Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001548

Physical Location & Seq

Genomic Coordinates Reverse (-)

43352351 .. 43356794

Gene Structure 4444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G019800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCCAGAGAGATTCTCATCCTACGACGTTTGGATCATCCGAATGTTATAAAGTTGGAAGGTTTAGTCACGTCGAGGATGTCATGTAGTTTGTACCTTGTATTTGAATATATGGAGCATGATTTGGCAGGACTTGCTGCAAGCCCTGCAATCAAGTTCACAGAGCCTCAGGTTAAATGCTATATGCACCAGATATTATCGGGTCTTGAACACTGTCACAACCGCAATGTGCTTCATCGTGACATTAAAGGGTCCAATCTTCTTATTGACAATGGTGGAATCTTAAAGATTGCTGATTTTGGATTGGCTTCGTTCTTTGATCCTAATCACAAGCAACCAATGACTAGTAGAGTAGTTACTCTATGGTATCGACCCCCAGAGCTTCTCCTTGGTGCCACTGATTATGGTGTAGGTGTGGACCTCTGGAGTGCTGGCTGCATTTTAGCTGAGTTGTTGGCTGGGAAGCCAATCATGCCTGGTCGCACAGAAGTGGAGCAGTTACACAAGATATTCAAGTTATGTGGCTCCCCTTCGGAAGAATATTGGAAAAAGTCAAAGTTGCCACATGCAACCATTTTTAAACCTCAGCAATCATACAAAAGATGCATTGCAGAAACCTTTAAAGACTTTCCACCATCATCATTGCCACTGATTGACACCCTCCTTTCAATTGATCCAGCTCAACGTCAGACTGCCACTGCTGCATTGAGGAATGAATTTTTCACAACCAAACCTTATGCTTGTGATCCTTCTAGCCTCCCAAAATATCCACCCAGCAAAGAAATGGATGCTAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCTGCTGGAAAATCTAATGCAGATGGTGTAAGGAGATCTCGGCCACGTGATCGAGCTGTTAGGGGAATTCCTGTTCCGGAAGCCAATGCTGAGCTTCAAGCCAATCTTGATAGGCGGCGTCTAATAACACATGCAAATGCAAAGAGCAAGAGCGAGAAGTTTCCTCCTCCACACCAAGATGGAACACTTGGCTATACTTTAGGTTCTTCAAATCACATTGATCCTGTTTTCGATCCCCCTGATGTTCCATTCAGTTCCACAAACTTCTCATATTCAAAAGAATCCATTCAAACTTGGTCTGGCCCTTTAATAGACCCTGCTGGAGTAGGGGCTCCAAGGAGAAAGAAACACTCATCAGGACAAATTCATTCACAGTCAAAGACCTCAAAAAGAGACCCAAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

410

Amino Acids

45.82

Weight (kDa)

9.39

Isoelectric Point (pI)

