pycom02g03890

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0016147
Physical Location & Seq
Forward (+)
2577101 .. 2578169
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g03890.1

Sequence Viewer

Length: 942 bp
ATGCAAAACCGATTCAAGCTCAAGCTCTCAAACATGTTCCGATCCTCATTCGGCTCCTGCAGGACCCGAAACTTATCGGACGTGATCGAAAAAGCCGTGTGCTTGCCTGAGAACCAGCAAGACTTGCATGTTGCCGAGCCGCCGCCTAAGCAGTTGCCTCCTCGACAGTTTCCTTCCATTTGCAGACCCAAATGCTCCGACTCAAATCAATCCATTATCTCTACCAAAGACGCCATGCTCCCAAGACGCAAGATTTTCGAAAAGTACTCTCCTTTTGTAGAACCCTTTAATCCCGACGGCCACACATGCCCTCCAGCCTCGCCAAACTTGCCGCCGTTAAACCCCTTCTACAACCTCCATGAGAAAAACTCGAAACAAAGAAAAACAAGAGTCAAGAAAAAGAAGAAGAAGACGAGGAATTCAAAGAAGAACAAAACCAACGATGATTTTTTCCCGTTTAGTTCTTCATCTTTCGATAGTAACAACTACAGAGGATGGTGGTCGAGCAGCGATGACGAGACTGACACACTGTTTTCTTCAAAGAGCCACTCTTCCGACTCCTCCGGGCCCCGCTTGCGCGGTCGCTCACGGCGAAACGGGAGCAGCGGCAGCCGGAGAAGAGCGAGTTCCGACGTGGGTCTGCTTCCGTTGCAAGGAAGAGTGAAGGACTGCTTTGCGGTGGTGAAGAAGTCGAGCGATCCGTACAACGACTTCAGGACATCAATGGTGGAGATGATCTTCGAGAAGCAGATATTTTCGGCGAAGGATCTCGAACAGCTCCTGCAGTTGGATTTATTAATAGTTAGAATCGAACTTTGGGTAACTACATTGACGGGTTTAGTGGCACTTTTCTTTCGAACGCTGAAAGATATCTCAAGTTCGAATCTCACTATTCAGTCTATTCCTAAAGAGAACTACATTGATGGGTTATTATCTCTTTAG

Protein Analysis

314

Amino Acids

35.74

Weight (kDa)

9.84

Isoelectric Point (pI)

