Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016147

Physical Location & Seq

Genomic Coordinates Reverse (-)

88543712 .. 88545139

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGCATTTATATACAACCCAACCCTCCTCTTTCCTCCAAAACCCCCTCCTCTGCTCTCTCTCTCTCTCTCTCTCTGTACAACTCCTCTGTTTCTCTAACCTCTGTATTTTCTTTCTAATGGAAAACCGCTTCAAGCTAAAGCTCTCCCTCATGTTCCACAAGGCCTCACTCGGCACCTGCCGCTCACGCAGCAGCATCTCTGACGTGATCCAAAAAACTGATCACTCTCCTCCCAAGCCAGCTCCTCCTCCTCCTAAGCCTTTCCCGTCCATTTGCAGACCTAAATGCTCCGACGACCCGAAACAGCAACCCATCAACCACAGCTGCGTCATTTCCAGATCCAACACAGACCTCATACTCCCCAGACGCAAGATTTTCGAACGTCGCTCCCCATTTGTGAAGCCTGAAATCCCTCCCAATTCTCTGTTCTCGCATTCAAATCCATTCTACGAAGTTCATGAAAGCCATAGCTTTCGACAGAGAAAGAAGAGAGCGACCAAGAAGAAGAAGAAGAAGAAGAAGACGAGGAGTAAGAAAACCGATCTTTTCGCAATCAGCTCTTCTTCTTTGAATAGTAATCACTTTTACAATGGGTGGTGGTCTAGCAGTGAAGATGAAGAGAAAGAAGACGAGACTGATACTCTGTTTTCCTCGAACACTCACACTTCCGATTCATCCGGGTCTCGCCGGCTCCTGCGTTCGAGTTCTCAGCGGAAAGGTCAGAGCTTTGGCCGGAGAAGAAGGGGTTCTGAGGTGGGTCTGATGCCATTGCAAGGAAAAGTGAAGGACAGCTTTGCTGTGGTGAAGAAATCTAGTGATCCTTACAACGATTTCAGAACATCAATGGTGGAAATGATCGTGGAGAAGCAGATATTTTCAGGCAAAGATCTTGACCGTCTCTTGCAGTGTTTTCTGAAGCTGAACTCGCCTCATCATCACAGAGTTATTATTGAGGTTTTCACTGAGATTTGGGAGGCTCTGTTCTCCAACTTGGGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

333

Amino Acids

38.26

Weight (kDa)

9.91

Isoelectric Point (pI)

