Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015396

Physical Location & Seq

Genomic Coordinates Reverse (-)

6679306 .. 6682054

Gene Structure 2749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCGGAAGAGAAGAAAGCTCCAATCAGTGTCTGGACTACCGTGAAGCCCTTCGTCAATGGCGGTGCCTCTGGTATGCTCGCTACTTGCGTTATCCAGCCGATCGACATGATTAAGGTGAGGATTCAACTTGGTCAGGGATCTGCAGCCAGTATAACCACCAACATGCTTAAGAATGAGGGCGTTGGTGCCTTCTACAAGGGATTATCTGCTGGGTTGCTGAGGCAAGCAACTTACACGACAGCCCGTCTTGGATCATTCAAGTTGCTGACTGCAAAGGCAATTGAGTCTAATGATGGAAAGCCTCTACCGCTGTATCAGAAGGCACTATGTGGTCTGACAGCTGGTGCTATTGGTGCTTGCGTCGGTAGTCCAGCCGATCTAGCACTTATCAGAATGCAGGCCGATAATACTTTGCCGCTAGCTCAGCGCAGGAATTATACCAATGCTTTCCATGCGCTTACCCGTATTAGCGCTGATGAGGGAGTTTTAGCACTTTGGAAAGGGTGTGGGCCCACTGTGGTCAGAGCTATGGCTTTGAACATGGGAATGCTTGCATCTTATGATCAAAGTGCTGAATACATGAGAGATAATCTTGGTTTCGGGGAGATGTCTACGGTCGTAGGAGCAAGTGCTGTTTCTGGGTTCTGCGCTGCGGCTTGCAGTCTGCCATTTGACTTTGTCAAAACTCAGATTCAGAAAATGCAACCGGATGCTCAAGGAAAGTATCCATACACAGGTTCGCTCGATTGTGCGATGAAAACCTTAAAAGAAGGAGGACCTCTGAAATTTTACTCGGGTTTCCCAGTTTACTGTGTCAGGATTGCCCCTCACGTCATGATGACATGGATCTTCCTAAACCAGATTACGAAATTTCAAAAGAAGATTGGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006839 GO:0006842 GO:0008150 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015140 GO:0015142 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015367 GO:0015556 GO:0015711 GO:0015740 GO:0015742 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022804 GO:0022857 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035674 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051181 GO:0051234 GO:0055044 GO:0055085 GO:0071423 GO:0071702 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

298

Amino Acids

31.91

Weight (kDa)