58.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 231 - 262 4.5e-11 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19650
fragaria_vesca FvH4_1g04770
malus_domestica MD15G1184600.v1.1
prunus_persica Prupe.7G231400_v2.0.a1
pyrus_communis pycom02g03890
rosa_chinensis RchiOBHm_Chr2g0090371
rosa_laevigata RLG00000016103
rosa_multiflora Rmu_sc0004514.1_g000008
rosa_roxburghii Rroxscaffold_2G00151220
rosa_rugosa Rorug02G0006800
rosa_samantha Rh2AG052900 Rh2BG051700 Rh2CG053800 Rh2DG052900
rosa_wichuraiana Rw2G004400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 579
AciI CCGC 7 cut(s) 140, 143, 332, 571, 579, 606, 677
AclWI GGATC 3 cut(s) 36, 692, 774
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 697
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 2 cut(s) 266, 704
AfiI CCNNNNNNNGG 2 cut(s) 653, 787
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 3 cut(s) 16, 423, 540
AjiI CACGTC 2 cut(s) 82, 634
AjuI GAANNNNNNNTTGG 2 cut(s) 799, 831
AluBI AGCT 3 cut(s) 19, 25, 778
AluI AGCT 3 cut(s) 19, 25, 778
Alw26I GTCTC 1 cut(s) 512
AlwI GGATC 3 cut(s) 36, 692, 774
AlwNI CAGNNNCTG 1 cut(s) 781
AoxI GGCC 2 cut(s) 298, 566
ApaI GGGCCC 1 cut(s) 570
ApeKI GCWGC 3 cut(s) 507, 603, 609
ApoI RAATTY 1 cut(s) 418
AseI ATTAAT 1 cut(s) 797
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 3 cut(s) 63, 566, 567
AsuC2I CCSGG 1 cut(s) 565
AsuHPI GGTGA 1 cut(s) 694
AsuII TTCGAA 3 cut(s) 258, 856, 881
AvaII GGWCC 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 570
BanII GRGCYC 1 cut(s) 570
BarI GAAGNNNNNNTAC 2 cut(s) 695, 727
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 3 cut(s) 519, 615, 621
BccI CCATC 2 cut(s) 489, 917
BceAI ACGGC 4 cut(s) 80, 313, 319, 605
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 1 cut(s) 512
BfmI CTRYAG 3 cut(s) 58, 487, 782
BisI GCNGC 7 cut(s) 140, 143, 332, 508, 604, 607, 610
BlsI GCNGC 7 cut(s) 141, 144, 333, 509, 605, 608, 611
BmcAI AGTACT 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 565
Bme18I GGWCC 1 cut(s) 63
BmgBI CACGTC 2 cut(s) 82, 634
BmgT120I GGNCC 3 cut(s) 63, 566, 567
BmiI GGNNCC 4 cut(s) 55, 65, 568, 569
BmrFI CCNGG 1 cut(s) 565
BoxI GACNNNNGTC 1 cut(s) 636
BpiI GAAGAC 1 cut(s) 416
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpmI CTGGAG 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 147
Bpu14I TTCGAA 3 cut(s) 258, 856, 881
BpuEI CTTGAG 2 cut(s) 5, 859
BpuMI CCSGG 1 cut(s) 565
BsaHI GRCGYC 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 653, 787
BseGI GGATG 1 cut(s) 500
BseLI CCNNNNNNNGG 2 cut(s) 653, 787
BseMII CTCAG 1 cut(s) 99
BseRI GAGGAG 2 cut(s) 150, 550
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 3 cut(s) 519, 615, 621
Bsh1236I CGCG 1 cut(s) 579
Bsh1285I CGRYCG 1 cut(s) 583
BshFI GGCC 2 cut(s) 300, 568
BsiEI CGRYCG 1 cut(s) 583
BsiSI CCGG 2 cut(s) 564, 613
BslI CCNNNNNNNGG 2 cut(s) 653, 787
BsmAI GTCTC 1 cut(s) 512
BsnI GGCC 2 cut(s) 300, 568
Bsp119I TTCGAA 3 cut(s) 258, 856, 881
Bsp120I GGGCCC 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 5 cut(s) 41, 84, 697, 735, 766
BspACI CCGC 7 cut(s) 140, 143, 332, 571, 579, 606, 677
BspANI GGCC 2 cut(s) 300, 568
BspCNI CTCAG 1 cut(s) 100
