FvH4_1g04770

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016147
Physical Location & Seq
Forward (+)
2520211 .. 2521538
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04770.t1

Sequence Viewer

Length: 1011 bp
ATGCATTTATACACACCCCCAACCCTTCTCTTTCCTCCAAAACCCTCCTCCTCTGTTCTCATTCTCTCTCTAAAGCTCCTCTGTTTCTCCAACCTCTGTACTTTTCTCTCTAAAATGGAAAACCGCTTCAAGCTGAAGCTCTCGCGCATGTTCCACAAGGCCTCACTCGGCACCTGCCGCTCACGTAGCCTCTCCGACGTGATCGAAAAAGCTGTGTTTTTGCCTCAGAATTGTAACACTAGTACCGACTCTCCTCCAAAACCAGCTCCTCCTCCTCCTAAGCCTTTTCCGGCAATTTGCCGGCCTAAATGCTCCGACGACCCGAAGCAACAACCCATCAACCACCGCTGCGTCATTTCCAGATCCAACACTGACCTCATGCTCCCCAGACGCAAGATTTTCGAACGTCGCTCCCCGTTTGTGAAGTCTGAAATTCCTCCAAATCCTCTGTTCTCGAACTCAAATCCGTTCTACGAAGTCCATGAAAGTCACAGCTTTCGACAGAGGAAGAAGAGAGGGAGCAAGAAAAAGAAGAAGAGGAGTCAGAAGAGTGATATTTCTTCTTTGGATAGTAATCACTACTACCACAATGGGTGGTGGTCCAGCAGTGAAGATGAAGAGAAAGAAGACGAGACTGATACTCTGTTTTCCTCCAACACTCACACTTCCGATTCGTCAGGCTCTCGCAGGCGACTGCGTTCGAGTTCTCGGGGAAAAGCTCAGAGCTTTGGCCGGAGAAGAGGAAGCTCTGTCTGCTCTGAGGTGGGTCTGATGCCATTGCAAGGAAAAGTGAAGGACAGCTTCGCTGTGGTGAAGAAATCTAGTGATCCTTACAACGATTTCAGAACATCAATGGTGGAAATGATCGTGGAGAAGCAGATATTTTCAGGCAAAGATCTTGAGCATCTTTTGCAGTGTTTTCTGAAGCTGAACTCGCCTCATCATCACAGAGTTATTATTGAGGTGTTCACTGAGATTTGGGAGGCTCTATTCTCCAACTTGGGGACTTGA

Protein Analysis

337

Amino Acids

38.45

Weight (kDa)

9.78

Isoelectric Point (pI)