66.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	271 - 328	9e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19650
fragaria_vesca	FvH4_1g04770
malus_domestica	MD15G1184600.v1.1
prunus_persica	Prupe.7G231400_v2.0.a1
pyrus_communis	pycom02g03890
rosa_chinensis	RchiOBHm_Chr2g0090371
rosa_laevigata	RLG00000016103
rosa_multiflora	Rmu_sc0004514.1_g000008
rosa_roxburghii	Rroxscaffold_2G00151220
rosa_rugosa	Rorug02G0006800
rosa_samantha	Rh2AG052900 Rh2BG051700 Rh2CG053800 Rh2DG052900
rosa_wichuraiana	Rw2G004400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	183
AciI	CCGC	3 cut(s)	127, 181, 712
AclWI	GGATC	3 cut(s)	202, 333, 812
AcoI	YGGCCR	1 cut(s)	730
AcuI	CTGAAG	1 cut(s)	935
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	773, 993
AgsI	TTSAA	3 cut(s)	133, 438, 571
AjiI	CACGTC	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AloI	GAACNNNNNNTCC	2 cut(s)	965, 997
AluBI	AGCT	9 cut(s)	136, 142, 242, 324, 471, 558, 726, 792, 919
AluI	AGCT	9 cut(s)	136, 142, 242, 324, 471, 558, 726, 792, 919
Alw26I	GTCTC	3 cut(s)	626, 687, 902
AlwI	GGATC	3 cut(s)	202, 333, 812
AoxI	GGCC	2 cut(s)	162, 730
ApeKI	GCWGC	3 cut(s)	189, 192, 324
Asp700I	GAANNNNTTC	1 cut(s)	745
AsuC2I	CCSGG	1 cut(s)	679
AsuHPI	GGTGA	1 cut(s)	814
AsuII	TTCGAA	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	527, 633
BbvI	GCAGC	3 cut(s)	201, 204, 311
BccI	CCATC	1 cut(s)	320
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	679
BcoDI	GTCTC	3 cut(s)	626, 687, 902
BfaI	CTAG	2 cut(s)	603, 813
BfuAI	ACCTGC	1 cut(s)	185
BglII	AGATCT	1 cut(s)	886
BisI	GCNGC	4 cut(s)	181, 190, 193, 325
BlsI	GCNGC	4 cut(s)	182, 191, 194, 326
Bme1390I	CCNGG	1 cut(s)	679
BmgBI	CACGTC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	175, 692
BmrFI	CCNGG	1 cut(s)	679
BmsI	GCATC	2 cut(s)	204, 753
BpiI	GAAGAC	2 cut(s)	527, 633
Bpu10I	CCTNAGC	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	679
BsaI	GGTCTC	1 cut(s)	687
BsaXI	ACNNNNNCTCC	2 cut(s)	965, 995
Bsc4I	CCNNNNNNNGG	2 cut(s)	773, 993
Bse118I	RCCGGY	1 cut(s)	687
Bse3DI	GCAATG	1 cut(s)	767
BseGI	GGATG	1 cut(s)	674
BseLI	CCNNNNNNNGG	2 cut(s)	773, 993
BseMI	GCAATG	1 cut(s)	767
BseMII	CTCAG	3 cut(s)	722, 741, 954
BseRI	GAGGAG	8 cut(s)	16, 38, 74, 219, 234, 237, 240, 541
BseXI	GCAGC	3 cut(s)	201, 204, 311
BshFI	GGCC	2 cut(s)	164, 732
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	678, 688, 733
BslI	CCNNNNNNNGG	2 cut(s)	773, 993
BsmAI	GTCTC	3 cut(s)	626, 687, 902
BsmBI	CGTCTC	1 cut(s)	902
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	164, 732
Bso31I	GGTCTC	1 cut(s)	687
Bsp119I	TTCGAA	1 cut(s)	378
Bsp1407I	TGTACA	1 cut(s)	76
Bsp143I	GATC	7 cut(s)	207, 220, 338, 541, 817, 855, 886
BspACI	CCGC	3 cut(s)	127, 181, 712
BspANI	GGCC	2 cut(s)	164, 732
BspCNI	CTCAG	3 cut(s)	721, 742, 955
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	175, 692
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	3 cut(s)	202, 333, 812
BspQI	GCTCTTC	1 cut(s)	565
BspT104I	TTCGAA	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	687
BsrBI	CCGCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	767
BsrFI	RCCGGY	1 cut(s)	687
BsrGI	TGTACA	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	687
BssMI	GATC	7 cut(s)	207, 220, 338, 541, 817, 855, 886
Bst4CI	ACNGT	1 cut(s)	896
Bst6I	CTCTTC	3 cut(s)	482, 565, 612
BstAUI	TGTACA	1 cut(s)	76
BstBI	TTCGAA	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	240, 689
BstDEI	CTNAG	4 cut(s)	255, 708, 750, 963
BstF5I	GGATG	1 cut(s)	674
BstKTI	GATC	7 cut(s)	210, 223, 341, 544, 820, 858, 889
BstMAI	GTCTC	3 cut(s)	626, 687, 902
BstMBI	GATC	7 cut(s)	207, 220, 338, 541, 817, 855, 886
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 186, 189, 925
BstSCI	CCNGG	1 cut(s)	677
BstV1I	GCAGC	3 cut(s)	201, 204, 311
BstV2I	GAAGAC	2 cut(s)	527, 633
BstX2I	RGATCY	2 cut(s)	338, 886
BstYI	RGATCY	2 cut(s)	338, 886
BsuRI	GGCC	2 cut(s)	164, 732
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	674
BtsI	GCAGTG	2 cut(s)	613, 911
BtsIMutI	CAGTG	3 cut(s)	613, 911, 960
