AT5G19650

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016147
Physical Location & Seq
Reverse (-)
6639455 .. 6640408
954 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19650.1

Sequence Viewer

Length: 666 bp
ATGGAGAAGAGAATGAAGCTCCGGGTTTCAAGAATAGTCCGGTCATCTTTAAGCTCTTGCCGACCACGAGATCTATACGACGTCGTCGAGACTTGTGCTGTTACAAGTAAAGCAACGTCTTCCGAGAGGTTCTTCGTTACCAAAGCCAAAACCAAAACTCCATCACGACCAAAGAGTCATGCTTCTTCTTGCCCTCGTGCGTCACCTATATTCCCACCAAACCCTTTCTACGAAGAGAGCCGTTCATTTCGAGATTTAAGGAAGAAGGTCAAGACAAACAGGAAGCAAAGATCGCAGTTTGGTTCTGACCCTCTCTTTGCCTCACGTTTTAAGTCAACCGGGTCTTGGTACTGGTCTTGTAGTGAGGAAGAAGACGAAGGAGACAAAGAAGAAAGTGAAGATGATGATTCTGATACTCTCTTTTCTTCTAGAAGCTTCTCCTCGGACTCTTCAAAGGCGGAGAGTTTTGCGGTGGTGAAGAAGTCAAAGGATCCATATGAAGATTTCAGGACGTCAATGGTGGAGATGATTGTTGAGAGACAGATATTTGCACCGGCTGAGTTACAACAGCTTCTTCAGTGTTTTTTGTCGTTAAACTCTCGTCAACACCACAAAGTTATTGTCCAAGTGTTCTTAGAAATTTATGCCACCTTGTTCTCTCCCTAA

Protein Analysis

221

Amino Acids

25.47

Weight (kDa)

9.05

Isoelectric Point (pI)

