Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016147

Physical Location & Seq

Genomic Coordinates Forward (+)

14563347 .. 14564213

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1184600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAAAACCGATTCAAATTCAAGCTCTCAAACATGTTCCGATCCTCATTCGGCTCCTGCAGGACCCGAAACTTGTCTGACGTGATCGAAAAATCCGTCTTCTTGCCTGAAAACCAGCAAGACGTGCAAACCGCTCCGCCTCCTAAACAGCCGGCAGCTCTACCGTTTCCTTCCATTTGCAGACCCAAATGCTCCGACTCAAACCAACCCGTTATCTCTATCAAAGATGTAATGCTACCAAGACGCAAGATTTTTGAAAAGTACCCTCCTTTTGTGAAACCCTTTATTCCCGACGGCCACACATGCCCTCCAGCCTCGCCGATCTCGCAGCCGTTAAACCCCTTCTACAACCACCATGAAAAAAGCTCGAAACAGAGAAAAATCAGAGACAAGAAGAAGACGAAGGCGAGGAATTCAAAGAAGAACAAATCCAACGGCGATTTTTTCCCGTTCAGTACGTCTTCTTTCGATAGCAATACCTACAGAGGGTGGTGGTCGAGCAGTGACGATGAGACAGACACTCTGTTTTCTTCAAAGAGCCACTCCTCCGGACCCCGCTTGCGCCGCCGTTCCCGGCCAAACGGGAGCAGCAGCAGCCGCAGAAGAGAGAGCTCCGACGTGGGTCTGCTTCCGTTGCAAGGAAGAGTGAAGGACAGCTTTGCTGTGGTGAAGAAGTCGAGCGATCCGTACAACGACTTCAGGACGTCAATGGTGGAGATGATCTTCGAGAAGCAGATATTTTCGGCGAAGGATCTCGAACAGCTTCTGCAGTGTTTTCTGTCGTTGAATTCGACACACCATCACAGGGTGATTATTGAGGTTTTTACTGAAATTTGGGAAGCCTTGTTTTCCAACTGGGGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

289

Amino Acids

33.11

Weight (kDa)

