Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0016147

Physical Location & Seq

Genomic Coordinates Forward (+)

4228384 .. 4237860

Gene Structure 9477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG053800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAGTTCACGAGCTCACGGTGGTTGTATCGAGCGAAAGCTAGACTGCGCCTACAGAATAAGCAGTGAAGATGAAGAGAAAGAAGACGAGACTGATACTCTGTTTTCCTCGAACACTCACACTTCCGATTCGTCCGGGTCTCGCCGGCGACTGCGTTCGAGTTCTCAGCGGAAATGTCAGAGCTTTGGCCGGAGAAGAGGGGGTTCTGAGGTGGGTCTGATGCCATTGCAAGGAAAAGTGAAGGACAGCTTTGCTGTGGTGAAGAAATCTAGTGATCCTTACAACGATTTCAGAACATCAATGGTGGAAATGATCGTGGAGAAGCAGATATTTTCAGGCAAAGATCTTGACCATCTCTTGCAGTGTTTTCTGAAGCTGAACTCGCCTCATCATCACAGAGTTATTATTGAGGTTTTCACTGAGATTTGGGAGGCTCTGTTCTCCAACTTGGGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

152

Amino Acids

17.29

Weight (kDa)

7.73

Isoelectric Point (pI)

67.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	90 - 147	2.6e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19650
fragaria_vesca	FvH4_1g04770
malus_domestica	MD15G1184600.v1.1
prunus_persica	Prupe.7G231400_v2.0.a1
pyrus_communis	pycom02g03890
rosa_chinensis	RchiOBHm_Chr2g0090371
rosa_laevigata	RLG00000016103
rosa_multiflora	Rmu_sc0004514.1_g000008
rosa_roxburghii	Rroxscaffold_2G00151220
rosa_rugosa	Rorug02G0006800
rosa_samantha	Rh2AG052900 Rh2BG051700 Rh2CG053800 Rh2DG052900
rosa_wichuraiana	Rw2G004400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	230, 450
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
AluBI	AGCT	5 cut(s)	14, 40, 183, 249, 376
AluI	AGCT	5 cut(s)	14, 40, 183, 249, 376
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	83, 144
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	16
BauI	CACGAG	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	16
BccI	CCATC	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	83, 144
BfaI	CTAG	2 cut(s)	41, 270
BfmI	CTRYAG	1 cut(s)	52
BglII	AGATCT	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 450
Bse118I	RCCGGY	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	230, 450
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	3 cut(s)	179, 198, 411
BshFI	GGCC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	3 cut(s)	135, 145, 190
BslI	CCNNNNNNNGG	2 cut(s)	230, 450
BsmAI	GTCTC	2 cut(s)	83, 144
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	3 cut(s)	274, 312, 343
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	3 cut(s)	178, 199, 412
BspPI	GGATC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	144
BssMI	GATC	3 cut(s)	274, 312, 343
BssSI	CACGAG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	69, 190
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	3 cut(s)	165, 207, 420
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	3 cut(s)	277, 315, 346
BstMAI	GTCTC	2 cut(s)	83, 144
BstMBI	GATC	3 cut(s)	274, 312, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	189
BtsI	GCAGTG	2 cut(s)	70, 368
BtsIMutI	CAGTG	3 cut(s)	70, 368, 417
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	144
CviJI	RGCY	7 cut(s)	14, 40, 183, 189, 249, 376, 434
CviKI_1	RGCY	7 cut(s)	14, 40, 183, 189, 249, 376, 434
DdeI	CTNAG	3 cut(s)	165, 207, 420
DpnI	GATC	3 cut(s)	276, 314, 345
DpnII	GATC	3 cut(s)	274, 312, 343
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	69, 190
EarI	CTCTTC	2 cut(s)	69, 190
Ecl136II	GAGCTC	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	16
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FriOI	GRGCYC	1 cut(s)	16
FspBI	CTAG	2 cut(s)	41, 270
GlaI	GCGC	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	3 cut(s)	135, 145, 190
HhaI	GCGC	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	3 cut(s)	135, 145, 190
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	6 cut(s)	127, 180, 208, 219, 293, 372
Hpy188III	TCNNGA	2 cut(s)	9, 347
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	229, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	3 cut(s)	165, 207, 420
HspAI	GCGC	1 cut(s)	48
KroI	GCCGGC	1 cut(s)	144
KroNI	GCCGGC	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	274, 312, 343
LpnPI	CCDG	4 cut(s)	148, 158, 203, 321
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	2 cut(s)	41, 270
MalI	GATC	3 cut(s)	276, 314, 345
MboI	GATC	3 cut(s)	274, 312, 343
MboII	GAAGA	5 cut(s)	80, 86, 95, 207, 274
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	16
MnlI	CCTC	6 cut(s)	118, 191, 202, 396, 403, 424
MreI	CGCCGGCG	1 cut(s)	144
MroNI	GCCGGC	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	3 cut(s)	135, 145, 190
MspR9I	CCNGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	382
NaeI	GCCGGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	3 cut(s)	274, 312, 343
NgoMIV	GCCGGC	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	343
SacI	GAGCTC	1 cut(s)	16
Sau3AI	GATC	3 cut(s)	274, 312, 343
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	7 cut(s)	16, 42, 185, 213, 251, 378, 414
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	52
SgrAI	CRCCGGYG	1 cut(s)	144
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	2 cut(s)	41, 270
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	20
TaqI	TCGA	3 cut(s)	30, 110, 158
TfiI	GAWTC	1 cut(s)	128
TscAI	CASTG	3 cut(s)	70, 368, 424
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	3 cut(s)	70, 368, 424
XspI	CTAG	2 cut(s)	41, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.