pycom03g00440

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0015396
Physical Location & Seq
Reverse (-)
370232 .. 373415
3184 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00440.6

Sequence Viewer

Length: 1119 bp
ATGAATCGCGAGTTAGATATTAACATTTTGAAAAACTTTCAGGTCGTGAGGAAAGCAAGGAGGCAGAGGAGGGTCTGTTGGGACTTGGGAGTGCAAGACAATCAGTCTAGCCTGTTAAGTTGCCTCTTTGTTTCTCCTCTTCTGCAACTCCAAAGCAGAATCAGCCCCCGCCCTTTCTTTACCTTCTTCGAGCACCTCACTTCTTCATTTCCAATCCAAATAATGGGAGACAAAGGTACGCCCAAATCTGGTGTTTGGCCCACCGTTAAGCCCTTCGTCAATGGCGGAGCCTCTGGTATGCTTGCTACCTGTGTCATCCAGCCGATTGATATGATCAAGGTGAGAATTCAATTGGGTCAGGGATCAGCTGCCCAGGTCACCAGGACCATGATTAAAGAGGAAGGCTTTGGTGCTTTGTATAAGGGACTCTCTGCTGGGCTACTAAGACAAGCTACATATACCACAGCTCGTCTTGGATCATTCAGGATTCTGACAAACAAAGCAATTGAGGCCAATGATGGGAAGCCTCTACCTCTATACCAGAAAGCCTTGTGTGGGCTAACTGCTGGTGCCATTGGAGCATCTGTTGGAAGTCCAGCAGATTTAGCACTCATTCGTATGCAAGCTGATGCTACTTTGCCTGCTGCTCAGCGCCGTAACTACACAAATGCTTTCCATGCTCTATATCGTATTACTGCAGATGAAGGGGTTTTGGCACTTTGGAAAGGTGCAGGTCCTACTGTAGTTAGAGCAATGGCATTGAACATGGGAATGCTTGCCTCTTATGATCAAAGTGTTGAATTTTTTAAGGATTCCCTTGGATTTGGTGAAGGTGCTACTGTCTTGGGTGCCAGCACCGTTTCAGGGTTTTTCGCTGCTGCTTGCAGTTTGCCCTTTGACTATGTGAAAACCCAAATTCAAAAAATGCAGCCTGATGCTGAGGGAAAGTATCCATACACTGGCTCTTTTGATTGTGCCATGAAAACCCTGAAAGCAGGAGGTCCATTGAAATTTTACACTGGGTTTCCTGTATATTGTGTTAGAATTGCCCCCCATGTCATGATGACATGGATTTTCCTCAACCAGATCCAGAAGTTGGAAAAGAACTTTGGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

373

Amino Acids

40.61

Weight (kDa)