9.87

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	226 - 283	1.7e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19650
fragaria_vesca	FvH4_1g04770
malus_domestica	MD15G1184600.v1.1
prunus_persica	Prupe.7G231400_v2.0.a1
pyrus_communis	pycom02g03890
rosa_chinensis	RchiOBHm_Chr2g0090371
rosa_laevigata	RLG00000016103
rosa_multiflora	Rmu_sc0004514.1_g000008
rosa_roxburghii	Rroxscaffold_2G00151220
rosa_rugosa	Rorug02G0006800
rosa_samantha	Rh2AG052900 Rh2BG051700 Rh2CG053800 Rh2DG052900
rosa_wichuraiana	Rw2G004400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	707
AccBSI	CCGCTC	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	548
AciI	CCGC	5 cut(s)	132, 137, 556, 565, 598
AclWI	GGATC	3 cut(s)	36, 677, 759
AcoI	YGGCCR	2 cut(s)	295, 575
AcsI	RAATTY	4 cut(s)	17, 412, 787, 831
AcuI	CTGAAG	1 cut(s)	682
AcyI	GRCGYC	1 cut(s)	704
AdeI	CACNNNGTG	1 cut(s)	808
AfaI	GTAC	3 cut(s)	263, 457, 689
AfiI	CCNNNNNNNGG	3 cut(s)	486, 638, 805
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	6 cut(s)	16, 22, 257, 417, 534, 787
AjiI	CACGTC	3 cut(s)	82, 124, 619
AluBI	AGCT	6 cut(s)	25, 158, 366, 612, 657, 763
AluI	AGCT	6 cut(s)	25, 158, 366, 612, 657, 763
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	2 cut(s)	381, 506
AlwI	GGATC	3 cut(s)	36, 677, 759
AlwNI	CAGNNNCTG	1 cut(s)	766
Aor13HI	TCCGGA	1 cut(s)	548
AoxI	GGCC	2 cut(s)	295, 575
ApeKI	GCWGC	5 cut(s)	155, 328, 588, 591, 594
ApoI	RAATTY	4 cut(s)	17, 412, 787, 831
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
Asp700I	GAANNNNTTC	1 cut(s)	762
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	63, 551
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	2 cut(s)	679, 820
AvaII	GGWCC	2 cut(s)	63, 551
BanII	GRGCYC	1 cut(s)	614
BarI	GAAGNNNNNNTAC	2 cut(s)	680, 712
BbsI	GAAGAC	3 cut(s)	91, 404, 453
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	5 cut(s)	167, 340, 600, 603, 606
BccI	CCATC	1 cut(s)	807
BceAI	ACGGC	4 cut(s)	310, 316, 451, 552
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	381, 506
BfmI	CTRYAG	3 cut(s)	58, 481, 767
BisI	GCNGC	7 cut(s)	156, 329, 565, 589, 592, 595, 598
BlsI	GCNGC	7 cut(s)	157, 330, 566, 590, 593, 596, 599
Bme1390I	CCNGG	1 cut(s)	574
Bme18I	GGWCC	2 cut(s)	63, 551
BmgBI	CACGTC	3 cut(s)	82, 124, 619
BmgT120I	GGNCC	2 cut(s)	63, 551
BmiI	GGNNCC	3 cut(s)	55, 65, 553
BmrFI	CCNGG	1 cut(s)	574
BmrI	ACTGGG	1 cut(s)	865
BmuI	ACTGGG	1 cut(s)	865
BoxI	GACNNNNGTC	1 cut(s)	621
BpiI	GAAGAC	3 cut(s)	91, 404, 453
BpmI	CTGGAG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	574
BsaHI	GRCGYC	1 cut(s)	704
BsaWI	WCCGGW	1 cut(s)	548
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	486, 638, 805
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	860
BseAI	TCCGGA	1 cut(s)	548
BseLI	CCNNNNNNNGG	3 cut(s)	486, 638, 805
BseNI	ACTGG	1 cut(s)	860
BseRI	GAGGAG	1 cut(s)	535
BseXI	GCAGC	5 cut(s)	167, 340, 600, 603, 606
BshFI	GGCC	2 cut(s)	297, 577
BsiHKAI	GWGCWC	1 cut(s)	614
BsiSI	CCGG	3 cut(s)	152, 549, 574
BslI	CCNNNNNNNGG	3 cut(s)	486, 638, 805
BsmAI	GTCTC	2 cut(s)	381, 506
BsnI	GGCC	2 cut(s)	297, 577
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp13I	TCCGGA	1 cut(s)	548
Bsp143I	GATC	7 cut(s)	41, 84, 321, 682, 720, 751, 860
BspACI	CCGC	5 cut(s)	132, 137, 556, 565, 598