9.35

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	14 - 90	4.2e-16	Mitochondrial carrier protein
Mito_carr	PF00153	102 - 197	7.3e-21	Mitochondrial carrier protein
Mito_carr	PF00153	208 - 293	2.2e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19760
fragaria_vesca	FvH4_3g45500 FvH4_3g45500
malus_domestica	MD03G1004300.v1.1 MD11G1004900.v1.1
prunus_persica	Prupe.6G003900_v2.0.a1
pyrus_communis	pycom03g00440 pycom11g00400
rosa_chinensis	RchiOBHm_Chr5g0083291
rosa_laevigata	RLG00000037027
rosa_multiflora	Rmu_sc0011792.1_g000009
rosa_roxburghii	Rroxscaffold_1G00001200
rosa_rugosa	Rorug05G0484100
rosa_samantha	Rh5AG533400 Rh5BG560900
rosa_wichuraiana	Rw5G049940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	65, 188
AccI	GTMKAC	1 cut(s)	614
AciI	CCGC	5 cut(s)	5, 63, 311, 419, 656
AclWI	GGATC	3 cut(s)	148, 262, 857
AcsI	RAATTY	2 cut(s)	788, 872
AdeI	CACNNNGTG	1 cut(s)	332
AfeI	AGCGCT	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	737
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	4 cut(s)	128, 262, 541, 878
AhdI	GACNNNNNGTC	1 cut(s)	246
AjiI	CACGTC	1 cut(s)	835
AluBI	AGCT	4 cut(s)	20, 344, 425, 530
AluI	AGCT	4 cut(s)	20, 344, 425, 530
AlwI	GGATC	3 cut(s)	148, 262, 857
AlwNI	CAGNNNCTG	1 cut(s)	33
Ama87I	CYCGRG	1 cut(s)	796
Aor51HI	AGCGCT	1 cut(s)	475
AoxI	GGCC	2 cut(s)	402, 512
ApaI	GGGCCC	1 cut(s)	516
ApeKI	GCWGC	2 cut(s)	146, 653
ApoI	RAATTY	2 cut(s)	788, 872
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	4 cut(s)	432, 460, 476, 653
AspS9I	GGNCC	3 cut(s)	512, 513, 779
AsuHPI	GGTGA	1 cut(s)	130
AsuNHI	GCTAGC	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	796
AvaII	GGWCC	1 cut(s)	779
BaeGI	GKGCMC	1 cut(s)	516
BaeI	ACNNNNGTAYC	2 cut(s)	299, 332
BanI	GGYRCC	2 cut(s)	65, 188
BanII	GRGCYC	1 cut(s)	516
BbvCI	CCTCAGC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	158, 640
BccI	CCATC	1 cut(s)	290
BciVI	GTATCC	1 cut(s)	738
BclI	TGATCA	1 cut(s)	565
BfaI	CTAG	2 cut(s)	383, 422
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	477
BfrI	CTTAAG	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	738
BisI	GCNGC	4 cut(s)	147, 419, 654, 657
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	4 cut(s)	148, 420, 655, 658
Bme18I	GGWCC	1 cut(s)	779
BmeRI	GACNNNNNGTC	1 cut(s)	246
BmeT110I	CYCGRG	1 cut(s)	796
BmgBI	CACGTC	1 cut(s)	835
BmgT120I	GGNCC	3 cut(s)	512, 513, 779
BmiI	GGNNCC	3 cut(s)	67, 190, 514
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	2 cut(s)	566, 703
BmtI	GCTAGC	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	800
Bpu10I	CCTNAGC	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	702
BsaWI	WCCGGW	1 cut(s)	709
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse1I	ACTGG	2 cut(s)	150, 806
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMII	CTCAG	3 cut(s)	212, 440, 704
BseNI	ACTGG	2 cut(s)	150, 806
BseSI	GKGCMC	1 cut(s)	516
BseXI	GCAGC	2 cut(s)	158, 640
BseYI	CCCAGC	1 cut(s)	212
Bsh1285I	CGRYCG	2 cut(s)	105, 621
BshFI	GGCC	2 cut(s)	404, 514
BshNI	GGYRCC	2 cut(s)	65, 188
BsiEI	CGRYCG	2 cut(s)	105, 621
BsiHKCI	CYCGRG	1 cut(s)	796
BsiSI	CCGG	1 cut(s)	710
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmI	GAATGC	2 cut(s)	402, 555
BsnI	GGCC	2 cut(s)	404, 514
BsoBI	CYCGRG	1 cut(s)	796