BspFNI CGCG 1 cut(s) 579
BspLI GGNNCC 4 cut(s) 55, 65, 568, 569
BspMAI CTGCAG 2 cut(s) 62, 786
BspPI GGATC 3 cut(s) 36, 692, 774
BspQI GCTCTTC 1 cut(s) 613
BspT104I TTCGAA 3 cut(s) 258, 856, 881
BssMI GATC 5 cut(s) 41, 84, 697, 735, 766
BssNI GRCGYC 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 168, 531
Bst6I CTCTTC 3 cut(s) 556, 613, 652
BstACI GRCGYC 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 124
BstBI TTCGAA 3 cut(s) 258, 856, 881
BstC8I GCNNGC 2 cut(s) 104, 575
BstDEI CTNAG 2 cut(s) 108, 147
BstF5I GGATG 1 cut(s) 500
BstFNI CGCG 1 cut(s) 579
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 5 cut(s) 44, 87, 700, 738, 769
BstMAI GTCTC 1 cut(s) 512
BstMBI GATC 5 cut(s) 41, 84, 697, 735, 766
BstMCI CGRYCG 1 cut(s) 583
BstMWI GCNNNNNNNGC 7 cut(s) 124, 148, 306, 328, 574, 609, 649
BstNSI RCATGY 3 cut(s) 37, 131, 309
BstPAI GACNNNNGTC 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 563
BstSFI CTRYAG 3 cut(s) 58, 487, 782
BstSLI GKGCMC 1 cut(s) 570
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 3 cut(s) 519, 615, 621
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
BsuRI GGCC 2 cut(s) 300, 568
BtgZI GCGATG 1 cut(s) 525
BtrI CACGTC 2 cut(s) 82, 634
BtsCI GGATG 1 cut(s) 500
BtsIMutI CAGTG 1 cut(s) 527
Cac8I GCNNGC 2 cut(s) 104, 575
CaiI CAGNNNCTG 1 cut(s) 781
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 3 cut(s) 63, 566, 567
CseI GACGC 2 cut(s) 239, 255
Csp6I GTAC 2 cut(s) 265, 703
CviAII CATG 5 cut(s) 34, 128, 235, 306, 359
CviQI GTAC 2 cut(s) 265, 703
DdeI CTNAG 2 cut(s) 108, 147
DpnI GATC 5 cut(s) 43, 86, 699, 737, 768
DpnII GATC 5 cut(s) 41, 84, 697, 735, 766
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 3 cut(s) 556, 613, 652
EarI CTCTTC 3 cut(s) 556, 613, 652
Eco24I GRGCYC 1 cut(s) 570
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 697
EcoO109I RGGNCCY 2 cut(s) 63, 567
EcoRI GAATTC 1 cut(s) 418
EcoRV GATATC 1 cut(s) 871
EcoT38I GRGCYC 1 cut(s) 570
FaeI CATG 5 cut(s) 37, 131, 238, 309, 362
FaiI YATR 5 cut(s) 35, 129, 236, 307, 360
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FatI CATG 5 cut(s) 33, 127, 234, 305, 358
FauI CCCGC 1 cut(s) 578
Fnu4HI GCNGC 7 cut(s) 140, 143, 332, 508, 604, 607, 610
FokI GGATG 1 cut(s) 507
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 7 cut(s) 140, 143, 332, 508, 604, 607, 610
GlaI GCGC 1 cut(s) 578
GluI GCNGC 7 cut(s) 140, 143, 332, 508, 604, 607, 610
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 2 cut(s) 300, 568
HapII CCGG 2 cut(s) 564, 613
HgaI GACGC 2 cut(s) 239, 255
HhaI GCGC 1 cut(s) 579
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 5 cut(s) 37, 131, 238, 309, 362
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HinfI GANTC 6 cut(s) 12, 200, 390, 557, 807, 883
HpaII CCGG 2 cut(s) 564, 613
HphI GGTGA 1 cut(s) 694
Hpy188I TCNGA 5 cut(s) 41, 79, 199, 556, 631
Hpy188III TCNNGA 5 cut(s) 293, 394, 715, 742, 770
Hpy99I CGWCG 2 cut(s) 299, 635
HpyAV CCTTC 4 cut(s) 183, 355, 658, 757
HpyCH4III ACNGT 2 cut(s) 168, 531
HpyCH4IV ACGT 2 cut(s) 81, 633
HpyCH4V TGCA 6 cut(s) 4, 60, 127, 183, 652, 784
HpyF10VI GCNNNNNNNGC 7 cut(s) 124, 148, 306, 328, 574, 609, 649