73.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 274 - 331 2.5e-26 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19650
fragaria_vesca FvH4_1g04770
malus_domestica MD15G1184600.v1.1
prunus_persica Prupe.7G231400_v2.0.a1
pyrus_communis pycom02g03890
rosa_chinensis RchiOBHm_Chr2g0090371
rosa_laevigata RLG00000016103
rosa_multiflora Rmu_sc0004514.1_g000008
rosa_roxburghii Rroxscaffold_2G00151220
rosa_rugosa Rorug02G0006800
rosa_samantha Rh2AG052900 Rh2BG051700 Rh2CG053800 Rh2DG052900
rosa_wichuraiana Rw2G004400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 170
AccBSI CCGCTC 1 cut(s) 180
AccII CGCG 1 cut(s) 145
AciI CCGC 3 cut(s) 124, 178, 346
AclWI GGATC 2 cut(s) 357, 821
AcoI YGGCCR 1 cut(s) 730
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 2 cut(s) 155, 944
AfaI GTAC 2 cut(s) 100, 244
AfiI CCNNNNNNNGG 2 cut(s) 782, 1002
AgsI TTSAA 1 cut(s) 130
AhlI ACTAGT 1 cut(s) 239
AjiI CACGTC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 626
AlwI GGATC 2 cut(s) 357, 821
Ama87I CYCGRG 1 cut(s) 708
AoxI GGCC 3 cut(s) 159, 302, 730
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 1 cut(s) 432
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 600
AsuHPI GGTGA 1 cut(s) 823
AsuII TTCGAA 1 cut(s) 402
AvaI CYCGRG 1 cut(s) 708
AvaII GGWCC 1 cut(s) 600
BaeI ACNNNNGTAYC 2 cut(s) 226, 259
BanI GGYRCC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 633
BbvI GCAGC 1 cut(s) 335
BccI CCATC 1 cut(s) 344
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BcoDI GTCTC 1 cut(s) 626
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 2 cut(s) 240, 822
BfuAI ACCTGC 1 cut(s) 182
BglII AGATCT 1 cut(s) 895
BisI GCNGC 2 cut(s) 178, 349
BlsI GCNGC 2 cut(s) 179, 350
Bme18I GGWCC 1 cut(s) 600
BmeT110I CYCGRG 1 cut(s) 708
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 600
BmiI GGNNCC 1 cut(s) 172
BmsI GCATC 2 cut(s) 762, 913
BpiI GAAGAC 1 cut(s) 633
Bpu10I CCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 920
BsaAI YACGTR 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 573
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 782, 1002
Bse118I RCCGGY 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 776
Bse8I GATNNNNATC 1 cut(s) 573
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 2 cut(s) 782, 1002
BseMI GCAATG 1 cut(s) 776
BseMII CTCAG 4 cut(s) 239, 734, 750, 963
BseRI GAGGAG 8 cut(s) 37, 40, 68, 243, 258, 261, 264, 553
BseXI GCAGC 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 3 cut(s) 161, 304, 732
BshNI GGYRCC 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 708
BsiSI CCGG 3 cut(s) 290, 301, 733
BslI CCNNNNNNNGG 2 cut(s) 782, 1002
BsmAI GTCTC 1 cut(s) 626
BsnI GGCC 3 cut(s) 161, 304, 732
BsoBI CYCGRG 1 cut(s) 708
Bsp119I TTCGAA 1 cut(s) 402
Bsp143I GATC 5 cut(s) 201, 362, 826, 864, 895
BspACI CCGC 3 cut(s) 124, 178, 346
BspANI GGCC 3 cut(s) 161, 304, 732
BspCNI CTCAG 4 cut(s) 238, 733, 751, 964
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 2 cut(s) 357, 821
BspT104I TTCGAA 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 300
BssAI RCCGGY 1 cut(s) 300
BssMI GATC 5 cut(s) 201, 362, 826, 864, 895
Bst6I CTCTTC 5 cut(s) 506, 530, 542, 612, 733
BstAPI GCANNNNNTGC 1 cut(s) 910
BstBAI YACGTR 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 2 cut(s) 302, 689
BstDEI CTNAG 5 cut(s) 225, 279, 720, 759, 972
BstFNI CGCG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 5 cut(s) 204, 365, 829, 867, 898
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 5 cut(s) 201, 362, 826, 864, 895
BstMWI GCNNNNNNNGC 5 cut(s) 177, 186, 753, 910, 934
BstNSI RCATGY 1 cut(s) 151
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 633
BstX2I RGATCY 2 cut(s) 362, 895
BstYI RGATCY 2 cut(s) 362, 895
BsuRI GGCC 3 cut(s) 161, 304, 732
BtrI CACGTC 1 cut(s) 199
BtsI GCAGTG 2 cut(s) 613, 920
BtsIMutI CAGTG 4 cut(s) 369, 613, 920, 969
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 302, 689
CfoI GCGC 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 600
CseI GACGC 2 cut(s) 340, 399
Csp6I GTAC 2 cut(s) 99, 243