60.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 241	6.4e-55	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 170	2e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54610 AT1G54610 AT1G54610 AT3G05050 AT3G05050 AT3G05050
fragaria_vesca	FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_4g17190 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100 FvH4_6g04100
malus_domestica	MD02G1048200.v1.1 MD04G1216500.v1.1 MD12G1233100.v1.1 MD13G1173900.v1.1 MD16G1175000.v1.1
prunus_persica	Prupe.1G142100_v2.0.a1 Prupe.1G142100_v2.0.a1 Prupe.6G336200_v2.0.a1 Prupe.6G336200_v2.0.a1
pyrus_communis	pycom04g19240 pycom12g21560
rosa_chinensis	RchiOBHm_Chr3g0452651 RchiOBHm_Chr4g0420991
rosa_laevigata	RLG00000007715 RLG00000025575
rosa_multiflora	Rmu_sc0006508.1_g000002 Rmu_ssc0000156.1_g000011
rosa_roxburghii	Rroxscaffold_5G00363340 Rroxscaffold_6G00429690
rosa_rugosa	Rorug02G0642200 Rorug02G0642300 Rorug02G0642300 Rorug02G0642400 Rorug04G0167500 Rorug04G0167500
rosa_samantha	Rh3AG044600 Rh3BG046900 Rh3CG045400 Rh3DG045800 Rh4AG229000 Rh4BG232000 Rh4CG243600 Rh4DG227400
rosa_wichuraiana	Rw3G003480 Rw4G019800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	392
AccIII	TCCGGA	1 cut(s)	901
AciI	CCGC	2 cut(s)	223, 940
AclWI	GGATC	6 cut(s)	42, 314, 668, 740, 1040, 1052
AcoI	YGGCCR	2 cut(s)	3, 866
AcsI	RAATTY	3 cut(s)	716, 891, 1188
AcvI	CACGTG	1 cut(s)	872
AcyI	GRCGYC	1 cut(s)	943
AfaI	GTAC	1 cut(s)	95
AgsI	TTSAA	8 cut(s)	107, 209, 514, 669, 923, 1035, 1101, 1115
AhlI	ACTAGT	1 cut(s)	344
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	475
AleI	CACNNNNGTG	1 cut(s)	488
AloI	GAACNNNNNNTCC	2 cut(s)	882, 914
AluBI	AGCT	8 cut(s)	382, 446, 680, 796, 812, 827, 881, 919
AluI	AGCT	8 cut(s)	382, 446, 680, 796, 812, 827, 881, 919
Alw26I	GTCTC	1 cut(s)	1212
AlwI	GGATC	6 cut(s)	42, 314, 668, 740, 1040, 1052
Aor13HI	TCCGGA	1 cut(s)	901
AoxI	GGCC	3 cut(s)	3, 866, 1126
ApeKI	GCWGC	4 cut(s)	137, 435, 701, 827
ApoI	RAATTY	3 cut(s)	716, 891, 1188
Asp700I	GAANNNNTTC	1 cut(s)	1110
AspS9I	GGNCC	3 cut(s)	252, 418, 1127
AvaII	GGWCC	2 cut(s)	252, 418
AxyI	CCTNAGG	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	1159
BbrPI	CACGTG	1 cut(s)	872
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	4 cut(s)	124, 422, 688, 814
BccI	CCATC	3 cut(s)	643, 842, 998
BciT130I	CCWGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	1212
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	3 cut(s)	345, 753, 813
BglII	AGATCT	1 cut(s)	860
BisI	GCNGC	5 cut(s)	138, 436, 702, 828, 941
BlpI	GCTNAGC	2 cut(s)	792, 915
BlsI	GCNGC	5 cut(s)	139, 437, 703, 829, 942
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	2 cut(s)	252, 418
