Rh2AG052900

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016147
Physical Location & Seq
Forward (+)
4135397 .. 4144864
9468 bp
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UTR
Exon/CDS
Intron
Rh2AG052900.1

Sequence Viewer

Length: 588 bp
ATGAAGATTCAGGGTCCTTATAGTTTTGCCAAGAGTTTAGGTCCTTTGGAAGTTTGTCCTCTAACCAGTGGACGAATTGGAAGCAAACATGAACATGTTGACAAAGATATGGAAAATCAAAATTGCAGATTGAAGAAATCAAAAAGGACGATGATAATATATAGTTTCTTTCCATATAGAACATGGAAAAGCAGTGAAGATGAAGAGAAAGAAGACGAGACTGATACTCTGTTTTCCTCGAACACTCACACTTCCGATTCGTCCGGGTCTCGCCGGCGACTGCGTTCGAGTTCTCAGCGGAAAGGTCAGAGCTTTGGCCGGAGAAGAGGGGGTTCTGAGGTGGGTCTGATGCCATTGCAAGGAAAAGTGAAGGACAGCTTTGCTGTGGTGAAGAAATCTAGTGATCCTTACAACGATTTCAGAACATCAATGGTGGAAATGATCGTGGAGAAGCAGATATTTTCAGGCAAAGATCTTGACCATCTCTTGCAGTGTTTTCTGAAGCTGAACTCGCCTCATCATCACAGAGTTATTATTGAGGTTTTCACTGAGATTTGGGAGGCTCTGTTCTCCAACTTGGGGACTTGA

Protein Analysis

195

Amino Acids

22.36

Weight (kDa)