67.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 162 - 219 1.5e-25 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19650
fragaria_vesca FvH4_1g04770
malus_domestica MD15G1184600.v1.1
prunus_persica Prupe.7G231400_v2.0.a1
pyrus_communis pycom02g03890
rosa_chinensis RchiOBHm_Chr2g0090371
rosa_laevigata RLG00000016103
rosa_multiflora Rmu_sc0004514.1_g000008
rosa_roxburghii Rroxscaffold_2G00151220
rosa_rugosa Rorug02G0006800
rosa_samantha Rh2AG052900 Rh2BG051700 Rh2CG053800 Rh2DG052900
rosa_wichuraiana Rw2G004400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 174
AatII GACGTC 2 cut(s) 84, 515
AciI CCGC 2 cut(s) 458, 470
AclWI GGATC 2 cut(s) 485, 498
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 560
AcyI GRCGYC 2 cut(s) 81, 512
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 2 cut(s) 30, 453
AluBI AGCT 4 cut(s) 19, 54, 435, 571
AluI AGCT 4 cut(s) 19, 54, 435, 571
Alw26I GTCTC 3 cut(s) 83, 375, 532
AlwI GGATC 2 cut(s) 485, 498
ApoI RAATTY 1 cut(s) 639
ArsI GACNNNNNNTTYG 4 cut(s) 299, 331, 606, 638
AsuC2I CCSGG 2 cut(s) 23, 340
AsuHPI GGTGA 2 cut(s) 195, 487
BamHI GGATCC 1 cut(s) 490
BauI CACGAG 2 cut(s) 66, 195
BbsI GAAGAC 2 cut(s) 111, 378
BccI CCATC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BcnI CCSGG 2 cut(s) 23, 340
BcoDI GTCTC 3 cut(s) 83, 375, 532
BfaI CTAG 1 cut(s) 429
BglII AGATCT 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 23, 340
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 2 cut(s) 23, 340
BpiI GAAGAC 2 cut(s) 111, 378
BpuMI CCSGG 2 cut(s) 23, 340
BsaHI GRCGYC 2 cut(s) 81, 512
BsaJI CCNNGG 1 cut(s) 441
BsaWI WCCGGW 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 553
Bse1I ACTGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 430
BsiSI CCGG 4 cut(s) 22, 40, 339, 554
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 3 cut(s) 83, 375, 532
Bsp143I GATC 3 cut(s) 70, 290, 490
BspACI CCGC 2 cut(s) 458, 470
BspCNI CTCAG 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 492
BspPI GGATC 2 cut(s) 485, 498
BsrFI RCCGGY 1 cut(s) 553
BsrI ACTGG 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 3 cut(s) 70, 290, 490
BssNI GRCGYC 2 cut(s) 81, 512
BssSI CACGAG 2 cut(s) 66, 195
Bst2BI CACGAG 2 cut(s) 66, 195
Bst6I CTCTTC 3 cut(s) 2, 228, 454
BstACI GRCGYC 2 cut(s) 81, 512
BstDEI CTNAG 2 cut(s) 558, 634
BstKTI GATC 3 cut(s) 73, 293, 493
BstMAI GTCTC 3 cut(s) 83, 375, 532
BstMBI GATC 3 cut(s) 70, 290, 490
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 21, 338
BstV2I GAAGAC 2 cut(s) 111, 378
BstX2I RGATCY 2 cut(s) 70, 490
BstYI RGATCY 2 cut(s) 70, 490
BtsIMutI CAGTG 1 cut(s) 584
Cfr10I RCCGGY 1 cut(s) 553
CseI GACGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 349
CviAII CATG 1 cut(s) 179
CviJI RGCY 7 cut(s) 19, 54, 146, 240, 435, 557, 571
CviKI_1 RGCY 7 cut(s) 19, 54, 146, 240, 435, 557, 571
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 2 cut(s) 558, 634
DpnI GATC 3 cut(s) 72, 292, 492
DpnII GATC 3 cut(s) 70, 290, 490
DrdI GACNNNNNNGTC 1 cut(s) 174
DseDI GACNNNNNNGTC 1 cut(s) 174
Eam1104I CTCTTC 3 cut(s) 2, 228, 454
EarI CTCTTC 3 cut(s) 2, 228, 454
EciI GGCGGA 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 560
FaeI CATG 1 cut(s) 182
FaiI YATR 6 cut(s) 76, 180, 209, 496, 498, 645
FatI CATG 1 cut(s) 178
FauNDI CATATG 1 cut(s) 496
FspBI CTAG 1 cut(s) 429
HapII CCGG 4 cut(s) 22, 40, 339, 554
HgaI GACGC 1 cut(s) 189
Hin1I GRCGYC 2 cut(s) 81, 512
Hin1II CATG 1 cut(s) 182
HincII GTYRAC 2 cut(s) 336, 605
HindII GTYRAC 2 cut(s) 336, 605
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 3 cut(s) 175, 407, 446
HpaII CCGG 4 cut(s) 22, 40, 339, 554
HphI GGTGA 2 cut(s) 195, 487
Hpy166II GTNNAC 2 cut(s) 336, 605
Hpy188I TCNGA 4 cut(s) 124, 307, 412, 445
Hpy188III TCNNGA 7 cut(s) 30, 88, 165, 251, 271, 429, 508
Hpy8I GTNNAC 2 cut(s) 336, 605
Hpy99I CGWCG 3 cut(s) 83, 86, 89
HpyAV CCTTC 2 cut(s) 259, 371
HpyCH4IV ACGT 4 cut(s) 81, 116, 325, 512
HpyCH4V TGCA 1 cut(s) 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 2 cut(s) 558, 634
HpySE526I ACGT 4 cut(s) 81, 116, 325, 512
Hsp92I GRCGYC 2 cut(s) 81, 512
Hsp92II CATG 1 cut(s) 182
Kzo9I GATC 3 cut(s) 70, 290, 490
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 7 cut(s) 35, 53, 265, 337, 352, 493, 567
MaeI CTAG 1 cut(s) 429
MaeII ACGT 4 cut(s) 81, 116, 325, 512
MaeIII GTNAC 4 cut(s) 100, 136, 201, 561
MalI GATC 3 cut(s) 72, 292, 492
MboI GATC 3 cut(s) 70, 290, 490
MflI RGATCY 2 cut(s) 70, 490
MluCI AATT 1 cut(s) 639
MlyI GAGTC 2 cut(s) 184, 440
MnlI CCTC 6 cut(s) 120, 204, 321, 331, 358, 451
MseI TTAA 4 cut(s) 50, 257, 330, 593
MspI CCGG 4 cut(s) 22, 40, 339, 554
MspR9I CCNGG 2 cut(s) 23, 340
MwoI GCNNNNNNNGC 1 cut(s) 292
NciI CCSGG 2 cut(s) 23, 340
NdeI CATATG 1 cut(s) 496
NdeII GATC 3 cut(s) 70, 290, 490
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 1 cut(s) 492
NmuCI GTSAC 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 407
PflFI GACNNNGTC 1 cut(s) 83
PleI GAGTC 2 cut(s) 183, 440
PpsI GAGTC 2 cut(s) 183, 440
PspN4I GGNNCC 1 cut(s) 492
PsuI RGATCY 2 cut(s) 70, 490
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 4 cut(s) 50, 257, 330, 593
Sau3AI GATC 3 cut(s) 70, 290, 490
SchI GAGTC 2 cut(s) 184, 440
ScrFI CCNGG 2 cut(s) 23, 340
Sse9I AATT 1 cut(s) 639
SsiI CCGC 2 cut(s) 458, 470
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 2 cut(s) 21, 338
TaiI ACGT 4 cut(s) 84, 119, 328, 515
TaqI TCGA 2 cut(s) 87, 250
TasI AATT 1 cut(s) 639
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 4 cut(s) 50, 257, 330, 593
Tru9I TTAA 4 cut(s) 50, 257, 330, 593
TscAI CASTG 1 cut(s) 584
TseFI GTSAC 1 cut(s) 201
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 3 cut(s) 29, 234, 513
TspRI CASTG 1 cut(s) 584
Tth111I GACNNNGTC 1 cut(s) 83
XapI RAATTY 1 cut(s) 639
XbaI TCTAGA 1 cut(s) 428
XspI CTAG 1 cut(s) 429
ZraI GACGTC 2 cut(s) 82, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.