BspANI	GGCC	2 cut(s)	297, 577
BspEI	TCCGGA	1 cut(s)	548
BspLI	GGNNCC	3 cut(s)	55, 65, 553
BspMAI	CTGCAG	2 cut(s)	62, 771
BspPI	GGATC	3 cut(s)	36, 677, 759
BsrBI	CCGCTC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	860
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	7 cut(s)	41, 84, 321, 682, 720, 751, 860
BssNI	GRCGYC	1 cut(s)	704
Bst4CI	ACNGT	1 cut(s)	165
Bst6I	CTCTTC	2 cut(s)	598, 637
BstACI	GRCGYC	1 cut(s)	704
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	153, 560
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	7 cut(s)	44, 87, 324, 685, 723, 754, 863
BstMAI	GTCTC	2 cut(s)	381, 506
BstMBI	GATC	7 cut(s)	41, 84, 321, 682, 720, 751, 860
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 303, 325, 564, 594, 597, 634
BstNSI	RCATGY	2 cut(s)	37, 306
BstPAI	GACNNNNGTC	1 cut(s)	621
BstSCI	CCNGG	1 cut(s)	572
BstSFI	CTRYAG	3 cut(s)	58, 481, 767
BstV1I	GCAGC	5 cut(s)	167, 340, 600, 603, 606
BstV2I	GAAGAC	3 cut(s)	91, 404, 453
BstX2I	RGATCY	2 cut(s)	751, 860
BstYI	RGATCY	2 cut(s)	751, 860
BsuRI	GGCC	2 cut(s)	297, 577
BtrI	CACGTC	3 cut(s)	82, 124, 619
BtsI	GCAGTG	2 cut(s)	508, 776
BtsIMutI	CAGTG	2 cut(s)	508, 776
Cac8I	GCNNGC	2 cut(s)	153, 560
CaiI	CAGNNNCTG	1 cut(s)	766
CfoI	GCGC	1 cut(s)	564
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	63, 551
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	3 cut(s)	262, 456, 688
CviAII	CATG	3 cut(s)	34, 303, 356
CviQI	GTAC	3 cut(s)	262, 456, 688
DpnI	GATC	7 cut(s)	43, 86, 323, 684, 722, 753, 862
DpnII	GATC	7 cut(s)	41, 84, 321, 682, 720, 751, 860
DraIII	CACNNNGTG	1 cut(s)	808
EaeI	YGGCCR	2 cut(s)	295, 575
Eam1104I	CTCTTC	2 cut(s)	598, 637
EarI	CTCTTC	2 cut(s)	598, 637
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	612
Eco24I	GRGCYC	1 cut(s)	614
Eco47I	GGWCC	2 cut(s)	63, 551
Eco53kI	GAGCTC	1 cut(s)	612
Eco57I	CTGAAG	1 cut(s)	682
EcoICRI	GAGCTC	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRI	GAATTC	2 cut(s)	412, 787
EcoT38I	GRGCYC	1 cut(s)	614
FaeI	CATG	3 cut(s)	37, 306, 359
FaiI	YATR	3 cut(s)	35, 304, 357
FalI	AAGNNNNNCTT	2 cut(s)	641, 673
FatI	CATG	3 cut(s)	33, 302, 355
FauI	CCCGC	1 cut(s)	563
Fnu4HI	GCNGC	7 cut(s)	156, 329, 565, 589, 592, 595, 598
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	7 cut(s)	156, 329, 565, 589, 592, 595, 598
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	7 cut(s)	156, 329, 565, 589, 592, 595, 598
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	297, 577
HapII	CCGG	3 cut(s)	152, 549, 574
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	1 cut(s)	564
Hin1I	GRCGYC	1 cut(s)	704
Hin1II	CATG	3 cut(s)	37, 306, 359
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HinfI	GANTC	2 cut(s)	12, 197
HpaII	CCGG	3 cut(s)	152, 549, 574
HphI	GGTGA	2 cut(s)	679, 820
Hpy188I	TCNGA	5 cut(s)	41, 79, 196, 386, 616
Hpy188III	TCNNGA	6 cut(s)	290, 549, 700, 727, 755, 864
Hpy99I	CGWCG	2 cut(s)	296, 620
HpyAV	CCTTC	5 cut(s)	180, 352, 397, 643, 742
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4IV	ACGT	5 cut(s)	81, 123, 458, 618, 704
HpyCH4V	TGCA	5 cut(s)	60, 127, 180, 637, 769
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 303, 325, 564, 594, 597, 634
HpySE526I	ACGT	5 cut(s)	81, 123, 458, 618, 704