9.24

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 133 - 190 4.4e-26 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19650
fragaria_vesca FvH4_1g04770
malus_domestica MD15G1184600.v1.1
prunus_persica Prupe.7G231400_v2.0.a1
pyrus_communis pycom02g03890
rosa_chinensis RchiOBHm_Chr2g0090371
rosa_laevigata RLG00000016103
rosa_multiflora Rmu_sc0004514.1_g000008
rosa_roxburghii Rroxscaffold_2G00151220
rosa_rugosa Rorug02G0006800
rosa_samantha Rh2AG052900 Rh2BG051700 Rh2CG053800 Rh2DG052900
rosa_wichuraiana Rw2G004400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 298
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 316
AcuI CTGAAG 1 cut(s) 521
AfiI CCNNNNNNNGG 2 cut(s) 359, 579
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 1 cut(s) 133
AloI GAACNNNNNNTCC 2 cut(s) 551, 583
AluBI AGCT 3 cut(s) 312, 378, 505
AluI AGCT 3 cut(s) 312, 378, 505
Alw26I GTCTC 2 cut(s) 212, 273
AlwI GGATC 1 cut(s) 398
AoxI GGCC 1 cut(s) 316
AspS9I GGNCC 2 cut(s) 14, 41
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 400
AvaII GGWCC 2 cut(s) 14, 41
BbsI GAAGAC 1 cut(s) 219
BccI CCATC 1 cut(s) 489
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 212, 273
BfaI CTAG 1 cut(s) 399
BglII AGATCT 1 cut(s) 472
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 2 cut(s) 14, 41
BmgT120I GGNCC 2 cut(s) 14, 41
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 579
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 353
BseLI CCNNNNNNNGG 2 cut(s) 359, 579
BseMI GCAATG 1 cut(s) 353
BseMII CTCAG 3 cut(s) 308, 327, 540
BseNI ACTGG 1 cut(s) 66
BshFI GGCC 1 cut(s) 318
BsiSI CCGG 3 cut(s) 264, 274, 319
BslI CCNNNNNNNGG 2 cut(s) 359, 579
BsmAI GTCTC 2 cut(s) 212, 273
BsnI GGCC 1 cut(s) 318
Bso31I GGTCTC 1 cut(s) 273
Bsp143I GATC 3 cut(s) 403, 441, 472
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 3 cut(s) 307, 328, 541
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 273
BssMI GATC 3 cut(s) 403, 441, 472
Bst6I CTCTTC 2 cut(s) 198, 319
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 3 cut(s) 294, 336, 549
BstKTI GATC 3 cut(s) 406, 444, 475
BstMAI GTCTC 2 cut(s) 212, 273
BstMBI GATC 3 cut(s) 403, 441, 472
BstMWI GCNNNNNNNGC 1 cut(s) 511
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 263
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 1 cut(s) 318
BtsI GCAGTG 2 cut(s) 199, 497
BtsIMutI CAGTG 4 cut(s) 73, 199, 497, 546
Cac8I GCNNGC 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 14, 41
CviAII CATG 3 cut(s) 89, 95, 183
CviJI RGCY 5 cut(s) 312, 318, 378, 505, 563
CviKI_1 RGCY 5 cut(s) 312, 318, 378, 505, 563
DdeI CTNAG 3 cut(s) 294, 336, 549
DpnI GATC 3 cut(s) 405, 443, 474
DpnII GATC 3 cut(s) 403, 441, 472
EaeI YGGCCR 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 198, 319
EarI CTCTTC 2 cut(s) 198, 319
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 2 cut(s) 14, 41
Eco57I CTGAAG 1 cut(s) 521
EcoO109I RGGNCCY 2 cut(s) 14, 41
FaeI CATG 3 cut(s) 92, 98, 186
FaiI YATR 9 cut(s) 21, 90, 96, 110, 160, 162, 175, 177, 184
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FatI CATG 3 cut(s) 88, 94, 182
FspBI CTAG 1 cut(s) 399
HaeIII GGCC 1 cut(s) 318
HapII CCGG 3 cut(s) 264, 274, 319
Hin1II CATG 3 cut(s) 92, 98, 186
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 2 cut(s) 7, 257
HpaII CCGG 3 cut(s) 264, 274, 319
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 2 cut(s) 71, 100
Hpy188I TCNGA 6 cut(s) 256, 309, 337, 348, 422, 501
Hpy188III TCNNGA 1 cut(s) 476
Hpy8I GTNNAC 2 cut(s) 71, 100
HpyAV CCTTC 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 126, 358, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 511
HpyF3I CTNAG 3 cut(s) 294, 336, 549
Hsp92II CATG 3 cut(s) 92, 98, 186
KroI GCCGGC 1 cut(s) 273
KroNI GCCGGC 1 cut(s) 275
Kzo9I GATC 3 cut(s) 403, 441, 472
LpnPI CCDG 5 cut(s) 79, 277, 287, 332, 450
LweI GCATC 1 cut(s) 339
MaeI CTAG 1 cut(s) 399
MalI GATC 3 cut(s) 405, 443, 474
MboI GATC 3 cut(s) 403, 441, 472
MboII GAAGA 7 cut(s) 16, 145, 209, 215, 224, 336, 403
MflI RGATCY 1 cut(s) 472
MluCI AATT 2 cut(s) 75, 121
MnlI CCTC 7 cut(s) 69, 247, 320, 331, 525, 532, 553
MreI CGCCGGCG 1 cut(s) 273
MroNI GCCGGC 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 3 cut(s) 264, 274, 319
MspR9I CCNGG 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 511
NaeI GCCGGC 1 cut(s) 275
NciI CCSGG 1 cut(s) 265
NdeII GATC 3 cut(s) 403, 441, 472
NgoMIV GCCGGC 1 cut(s) 273
NlaIII CATG 3 cut(s) 92, 98, 186
NlaIV GGNNCC 1 cut(s) 15
NspI RCATGY 1 cut(s) 98
PciI ACATGT 1 cut(s) 94
PdiI GCCGGC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 7, 257
PpuMI RGGWCCY 2 cut(s) 14, 41
PscI ACATGT 1 cut(s) 94
Psp5II RGGWCCY 2 cut(s) 14, 41
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 2 cut(s) 14, 41
PspPPI RGGWCCY 2 cut(s) 14, 41
PsuI RGATCY 1 cut(s) 472
RseI CAYNNNNRTG 1 cut(s) 93
Sau3AI GATC 3 cut(s) 403, 441, 472
Sau96I GGNCC 2 cut(s) 14, 41
ScrFI CCNGG 1 cut(s) 265
SetI ASST 7 cut(s) 43, 307, 314, 342, 380, 507, 543
SfaNI GCATC 1 cut(s) 339
SgrAI CRCCGGYG 1 cut(s) 273
SinI GGWCC 2 cut(s) 14, 41
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 2 cut(s) 75, 121
SsiI CCGC 1 cut(s) 298
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 263
TaqI TCGA 2 cut(s) 239, 287
TasI AATT 2 cut(s) 75, 121
TfiI GAWTC 2 cut(s) 7, 257
TscAI CASTG 4 cut(s) 73, 199, 497, 553
TspDTI ATGAA 3 cut(s) 17, 105, 216
TspRI CASTG 4 cut(s) 73, 199, 497, 553
VpaK11BI GGWCC 2 cut(s) 14, 41
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.