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	3 cut(s)	252, 418, 1127
BmiI	GGNNCC	4 cut(s)	253, 394, 526, 1158
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	2 cut(s)	593, 778
BplI	GAGNNNNNCTC	1 cut(s)	32
BpmI	CTGGAG	2 cut(s)	445, 1167
Bpu10I	CCTNAGC	1 cut(s)	585
Bpu1102I	GCTNAGC	2 cut(s)	792, 915
BsaAI	YACGTR	1 cut(s)	872
BsaBI	GATNNNNATC	2 cut(s)	17, 324
BsaHI	GRCGYC	1 cut(s)	943
BsaI	GGTCTC	1 cut(s)	1212
BsaJI	CCNNGG	2 cut(s)	388, 1160
BsaWI	WCCGGW	1 cut(s)	901
Bse21I	CCTNAGG	1 cut(s)	168
Bse3DI	GCAATG	3 cut(s)	232, 606, 641
Bse8I	GATNNNNATC	2 cut(s)	17, 324
BseAI	TCCGGA	1 cut(s)	901
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	388, 1160
BseGI	GGATG	5 cut(s)	18, 37, 84, 793, 808
BseJI	GATNNNNATC	2 cut(s)	17, 324
BseMI	GCAATG	3 cut(s)	232, 606, 641
BseMII	CTCAG	4 cut(s)	182, 438, 599, 906
BseRI	GAGGAG	1 cut(s)	981
BseXI	GCAGC	4 cut(s)	124, 422, 688, 814
BseYI	CCCAGC	2 cut(s)	458, 773
BshFI	GGCC	3 cut(s)	5, 868, 1128
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	902
BsmAI	GTCTC	1 cut(s)	1212
BsnI	GGCC	3 cut(s)	5, 868, 1128
Bso31I	GGTCTC	1 cut(s)	1212
Bsp1286I	GDGCHC	1 cut(s)	1159
Bsp13I	TCCGGA	1 cut(s)	901
Bsp143I	GATC	8 cut(s)	34, 319, 673, 745, 860, 874, 1045, 1057
Bsp1720I	GCTNAGC	2 cut(s)	792, 915
BspACI	CCGC	2 cut(s)	223, 940
BspANI	GGCC	3 cut(s)	5, 868, 1128
BspCNI	CTCAG	4 cut(s)	181, 439, 598, 907
BspEI	TCCGGA	1 cut(s)	901
BspLI	GGNNCC	4 cut(s)	253, 394, 526, 1158
BspPI	GGATC	6 cut(s)	42, 314, 668, 740, 1040, 1052
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	1212
BsrDI	GCAATG	3 cut(s)	232, 606, 641
BssECI	CCNNGG	2 cut(s)	388, 1160
BssMI	GATC	8 cut(s)	34, 319, 673, 745, 860, 874, 1045, 1057
BssNI	GRCGYC	1 cut(s)	943
BssT1I	CCWWGG	2 cut(s)	388, 1160
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	215, 1200
BstACI	GRCGYC	1 cut(s)	943
BstAPI	GCANNNNNTGC	2 cut(s)	134, 146
BstBAI	YACGTR	1 cut(s)	872
BstC8I	GCNNGC	2 cut(s)	142, 433
BstDEI	CTNAG	5 cut(s)	168, 447, 585, 792, 915
BstF5I	GGATG	5 cut(s)	18, 37, 84, 793, 808
BstKTI	GATC	8 cut(s)	37, 322, 676, 748, 863, 877, 1048, 1060
BstMAI	GTCTC	1 cut(s)	1212
BstMBI	GATC	8 cut(s)	34, 319, 673, 745, 860, 874, 1045, 1057
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 146, 472, 701
BstNI	CCWGG	1 cut(s)	477
BstNSI	RCATGY	2 cut(s)	569, 959
BstSCI	CCNGG	1 cut(s)	475
BstV1I	GCAGC	4 cut(s)	124, 422, 688, 814
BstX2I	RGATCY	1 cut(s)	860
BstYI	RGATCY	1 cut(s)	860
Bsu36I	CCTNAGG	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	5, 868, 1128
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	5 cut(s)	18, 37, 84, 793, 808
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	4 cut(s)	211, 396, 647, 696
Cac8I	GCNNGC	2 cut(s)	142, 433