CviAII CATG 3 cut(s) 148, 379, 482
CviQI GTAC 2 cut(s) 99, 243
DdeI CTNAG 5 cut(s) 225, 279, 720, 759, 972
DpnI GATC 5 cut(s) 203, 364, 828, 866, 897
DpnII GATC 5 cut(s) 201, 362, 826, 864, 895
EaeI YGGCCR 1 cut(s) 730
Eam1104I CTCTTC 5 cut(s) 506, 530, 542, 612, 733
EarI CTCTTC 5 cut(s) 506, 530, 542, 612, 733
Eco147I AGGCCT 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 600
Eco57I CTGAAG 2 cut(s) 155, 944
Eco88I CYCGRG 1 cut(s) 708
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 151, 382, 485
FaiI YATR 4 cut(s) 10, 149, 380, 483
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FatI CATG 3 cut(s) 147, 378, 481
Fnu4HI GCNGC 2 cut(s) 178, 349
Fsp4HI GCNGC 2 cut(s) 178, 349
FspBI CTAG 2 cut(s) 240, 822
GlaI GCGC 1 cut(s) 146
GluI GCNGC 2 cut(s) 178, 349
HaeIII GGCC 3 cut(s) 161, 304, 732
HapII CCGG 3 cut(s) 290, 301, 733
HgaI GACGC 2 cut(s) 340, 399
HhaI GCGC 1 cut(s) 147
Hin1II CATG 3 cut(s) 151, 382, 485
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HinfI GANTC 3 cut(s) 248, 541, 671
HpaII CCGG 3 cut(s) 290, 301, 733
HphI GGTGA 1 cut(s) 823
Hpy166II GTNNAC 1 cut(s) 969
Hpy188III TCNNGA 3 cut(s) 360, 454, 899
Hpy8I GTNNAC 1 cut(s) 969
Hpy99I CGWCG 3 cut(s) 200, 320, 411
HpyAV CCTTC 2 cut(s) 35, 787
HpyCH4IV ACGT 3 cut(s) 184, 198, 406
HpyCH4V TGCA 3 cut(s) 4, 781, 913
HpyF10VI GCNNNNNNNGC 5 cut(s) 177, 186, 753, 910, 934
HpyF3I CTNAG 5 cut(s) 225, 279, 720, 759, 972
HpySE526I ACGT 3 cut(s) 184, 198, 406
Hsp92II CATG 3 cut(s) 151, 382, 485
HspAI GCGC 1 cut(s) 145
KroI GCCGGC 1 cut(s) 300
KroNI GCCGGC 1 cut(s) 302
Kzo9I GATC 5 cut(s) 201, 362, 826, 864, 895
LmnI GCTCC 6 cut(s) 81, 271, 317, 387, 416, 519
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 2 cut(s) 762, 913
MaeI CTAG 2 cut(s) 240, 822
MaeII ACGT 3 cut(s) 184, 198, 406
MaeIII GTNAC 2 cut(s) 233, 488
MalI GATC 5 cut(s) 203, 364, 828, 866, 897
MbiI CCGCTC 1 cut(s) 180
MboI GATC 5 cut(s) 201, 362, 826, 864, 895
MflI RGATCY 2 cut(s) 362, 895
MluCI AATT 3 cut(s) 229, 294, 432
MlyI GAGTC 2 cut(s) 242, 550
MmeI TCCRAC 5 cut(s) 114, 219, 339, 390, 678
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 348
MspI CCGG 3 cut(s) 290, 301, 733
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 5 cut(s) 177, 186, 753, 910, 934
NaeI GCCGGC 1 cut(s) 302
NdeII GATC 5 cut(s) 201, 362, 826, 864, 895
NgoMIV GCCGGC 1 cut(s) 300
NlaIII CATG 3 cut(s) 151, 382, 485
NlaIV GGNNCC 1 cut(s) 172
NmeAIII GCCGAG 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 488
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 151
NspV TTCGAA 1 cut(s) 402
PaqCI CACCTGC 1 cut(s) 182
PceI AGGCCT 1 cut(s) 161
PdiI GCCGGC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 671
PkrI GCNGC 2 cut(s) 179, 350
PleI GAGTC 2 cut(s) 242, 549
PpsI GAGTC 2 cut(s) 242, 549
Ppu21I YACGTR 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 600
PsuI RGATCY 2 cut(s) 362, 895
RsaI GTAC 2 cut(s) 100, 244
RsaNI GTAC 2 cut(s) 99, 243
SatI GCNGC 2 cut(s) 178, 349
Sau3AI GATC 5 cut(s) 201, 362, 826, 864, 895
Sau96I GGNCC 1 cut(s) 600
SchI GAGTC 2 cut(s) 242, 550
SfaNI GCATC 2 cut(s) 762, 913
SfuI TTCGAA 1 cut(s) 402
SinI GGWCC 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 899
SmoI CTYRAG 1 cut(s) 899
SpeI ACTAGT 1 cut(s) 239
Sse9I AATT 3 cut(s) 229, 294, 432
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 3 cut(s) 124, 178, 346
SspMI CTAG 2 cut(s) 240, 822
StuI AGGCCT 1 cut(s) 161
TaiI ACGT 3 cut(s) 187, 201, 409
TaqI TCGA 5 cut(s) 204, 402, 455, 499, 701
TasI AATT 3 cut(s) 229, 294, 432
TatI WGTACW 1 cut(s) 98
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 1 cut(s) 671
TscAI CASTG 4 cut(s) 376, 613, 920, 976
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 348
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 2 cut(s) 498, 630
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 4 cut(s) 376, 613, 920, 976
VpaK11BI GGWCC 1 cut(s) 600
XapI RAATTY 1 cut(s) 432
XceI RCATGY 1 cut(s) 151
XspI CTAG 2 cut(s) 240, 822
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.