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	2 cut(s)	240, 689
CciI	TCATGA	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	687
CseI	GACGC	2 cut(s)	316, 375
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	2 cut(s)	151, 458
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	4 cut(s)	255, 708, 750, 963
DpnI	GATC	7 cut(s)	209, 222, 340, 543, 819, 857, 888
DpnII	GATC	7 cut(s)	207, 220, 338, 541, 817, 855, 886
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	3 cut(s)	482, 565, 612
EarI	CTCTTC	3 cut(s)	482, 565, 612
Eco147I	AGGCCT	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	687
Eco57I	CTGAAG	1 cut(s)	935
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	902
FaeI	CATG	2 cut(s)	154, 461
FaiI	YATR	6 cut(s)	10, 12, 152, 356, 459, 468
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FatI	CATG	2 cut(s)	150, 457
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	181, 190, 193, 325
FokI	GGATG	1 cut(s)	661
Fsp4HI	GCNGC	4 cut(s)	181, 190, 193, 325
FspBI	CTAG	2 cut(s)	603, 813
GluI	GCNGC	4 cut(s)	181, 190, 193, 325
HaeIII	GGCC	2 cut(s)	164, 732
HapII	CCGG	3 cut(s)	678, 688, 733
HgaI	GACGC	2 cut(s)	316, 375
Hin1II	CATG	2 cut(s)	154, 461
HinfI	GANTC	1 cut(s)	671
HpaII	CCGG	3 cut(s)	678, 688, 733
HphI	GGTGA	1 cut(s)	814
Hpy188I	TCNGA	8 cut(s)	202, 292, 670, 723, 751, 762, 836, 915
Hpy188III	TCNNGA	3 cut(s)	336, 458, 890
Hpy99I	CGWCG	2 cut(s)	296, 387
HpyAV	CCTTC	2 cut(s)	735, 778
HpyCH4III	ACNGT	1 cut(s)	896
HpyCH4IV	ACGT	2 cut(s)	204, 382
HpyCH4V	TGCA	4 cut(s)	4, 276, 772, 904
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 186, 189, 925
HpyF3I	CTNAG	4 cut(s)	255, 708, 750, 963
HpySE526I	ACGT	2 cut(s)	204, 382
Hsp92II	CATG	2 cut(s)	154, 461
KroI	GCCGGC	1 cut(s)	687
KroNI	GCCGGC	1 cut(s)	689
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	7 cut(s)	207, 220, 338, 541, 817, 855, 886
LguI	GCTCTTC	1 cut(s)	565
LmnI	GCTCC	4 cut(s)	247, 293, 392, 696
Lsp1109I	GCAGC	3 cut(s)	201, 204, 311
LweI	GCATC	2 cut(s)	204, 753
MaeI	CTAG	2 cut(s)	603, 813
MaeII	ACGT	2 cut(s)	204, 382
MalI	GATC	7 cut(s)	209, 222, 340, 543, 819, 857, 888
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	7 cut(s)	207, 220, 338, 541, 817, 855, 886
MflI	RGATCY	2 cut(s)	338, 886
MluCI	AATT	1 cut(s)	418
MmeI	TCCRAC	2 cut(s)	315, 366
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	687
MroXI	GAANNNNTTC	1 cut(s)	745
MspA1I	CMGCKG	2 cut(s)	324, 712
MspI	CCGG	3 cut(s)	678, 688, 733
MspR9I	CCNGG	1 cut(s)	679
Mva1269I	GAATGC	1 cut(s)	433
MwoI	GCNNNNNNNGC	4 cut(s)	180, 186, 189, 925
NaeI	GCCGGC	1 cut(s)	689
NciI	CCSGG	1 cut(s)	679
NdeII	GATC	7 cut(s)	207, 220, 338, 541, 817, 855, 886
NgoMIV	GCCGGC	1 cut(s)	687
NlaIII	CATG	2 cut(s)	154, 461
NlaIV	GGNNCC	2 cut(s)	175, 692
NmeAIII	GCCGAG	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	378
PagI	TCATGA	1 cut(s)	457
PaqCI	CACCTGC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	565
PctI	GAATGC	1 cut(s)	433
PdiI	GCCGGC	1 cut(s)	689
PdmI	GAANNNNTTC	1 cut(s)	745
PfeI	GAWTC	1 cut(s)	671
PkrI	GCNGC	4 cut(s)	182, 191, 194, 326
PspN4I	GGNNCC	2 cut(s)	175, 692
PsuI	RGATCY	2 cut(s)	338, 886
PvuII	CAGCTG	1 cut(s)	324
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	565
SatI	GCNGC	4 cut(s)	181, 190, 193, 325
Sau3AI	GATC	7 cut(s)	207, 220, 338, 541, 817, 855, 886
ScrFI	CCNGG	1 cut(s)	679
SfaNI	GCATC	2 cut(s)	204, 753
SfuI	TTCGAA	1 cut(s)	378
Sse9I	AATT	1 cut(s)	418
SseBI	AGGCCT	1 cut(s)	164
SsiI	CCGC	3 cut(s)	127, 181, 712
SspMI	CTAG	2 cut(s)	603, 813
StuI	AGGCCT	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	677
TaaI	ACNGT	1 cut(s)	896
TaiI	ACGT	2 cut(s)	207, 385
TaqI	TCGA	4 cut(s)	378, 475, 653, 701
TasI	AATT	1 cut(s)	418
TatI	WGTACW	1 cut(s)	76
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	671
TscAI	CASTG	3 cut(s)	613, 911, 967
TseI	GCWGC	3 cut(s)	189, 192, 324
TspDTI	ATGAA	4 cut(s)	446, 474, 630, 663
TspRI	CASTG	3 cut(s)	613, 911, 967
XmnI	GAANNNNTTC	1 cut(s)	745
XspI	CTAG	2 cut(s)	603, 813
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.