Bsp120I	GGGCCC	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	6 cut(s)	102, 140, 254, 379, 565, 849
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	5 cut(s)	5, 63, 311, 419, 656
BspANI	GGCC	2 cut(s)	404, 514
BspCNI	CTCAG	3 cut(s)	213, 439, 703
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	3 cut(s)	67, 190, 514
BspMAI	CTGCAG	1 cut(s)	148
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	3 cut(s)	148, 262, 857
BspT107I	GGYRCC	2 cut(s)	65, 188
BspTI	CTTAAG	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	150, 806
BssMI	GATC	6 cut(s)	102, 140, 254, 379, 565, 849
Bst4CI	ACNGT	4 cut(s)	43, 520, 619, 815
Bst6I	CTCTTC	1 cut(s)	3
BstAFI	CTTAAG	1 cut(s)	170
BstC8I	GCNNGC	7 cut(s)	81, 228, 361, 402, 423, 555, 661
BstDEI	CTNAG	3 cut(s)	221, 426, 690
BstF5I	GGATG	1 cut(s)	718
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	4 cut(s)	432, 460, 476, 653
BstKTI	GATC	6 cut(s)	105, 143, 257, 382, 568, 852
BstMBI	GATC	6 cut(s)	102, 140, 254, 379, 565, 849
BstMCI	CGRYCG	2 cut(s)	105, 621
BstMWI	GCNNNNNNNGC	5 cut(s)	310, 356, 383, 427, 455
BstNSI	RCATGY	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	158, 640
BstX2I	RGATCY	2 cut(s)	140, 849
BstYI	RGATCY	2 cut(s)	140, 849
BsuI	GTATCC	1 cut(s)	738
BsuRI	GGCC	2 cut(s)	404, 514
BtgZI	GCGATG	1 cut(s)	770
BtrI	CACGTC	1 cut(s)	835
BtsCI	GGATG	1 cut(s)	718
BtsIMutI	CAGTG	2 cut(s)	34, 516
Cac8I	GCNNGC	7 cut(s)	81, 228, 361, 402, 423, 555, 661
CaiI	CAGNNNCTG	1 cut(s)	33
CciI	TCATGA	1 cut(s)	837
CfoI	GCGC	4 cut(s)	432, 460, 476, 653
Cfr13I	GGNCC	3 cut(s)	512, 513, 779
CseI	GACGC	1 cut(s)	352
CviAII	CATG	7 cut(s)	109, 166, 455, 544, 583, 838, 846
DdeI	CTNAG	3 cut(s)	221, 426, 690
DpnI	GATC	6 cut(s)	104, 142, 256, 381, 567, 851
DpnII	GATC	6 cut(s)	102, 140, 254, 379, 565, 849
DraIII	CACNNNGTG	1 cut(s)	332
DriI	GACNNNNNGTC	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	779
Eco47III	AGCGCT	1 cut(s)	475
Eco88I	CYCGRG	1 cut(s)	796
EcoO109I	RGGNCCY	1 cut(s)	779
EcoT38I	GRGCYC	1 cut(s)	516
FaeI	CATG	7 cut(s)	112, 169, 458, 547, 586, 841, 849
FatI	CATG	7 cut(s)	108, 165, 454, 543, 582, 837, 845
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	4 cut(s)	147, 419, 654, 657
FokI	GGATG	1 cut(s)	725
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	4 cut(s)	147, 419, 654, 657
FspBI	CTAG	2 cut(s)	383, 422
GlaI	GCGC	4 cut(s)	431, 459, 475, 652
GluI	GCNGC	4 cut(s)	147, 419, 654, 657
GsaI	CCCAGC	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	404, 514
HapII	CCGG	1 cut(s)	710
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	4 cut(s)	432, 460, 476, 653
Hin1II	CATG	7 cut(s)	112, 169, 458, 547, 586, 841, 849
Hin6I	GCGC	4 cut(s)	430, 458, 474, 651
HinP1I	GCGC	4 cut(s)	430, 458, 474, 651
HinfI	GANTC	3 cut(s)	124, 287, 694
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	615, 811
Hpy188I	TCNGA	7 cut(s)	321, 339, 395, 527, 693, 699, 786
Hpy188III	TCNNGA	3 cut(s)	34, 820, 838
Hpy8I	GTNNAC	2 cut(s)	615, 811
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	4 cut(s)	61, 202, 316, 767
HpyCH4III	ACNGT	4 cut(s)	43, 520, 619, 815
HpyCH4IV	ACGT	1 cut(s)	834
HpyCH4V	TGCA	6 cut(s)	146, 275, 400, 557, 663, 706
HpyF10VI	GCNNNNNNNGC	5 cut(s)	310, 356, 383, 427, 455
HpyF3I	CTNAG	3 cut(s)	221, 426, 690
