Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016147

Physical Location & Seq

Genomic Coordinates Forward (+)

3775569 .. 3793626

Gene Structure 18058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG052900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAGAACAGAAGGTTTCTCAGGAGGTGCCAGACCCAGTCAGGAGCATCAAGGTGGCAGTGAAGATGAAGAGAAAGAAGACGAGACTGATACTCTGTTTTCCTCGAACACTCACACTTCCGATTCGTCCGGGTCTCGCCGGCGACTGCGTTCGAGTTCTCAGCGGAAAGGTCAGAGCTTTGGCCGGAGAAGAGGGGGTTCTGAGGTGGGTCTGATGCCATTGCAAGGAAAAGTGAAGGACAGCTTTGCTGTGGTGAAGAAATCTAGTGATCCTTACAACGATTTCAGAACATCAATGGTGGAAATGATCGTGGAGAAGCAGATATTTTCAGGCAAAGATCTTGACCATCTCTTGCAGTGTTTTCTGAAGCTGAACTCGCCTCATCATCACAGAGTTATTATTGAGGTTTTCACTGAGATTTGGGAGGCTCTGTTCTCCAACTTGGGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

150

Amino Acids

16.88

Weight (kDa)

6.6

Isoelectric Point (pI)

66.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	88 - 145	2.6e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19650
fragaria_vesca	FvH4_1g04770
malus_domestica	MD15G1184600.v1.1
prunus_persica	Prupe.7G231400_v2.0.a1
pyrus_communis	pycom02g03890
rosa_chinensis	RchiOBHm_Chr2g0090371
rosa_laevigata	RLG00000016103
rosa_multiflora	Rmu_sc0004514.1_g000008
rosa_roxburghii	Rroxscaffold_2G00151220
rosa_rugosa	Rorug02G0006800
rosa_samantha	Rh2AG052900 Rh2BG051700 Rh2CG053800 Rh2DG052900
rosa_wichuraiana	Rw2G004400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	224, 444
AloI	GAACNNNNNNTCC	2 cut(s)	416, 448
AluBI	AGCT	3 cut(s)	177, 243, 370
AluI	AGCT	3 cut(s)	177, 243, 370
Alw26I	GTCTC	2 cut(s)	77, 138
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	181
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	84
BccI	CCATC	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	77, 138
BfaI	CTAG	1 cut(s)	264
BglII	AGATCT	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	130
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	2 cut(s)	55, 204
BmuI	ACTGGG	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 444
Bse118I	RCCGGY	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	224, 444
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	4 cut(s)	33, 173, 192, 405
BseNI	ACTGG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	129, 139, 184
BslI	CCNNNNNNNGG	2 cut(s)	224, 444
BsmAI	GTCTC	2 cut(s)	77, 138
BsnI	GGCC	1 cut(s)	183
Bso31I	GGTCTC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	268, 306, 337
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	4 cut(s)	32, 172, 193, 406
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	138
BssMI	GATC	3 cut(s)	268, 306, 337
Bst6I	CTCTTC	2 cut(s)	63, 184
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	4 cut(s)	19, 159, 201, 414
BstKTI	GATC	3 cut(s)	271, 309, 340
BstMAI	GTCTC	2 cut(s)	77, 138
BstMBI	GATC	3 cut(s)	268, 306, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	183
BtsI	GCAGTG	2 cut(s)	64, 362
BtsIMutI	CAGTG	3 cut(s)	64, 362, 411
Cac8I	GCNNGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	138
CviJI	RGCY	5 cut(s)	177, 183, 243, 370, 428
CviKI_1	RGCY	5 cut(s)	177, 183, 243, 370, 428
DdeI	CTNAG	4 cut(s)	19, 159, 201, 414
DpnI	GATC	3 cut(s)	270, 308, 339
DpnII	GATC	3 cut(s)	268, 306, 337
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	63, 184
EarI	CTCTTC	2 cut(s)	63, 184
Eco31I	GGTCTC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	386
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FspBI	CTAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	3 cut(s)	129, 139, 184
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	3 cut(s)	129, 139, 184
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	6 cut(s)	121, 174, 202, 213, 287, 366
Hpy188III	TCNNGA	3 cut(s)	21, 41, 341
HpyAV	CCTTC	2 cut(s)	5, 229
HpyCH4V	TGCA	2 cut(s)	223, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	4 cut(s)	19, 159, 201, 414
KroI	GCCGGC	1 cut(s)	138
KroNI	GCCGGC	1 cut(s)	140
Kzo9I	GATC	3 cut(s)	268, 306, 337
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	8 cut(s)	6, 26, 43, 49, 142, 152, 197, 315
LweI	GCATC	2 cut(s)	55, 204
MaeI	CTAG	1 cut(s)	264
MalI	GATC	3 cut(s)	270, 308, 339
MboI	GATC	3 cut(s)	268, 306, 337
MboII	GAAGA	5 cut(s)	74, 80, 89, 201, 268
MflI	RGATCY	1 cut(s)	337
MnlI	CCTC	7 cut(s)	17, 112, 185, 196, 390, 397, 418
MreI	CGCCGGCG	1 cut(s)	138
MroNI	GCCGGC	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	3 cut(s)	129, 139, 184
MspR9I	CCNGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	376
NaeI	GCCGGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	3 cut(s)	268, 306, 337
NgoMIV	GCCGGC	1 cut(s)	138
NlaIV	GGNNCC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	122
PflFI	GACNNNGTC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	337
PsyI	GACNNNGTC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	268, 306, 337
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	9 cut(s)	16, 28, 55, 172, 179, 207, 245, 372, 408
SfaNI	GCATC	2 cut(s)	55, 204
SgrAI	CRCCGGYG	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	51
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	128
TaqI	TCGA	2 cut(s)	104, 152
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	3 cut(s)	64, 362, 418
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	3 cut(s)	64, 362, 418
Tth111I	GACNNNGTC	1 cut(s)	36
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.