Hsp92I	GRCGYC	1 cut(s)	704
Hsp92II	CATG	3 cut(s)	37, 306, 359
HspAI	GCGC	1 cut(s)	562
Kpn2I	TCCGGA	1 cut(s)	548
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Kzo9I	GATC	7 cut(s)	41, 84, 321, 682, 720, 751, 860
LmnI	GCTCC	5 cut(s)	59, 139, 197, 585, 617
Lsp1109I	GCAGC	5 cut(s)	167, 340, 600, 603, 606
MaeII	ACGT	5 cut(s)	81, 123, 458, 618, 704
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	7 cut(s)	43, 86, 323, 684, 722, 753, 862
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	7 cut(s)	41, 84, 321, 682, 720, 751, 860
MflI	RGATCY	2 cut(s)	751, 860
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	4 cut(s)	17, 412, 787, 831
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	3 cut(s)	219, 456, 639
MnlI	CCTC	9 cut(s)	55, 150, 276, 318, 325, 402, 479, 556, 811
MroI	TCCGGA	1 cut(s)	548
MroNI	GCCGGC	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	762
MseI	TTAA	1 cut(s)	335
MspI	CCGG	3 cut(s)	152, 549, 574
MspR9I	CCNGG	1 cut(s)	574
MwoI	GCNNNNNNNGC	7 cut(s)	124, 303, 325, 564, 594, 597, 634
NaeI	GCCGGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	574
NdeII	GATC	7 cut(s)	41, 84, 321, 682, 720, 751, 860
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	37, 306, 359
NlaIV	GGNNCC	3 cut(s)	55, 65, 553
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	2 cut(s)	37, 306
PciI	ACATGT	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 683, 788
PdiI	GCCGGC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	7 cut(s)	157, 330, 566, 590, 593, 596, 599
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PpuMI	RGGWCCY	1 cut(s)	63
PscI	ACATGT	1 cut(s)	33
PshAI	GACNNNNGTC	1 cut(s)	621
Psp124BI	GAGCTC	1 cut(s)	614
Psp5II	RGGWCCY	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	55, 65, 553
PspPI	GGNCC	2 cut(s)	63, 551
PspPPI	RGGWCCY	1 cut(s)	63
PstI	CTGCAG	2 cut(s)	62, 771
PstNI	CAGNNNCTG	1 cut(s)	766
PsuI	RGATCY	2 cut(s)	751, 860
RsaI	GTAC	3 cut(s)	263, 457, 689
RsaNI	GTAC	3 cut(s)	262, 456, 688
SacI	GAGCTC	1 cut(s)	614
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	7 cut(s)	156, 329, 565, 589, 592, 595, 598
Sau3AI	GATC	7 cut(s)	41, 84, 321, 682, 720, 751, 860
Sau96I	GGNCC	2 cut(s)	63, 551
SbfI	CCTGCAGG	1 cut(s)	62
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	574
SdaI	CCTGCAGG	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	614
SfcI	CTRYAG	3 cut(s)	58, 481, 767
SinI	GGWCC	2 cut(s)	63, 551
Sse8387I	CCTGCAGG	1 cut(s)	62
Sse9I	AATT	4 cut(s)	17, 412, 787, 831
SsiI	CCGC	5 cut(s)	132, 137, 556, 565, 598
SstI	GAGCTC	1 cut(s)	614
StyD4I	CCNGG	1 cut(s)	572
TaaI	ACNGT	1 cut(s)	165
TaiI	ACGT	5 cut(s)	84, 126, 461, 621, 707
TaqI	TCGA	8 cut(s)	87, 368, 468, 497, 677, 726, 756, 791
TasI	AATT	4 cut(s)	17, 412, 787, 831
TauI	GCSGC	2 cut(s)	567, 600
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	2 cut(s)	508, 776
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	5 cut(s)	155, 328, 588, 591, 594
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	372
TspGWI	ACGGA	3 cut(s)	85, 621, 675
TspRI	CASTG	2 cut(s)	508, 776
VpaK11BI	GGWCC	2 cut(s)	63, 551
XapI	RAATTY	4 cut(s)	17, 412, 787, 831
XceI	RCATGY	2 cut(s)	37, 306
XmnI	GAANNNNTTC	1 cut(s)	762
ZraI	GACGTC	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.