 970
Kzo9I GATC 7 cut(s) 103, 388, 814, 929, 943, 1114, 1207
LmnI GCTCC 5 cut(s) 49, 184, 562, 599, 1231
Lsp1109I GCAGC 4 cut(s) 193, 491, 757, 883
LweI GCATC 2 cut(s) 662, 847
MaeI CTAG 3 cut(s) 414, 822, 882
MaeII ACGT 2 cut(s) 754, 940
MaeIII GTNAC 3 cut(s) 136, 424, 567
MalI GATC 7 cut(s) 105, 390, 816, 931, 945, 1116, 1209
MboI GATC 7 cut(s) 103, 388, 814, 929, 943, 1114, 1207
MboII GAAGA 8 cut(s) 22, 320, 446, 617, 887, 897, 1092, 1114
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 2 cut(s) 929, 1207
MhlI GDGCHC 2 cut(s) 54, 1228
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 5 cut(s) 43, 224, 738, 960, 1257
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 2 cut(s) 737, 1283
MnlI CCTC 8 cut(s) 138, 246, 500, 663, 771, 1068, 1071, 1288
Mox20I TGGCCA 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 677
MroI TCCGGA 1 cut(s) 970
MroXI GAANNNNTTC 1 cut(s) 1179
MscI TGGCCA 1 cut(s) 74
MseI TTAA 5 cut(s) 315, 353, 648, 690, 1202
MslI CAYNNNNRTG 4 cut(s) 111, 557, 1029, 1071
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 4 cut(s) 528, 971, 1194, 1215
MspR9I CCNGG 2 cut(s) 529, 546
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 203, 215, 541, 770
NciI CCSGG 1 cut(s) 529
NdeII GATC 7 cut(s) 103, 388, 814, 929, 943, 1114, 1207
NlaIII CATG 5 cut(s) 73, 191, 544, 638, 1028
NlaIV GGNNCC 8 cut(s) 51, 322, 349, 463, 595, 1198, 1209, 1227
NmeAIII GCCGAG 1 cut(s) 913
NmuCI GTSAC 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 677
NspI RCATGY 2 cut(s) 638, 1028
OliI CACNNNNGTG 1 cut(s) 557
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 1179
PfeI GAWTC 2 cut(s) 82, 1175
PkrI GCNGC 5 cut(s) 208, 506, 772, 898, 1011
PleI GAGTC 2 cut(s) 737, 1283
PmaCI CACGTG 1 cut(s) 941
PmlI CACGTG 1 cut(s) 941
PpsI GAGTC 2 cut(s) 737, 1283
Ppu21I YACGTR 1 cut(s) 941
PpuMI RGGWCCY 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 544
PspCI CACGTG 1 cut(s) 941
PspFI CCCAGC 1 cut(s) 842
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 8 cut(s) 51, 322, 349, 463, 595, 1198, 1209, 1227
PspPI GGNCC 5 cut(s) 321, 348, 487, 1191, 1196
PspPPI RGGWCCY 1 cut(s) 348
PsuI RGATCY 2 cut(s) 929, 1207
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 4 cut(s) 111, 557, 1029, 1071
SaqAI TTAA 5 cut(s) 315, 353, 648, 690, 1202
SatI GCNGC 5 cut(s) 207, 505, 771, 897, 1010
Sau3AI GATC 7 cut(s) 103, 388, 814, 929, 943, 1114, 1207
Sau96I GGNCC 5 cut(s) 321, 348, 487, 1191, 1196
SchI GAGTC 2 cut(s) 737, 1283
ScrFI CCNGG 2 cut(s) 529, 546
SduI GDGCHC 2 cut(s) 54, 1228
SfaNI GCATC 2 cut(s) 662, 847
SinI GGWCC 4 cut(s) 321, 348, 487, 1191
SmiMI CAYNNNNRTG 4 cut(s) 111, 557, 1029, 1071
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 5 cut(s) 43, 224, 738, 960, 1257
SsiI CCGC 1 cut(s) 1009
SspI AATATT 1 cut(s) 611
SspMI CTAG 3 cut(s) 414, 822, 882
StyD4I CCNGG 2 cut(s) 527, 544
StyI CCWWGG 1 cut(s) 1229
TaaI ACNGT 4 cut(s) 284, 705, 920, 1269
TaiI ACGT 2 cut(s) 757, 943
TaqI TCGA 4 cut(s) 143, 439, 946, 1125
TasI AATT 5 cut(s) 43, 224, 738, 960, 1257
TauI GCSGC 1 cut(s) 1012
TfiI GAWTC 2 cut(s) 82, 1175
Tru1I TTAA 5 cut(s) 315, 353, 648, 690, 1202
Tru9I TTAA 5 cut(s) 315, 353, 648, 690, 1202
TscAI CASTG 4 cut(s) 287, 472, 723, 772
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 4 cut(s) 206, 504, 770, 896
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 6 cut(s) 58, 293, 369, 798, 888, 1250
TspRI CASTG 4 cut(s) 287, 472, 723, 772
VpaK11BI GGWCC 4 cut(s) 321, 348, 487, 1191
XapI RAATTY 3 cut(s) 224, 960, 1257
XceI RCATGY 2 cut(s) 638, 1028
XcmI CCANNNNNNNNNTGG 2 cut(s) 266, 850
XmnI GAANNNNTTC 1 cut(s) 1179
XspI CTAG 3 cut(s) 414, 822, 882
Zsp2I ATGCAT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.