Cfr13I	GGNCC	3 cut(s)	252, 418, 1127
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	1 cut(s)	94
CspCI	CAANNNNNGTGG	2 cut(s)	502, 537
CviAII	CATG	5 cut(s)	84, 119, 472, 566, 956
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	5 cut(s)	168, 447, 585, 792, 915
DpnI	GATC	8 cut(s)	36, 321, 675, 747, 862, 876, 1047, 1059
DpnII	GATC	8 cut(s)	34, 319, 673, 745, 860, 874, 1045, 1057
DraI	TTTAAA	2 cut(s)	580, 622
EaeI	YGGCCR	2 cut(s)	3, 866
Eco130I	CCWWGG	2 cut(s)	388, 1160
Eco24I	GRGCYC	1 cut(s)	1159
Eco31I	GGTCTC	1 cut(s)	1212
Eco47I	GGWCC	2 cut(s)	252, 418
Eco72I	CACGTG	1 cut(s)	872
Eco81I	CCTNAGG	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	891
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	2 cut(s)	388, 1160
EcoT22I	ATGCAT	1 cut(s)	608
EcoT38I	GRGCYC	1 cut(s)	1159
ErhI	CCWWGG	2 cut(s)	388, 1160
FaeI	CATG	5 cut(s)	87, 122, 475, 569, 959
FalI	AAGNNNNNCTT	2 cut(s)	915, 947
FatI	CATG	5 cut(s)	83, 118, 471, 565, 955
Fnu4HI	GCNGC	5 cut(s)	138, 436, 702, 828, 941
FokI	GGATG	5 cut(s)	5, 24, 91, 800, 815
FriOI	GRGCYC	1 cut(s)	1159
Fsp4HI	GCNGC	5 cut(s)	138, 436, 702, 828, 941
FspBI	CTAG	3 cut(s)	345, 753, 813
GluI	GCNGC	5 cut(s)	138, 436, 702, 828, 941
GsaI	CCCAGC	2 cut(s)	462, 777
GsuI	CTGGAG	2 cut(s)	445, 1167
HaeIII	GGCC	3 cut(s)	5, 868, 1128
HapII	CCGG	1 cut(s)	902
HgaI	GACGC	1 cut(s)	932
Hin1I	GRCGYC	1 cut(s)	943
Hin1II	CATG	5 cut(s)	87, 122, 475, 569, 959
HinfI	GANTC	3 cut(s)	13, 279, 1106
HpaII	CCGG	1 cut(s)	902
Hpy166II	GTNNAC	2 cut(s)	159, 418
Hpy188I	TCNGA	3 cut(s)	42, 535, 690
Hpy188III	TCNNGA	6 cut(s)	206, 239, 424, 902, 932, 1182
Hpy8I	GTNNAC	2 cut(s)	159, 418
Hpy99I	CGWCG	2 cut(s)	30, 76
HpyAV	CCTTC	3 cut(s)	53, 540, 759
HpyCH4III	ACNGT	2 cut(s)	215, 1200
HpyCH4IV	ACGT	4 cut(s)	28, 71, 685, 871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 146, 472, 701
HpyF3I	CTNAG	5 cut(s)	168, 447, 585, 792, 915
HpySE526I	ACGT	4 cut(s)	28, 71, 685, 871
Hsp92I	GRCGYC	1 cut(s)	943
Hsp92II	CATG	5 cut(s)	87, 122, 475, 569, 959
Kpn2I	TCCGGA	1 cut(s)	901
Kzo9I	GATC	8 cut(s)	34, 319, 673, 745, 860, 874, 1045, 1057
LmnI	GCTCC	4 cut(s)	115, 493, 530, 1162
Lsp1109I	GCAGC	4 cut(s)	124, 422, 688, 814
LweI	GCATC	2 cut(s)	593, 778
MaeI	CTAG	3 cut(s)	345, 753, 813
MaeII	ACGT	4 cut(s)	28, 71, 685, 871
MaeIII	GTNAC	5 cut(s)	67, 215, 239, 355, 498
MalI	GATC	8 cut(s)	36, 321, 675, 747, 862, 876, 1047, 1059
MboI	GATC	8 cut(s)	34, 319, 673, 745, 860, 874, 1045, 1057
MboII	GAAGA	5 cut(s)	251, 548, 818, 828, 1023
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	1 cut(s)	860
MhlI	GDGCHC	1 cut(s)	1159
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	669, 716, 891, 1188
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	36