HpyF3I CTNAG 2 cut(s) 108, 147
HpySE526I ACGT 2 cut(s) 81, 633
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 5 cut(s) 37, 131, 238, 309, 362
HspAI GCGC 1 cut(s) 577
Kzo9I GATC 5 cut(s) 41, 84, 697, 735, 766
LguI GCTCTTC 1 cut(s) 613
LmnI GCTCC 5 cut(s) 59, 200, 243, 600, 783
LpnPI CCDG 9 cut(s) 46, 70, 120, 128, 327, 577, 626, 700, 794
Lsp1109I GCAGC 3 cut(s) 519, 615, 621
MaeII ACGT 2 cut(s) 81, 633
MaeIII GTNAC 2 cut(s) 479, 820
MalI GATC 5 cut(s) 43, 86, 699, 737, 768
MboI GATC 5 cut(s) 41, 84, 697, 735, 766
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 1 cut(s) 418
MlyI GAGTC 3 cut(s) 194, 399, 551
MmeI TCCRAC 4 cut(s) 222, 579, 654, 768
MnlI CCTC 9 cut(s) 55, 168, 171, 321, 328, 365, 408, 485, 571
MseI TTAA 3 cut(s) 288, 338, 797
MspA1I CMGCKG 1 cut(s) 606
MspI CCGG 2 cut(s) 564, 613
MspR9I CCNGG 1 cut(s) 565
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 7 cut(s) 124, 148, 306, 328, 574, 609, 649
NciI CCSGG 1 cut(s) 565
NdeII GATC 5 cut(s) 41, 84, 697, 735, 766
NlaIII CATG 5 cut(s) 37, 131, 238, 309, 362
NlaIV GGNNCC 4 cut(s) 55, 65, 568, 569
NmeAIII GCCGAG 1 cut(s) 160
NspI RCATGY 3 cut(s) 37, 131, 309
NspV TTCGAA 3 cut(s) 258, 856, 881
PciI ACATGT 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 613
PcsI WCGNNNNNNNCGW 3 cut(s) 93, 589, 698
PfeI GAWTC 3 cut(s) 12, 807, 883
PkrI GCNGC 7 cut(s) 141, 144, 333, 509, 605, 608, 611
PleI GAGTC 3 cut(s) 194, 398, 551
PpsI GAGTC 3 cut(s) 194, 398, 551
PpuMI RGGWCCY 1 cut(s) 63
PscI ACATGT 1 cut(s) 33
PshAI GACNNNNGTC 1 cut(s) 636
PshBI ATTAAT 1 cut(s) 797
Psp5II RGGWCCY 1 cut(s) 63
PspN4I GGNNCC 4 cut(s) 55, 65, 568, 569
PspOMI GGGCCC 1 cut(s) 566
PspPI GGNCC 3 cut(s) 63, 566, 567
PspPPI RGGWCCY 1 cut(s) 63
PstI CTGCAG 2 cut(s) 62, 786
PstNI CAGNNNCTG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 766
RsaI GTAC 2 cut(s) 266, 704
RsaNI GTAC 2 cut(s) 265, 703
SapI GCTCTTC 1 cut(s) 613
SaqAI TTAA 3 cut(s) 288, 338, 797
SatI GCNGC 7 cut(s) 140, 143, 332, 508, 604, 607, 610
Sau3AI GATC 5 cut(s) 41, 84, 697, 735, 766
Sau96I GGNCC 3 cut(s) 63, 566, 567
SbfI CCTGCAGG 1 cut(s) 62
ScaI AGTACT 1 cut(s) 266
SchI GAGTC 3 cut(s) 194, 399, 551
ScrFI CCNGG 1 cut(s) 565
SdaI CCTGCAGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 570
SetI ASST 6 cut(s) 21, 27, 84, 357, 636, 780
SfcI CTRYAG 3 cut(s) 58, 487, 782
SfuI TTCGAA 3 cut(s) 258, 856, 881
SinI GGWCC 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 20, 874
SmoI CTYRAG 2 cut(s) 20, 874
Sse8387I CCTGCAGG 1 cut(s) 62
Sse9I AATT 1 cut(s) 418
SsiI CCGC 7 cut(s) 140, 143, 332, 571, 579, 606, 677
StyD4I CCNGG 1 cut(s) 563
TaaI ACNGT 2 cut(s) 168, 531
TaiI ACGT 2 cut(s) 84, 636
TasI AATT 1 cut(s) 418
TatI WGTACW 1 cut(s) 264
TauI GCSGC 4 cut(s) 142, 145, 334, 609
TfiI GAWTC 3 cut(s) 12, 807, 883
Tru1I TTAA 3 cut(s) 288, 338, 797
Tru9I TTAA 3 cut(s) 288, 338, 797
TscAI CASTG 1 cut(s) 534
TseI GCWGC 3 cut(s) 507, 603, 609
TspDTI ATGAA 1 cut(s) 456
TspGWI ACGGA 2 cut(s) 636, 690
TspRI CASTG 1 cut(s) 534
VpaK11BI GGWCC 1 cut(s) 63
VspI ATTAAT 1 cut(s) 797
XapI RAATTY 1 cut(s) 418
XceI RCATGY 3 cut(s) 37, 131, 309
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.