HpySE526I	ACGT	1 cut(s)	834
Hsp92II	CATG	7 cut(s)	112, 169, 458, 547, 586, 841, 849
HspAI	GCGC	4 cut(s)	430, 458, 474, 651
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	6 cut(s)	102, 140, 254, 379, 565, 849
LmnI	GCTCC	2 cut(s)	25, 626
Lsp1109I	GCAGC	2 cut(s)	158, 640
LweI	GCATC	2 cut(s)	566, 703
MaeI	CTAG	2 cut(s)	383, 422
MaeII	ACGT	1 cut(s)	834
MalI	GATC	6 cut(s)	104, 142, 256, 381, 567, 851
MboI	GATC	6 cut(s)	102, 140, 254, 379, 565, 849
MboII	GAAGA	4 cut(s)	20, 25, 844, 895
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	2 cut(s)	140, 849
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	4 cut(s)	282, 436, 788, 872
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	9 cut(s)	79, 114, 172, 216, 315, 475, 770, 792, 840
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	3 cut(s)	114, 171, 767
MslI	CAYNNNNRTG	2 cut(s)	164, 548
MspA1I	CMGCKG	2 cut(s)	313, 344
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	1 cut(s)	710
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	2 cut(s)	402, 555
MwoI	GCNNNNNNNGC	5 cut(s)	310, 356, 383, 427, 455
NdeII	GATC	6 cut(s)	102, 140, 254, 379, 565, 849
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	7 cut(s)	112, 169, 458, 547, 586, 841, 849
NlaIV	GGNNCC	3 cut(s)	67, 190, 514
NspI	RCATGY	1 cut(s)	169
PagI	TCATGA	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	2 cut(s)	402, 555
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	124, 694
PflFI	GACNNNGTC	1 cut(s)	680
PkrI	GCNGC	4 cut(s)	148, 420, 655, 658
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	779
Psp5II	RGGWCCY	1 cut(s)	779
PspFI	CCCAGC	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	67, 190, 514
PspOMI	GGGCCC	1 cut(s)	512
PspPI	GGNCC	3 cut(s)	512, 513, 779
PspPPI	RGGWCCY	1 cut(s)	779
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	33
PsuI	RGATCY	2 cut(s)	140, 849
PsyI	GACNNNGTC	1 cut(s)	680
PvuI	CGATCG	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	164, 548
SaqAI	TTAA	3 cut(s)	114, 171, 767
SatI	GCNGC	4 cut(s)	147, 419, 654, 657
Sau3AI	GATC	6 cut(s)	102, 140, 254, 379, 565, 849
Sau96I	GGNCC	3 cut(s)	512, 513, 779
SchI	GAGTC	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	516
SetI	ASST	9 cut(s)	22, 120, 346, 427, 532, 742, 767, 784, 837
SfaNI	GCATC	2 cut(s)	566, 703
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	779
SmiMI	CAYNNNNRTG	2 cut(s)	164, 548
SmlI	CTYRAG	2 cut(s)	170, 717
SmoI	CTYRAG	2 cut(s)	170, 717
Sse9I	AATT	4 cut(s)	282, 436, 788, 872
SsiI	CCGC	5 cut(s)	5, 63, 311, 419, 656
SspMI	CTAG	2 cut(s)	383, 422
TaaI	ACNGT	4 cut(s)	43, 520, 619, 815
TaiI	ACGT	1 cut(s)	837
TaqI	TCGA	2 cut(s)	105, 747
TasI	AATT	4 cut(s)	282, 436, 788, 872
TauI	GCSGC	2 cut(s)	421, 659
TfiI	GAWTC	2 cut(s)	124, 694
Tru1I	TTAA	3 cut(s)	114, 171, 767
Tru9I	TTAA	3 cut(s)	114, 171, 767
TscAI	CASTG	2 cut(s)	34, 523
TseI	GCWGC	2 cut(s)	146, 653
TspDTI	ATGAA	1 cut(s)	773
TspRI	CASTG	2 cut(s)	34, 523
Tth111I	GACNNNGTC	1 cut(s)	680
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	779
XapI	RAATTY	2 cut(s)	788, 872
XceI	RCATGY	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XmiI	GTMKAC	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	2 cut(s)	383, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.