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	608
MroI	TCCGGA	1 cut(s)	901
MroXI	GAANNNNTTC	1 cut(s)	1110
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	174, 246, 284, 579, 621, 1133
MslI	CAYNNNNRTG	4 cut(s)	42, 488, 960, 1002
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	902
MspR9I	CCNGG	1 cut(s)	477
MunI	CAATTG	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	4 cut(s)	134, 146, 472, 701
NdeII	GATC	8 cut(s)	34, 319, 673, 745, 860, 874, 1045, 1057
NlaIII	CATG	5 cut(s)	87, 122, 475, 569, 959
NlaIV	GGNNCC	4 cut(s)	253, 394, 526, 1158
NmeAIII	GCCGAG	1 cut(s)	844
NmuCI	GTSAC	3 cut(s)	67, 215, 239
NsiI	ATGCAT	1 cut(s)	608
NspI	RCATGY	2 cut(s)	569, 959
OliI	CACNNNNGTG	1 cut(s)	488
PdmI	GAANNNNTTC	1 cut(s)	1110
PfeI	GAWTC	3 cut(s)	13, 279, 1106
PkrI	GCNGC	5 cut(s)	139, 437, 703, 829, 942
PmaCI	CACGTG	1 cut(s)	872
PmlI	CACGTG	1 cut(s)	872
Ppu21I	YACGTR	1 cut(s)	872
PsiI	TTATAA	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	475
PspCI	CACGTG	1 cut(s)	872
PspFI	CCCAGC	2 cut(s)	458, 773
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	4 cut(s)	253, 394, 526, 1158
PspPI	GGNCC	3 cut(s)	252, 418, 1127
PsuI	RGATCY	1 cut(s)	860
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	4 cut(s)	42, 488, 960, 1002
SaqAI	TTAA	6 cut(s)	174, 246, 284, 579, 621, 1133
SatI	GCNGC	5 cut(s)	138, 436, 702, 828, 941
Sau3AI	GATC	8 cut(s)	34, 319, 673, 745, 860, 874, 1045, 1057
Sau96I	GGNCC	3 cut(s)	252, 418, 1127
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	1159
SfaNI	GCATC	2 cut(s)	593, 778
SinI	GGWCC	2 cut(s)	252, 418
SmiMI	CAYNNNNRTG	4 cut(s)	42, 488, 960, 1002
SpeI	ACTAGT	1 cut(s)	344
Sse9I	AATT	4 cut(s)	669, 716, 891, 1188
SsiI	CCGC	2 cut(s)	223, 940
SspI	AATATT	1 cut(s)	542
SspMI	CTAG	3 cut(s)	345, 753, 813
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	2 cut(s)	388, 1160
TaaI	ACNGT	2 cut(s)	215, 1200
TaiI	ACGT	4 cut(s)	31, 74, 688, 874
TaqI	TCGA	4 cut(s)	74, 370, 877, 1056
TasI	AATT	4 cut(s)	669, 716, 891, 1188
TauI	GCSGC	1 cut(s)	943
TfiI	GAWTC	3 cut(s)	13, 279, 1106
Tru1I	TTAA	6 cut(s)	174, 246, 284, 579, 621, 1133
Tru9I	TTAA	6 cut(s)	174, 246, 284, 579, 621, 1133
TscAI	CASTG	4 cut(s)	218, 403, 654, 703
TseFI	GTSAC	3 cut(s)	67, 215, 239
TseI	GCWGC	4 cut(s)	137, 435, 701, 827
Tsp45I	GTSAC	3 cut(s)	67, 215, 239
TspDTI	ATGAA	4 cut(s)	224, 729, 819, 1181
TspRI	CASTG	4 cut(s)	218, 403, 654, 703
VpaK11BI	GGWCC	2 cut(s)	252, 418
XapI	RAATTY	3 cut(s)	716, 891, 1188
XceI	RCATGY	2 cut(s)	569, 959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	781
XmnI	GAANNNNTTC	1 cut(s)	1110
XspI	CTAG	3 cut(s)	345, 753, 813
Zsp2I	ATGCAT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.