9.61

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19760
fragaria_vesca FvH4_3g45500 FvH4_3g45500
malus_domestica MD03G1004300.v1.1 MD11G1004900.v1.1
prunus_persica Prupe.6G003900_v2.0.a1
pyrus_communis pycom03g00440 pycom11g00400
rosa_chinensis RchiOBHm_Chr5g0083291
rosa_laevigata RLG00000037027
rosa_multiflora Rmu_sc0011792.1_g000009
rosa_roxburghii Rroxscaffold_1G00001200
rosa_rugosa Rorug05G0484100
rosa_samantha Rh5AG533400 Rh5BG560900
rosa_wichuraiana Rw5G049940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 722
AccB1I GGYRCC 2 cut(s) 569, 848
AccB7I CCANNNNNTGG 3 cut(s) 223, 959, 1096
AccII CGCG 1 cut(s) 9
AciI CCGC 2 cut(s) 169, 285
AclWI GGATC 3 cut(s) 370, 484, 1081
AcsI RAATTY 4 cut(s) 345, 800, 915, 1010
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 7 cut(s) 223, 248, 519, 555, 864, 959, 1096
AgsI TTSAA 6 cut(s) 31, 350, 763, 800, 920, 1009
AhdI GACNNNNNGTC 1 cut(s) 103
AjnI CCWGG 2 cut(s) 372, 380
AjuI GAANNNNNNNTTGG 1 cut(s) 1092
AluBI AGCT 4 cut(s) 368, 452, 467, 626
AluI AGCT 4 cut(s) 368, 452, 467, 626
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 3 cut(s) 370, 484, 1081
AoxI GGCC 2 cut(s) 257, 510
ApeKI GCWGC 5 cut(s) 368, 644, 875, 878, 928
ApoI RAATTY 4 cut(s) 345, 800, 915, 1010
AspLEI GCGC 1 cut(s) 654
AspS9I GGNCC 4 cut(s) 258, 384, 734, 1001
AsuHPI GGTGA 3 cut(s) 352, 370, 839
AvaII GGWCC 3 cut(s) 384, 734, 1001
BanI GGYRCC 2 cut(s) 569, 848
Bbv12I GWGCWC 1 cut(s) 195
BbvCI CCTCAGC 1 cut(s) 939
BbvI GCAGC 5 cut(s) 355, 631, 862, 865, 940
BccI CCATC 1 cut(s) 512
BceAI ACGGC 1 cut(s) 639
BciT130I CCWGG 2 cut(s) 374, 382
BciVI GTATCC 1 cut(s) 960
BclI TGATCA 2 cut(s) 333, 787
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 2 cut(s) 696, 741
BfoI RGCGCY 1 cut(s) 655
BfuAI ACCTGC 1 cut(s) 722
BfuI GTATCC 1 cut(s) 960
BisI GCNGC 5 cut(s) 369, 645, 876, 879, 929
BlpI GCTNAGC 1 cut(s) 648
BlsI GCNGC 5 cut(s) 370, 646, 877, 880, 930
Bme1390I CCNGG 2 cut(s) 374, 382
Bme18I GGWCC 3 cut(s) 384, 734, 1001
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgT120I GGNCC 4 cut(s) 258, 384, 734, 1001
BmiI GGNNCC 3 cut(s) 289, 571, 850
BmrFI CCNGG 2 cut(s) 374, 382
BmrI ACTGGG 1 cut(s) 1029
BmsI GCATC 3 cut(s) 590, 619, 925
BmuI ACTGGG 1 cut(s) 1029
Bpu10I CCTNAGC 1 cut(s) 939
Bpu1102I GCTNAGC 1 cut(s) 648
BsaJI CCNNGG 2 cut(s) 372, 817
BsaXI ACNNNNNCTCC 4 cut(s) 61, 91, 570, 600
Bsc4I CCNNNNNNNGG 7 cut(s) 223, 248, 519, 555, 864, 959, 1096
Bse1I ACTGG 2 cut(s) 964, 1024
Bse3DI GCAATG 1 cut(s) 759
BseBI CCWGG 2 cut(s) 374, 382
BseDI CCNNGG 2 cut(s) 372, 817
BseGI GGATG 1 cut(s) 315
BseLI CCNNNNNNNGG 7 cut(s) 223, 248, 519, 555, 864, 959, 1096
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 2 cut(s) 662, 930
BseNI ACTGG 2 cut(s) 964, 1024
BseRI GAGGAG 2 cut(s) 82, 126
BseXI GCAGC 5 cut(s) 355, 631, 862, 865, 940
BseYI CCCAGC 1 cut(s) 434
BsgI GTGCAG 1 cut(s) 750
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 259, 512
BshNI GGYRCC 2 cut(s) 569, 848
BsiHKAI GWGCWC 1 cut(s) 195
BslFI GGGAC 2 cut(s) 95, 438
BslI CCNNNNNNNGG 7 cut(s) 223, 248, 519, 555, 864, 959, 1096
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 2 cut(s) 95, 438
BsmI GAATGC 1 cut(s) 777
BsnI GGCC 2 cut(s) 259, 512
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 5 cut(s) 333, 362, 476, 787, 1086
Bsp1720I GCTNAGC 1 cut(s) 648
Bsp68I TCGCGA 1 cut(s) 9
BspACI CCGC 2 cut(s) 169, 285
BspANI GGCC 2 cut(s) 259, 512
BspCNI CTCAG 2 cut(s) 661, 931
BspFNI CGCG 1 cut(s) 9
BspHI TCATGA 1 cut(s) 1059
BspLI GGNNCC 3 cut(s) 289, 571, 850
BspMAI CTGCAG 1 cut(s) 700
BspMI ACCTGC 1 cut(s) 722
BspPI GGATC 3 cut(s) 370, 484, 1081
BspT107I GGYRCC 2 cut(s) 569, 848
BsrDI GCAATG 1 cut(s) 759
BsrI ACTGG 2 cut(s) 964, 1024
BssECI CCNNGG 2 cut(s) 372, 817
BssMI GATC 5 cut(s) 333, 362, 476, 787, 1086
BssT1I CCWWGG 1 cut(s) 817
Bst2UI CCWGG 2 cut(s) 374, 382
Bst4CI ACNGT 4 cut(s) 265, 742, 841, 859
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 6 cut(s) 303, 624, 642, 777, 853, 883
BstDEI CTNAG 3 cut(s) 443, 648, 939
BstEII GGTNACC 1 cut(s) 376
BstF5I GGATG 1 cut(s) 315
BstFNI CGCG 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 655
BstHHI GCGC 1 cut(s) 654
BstKTI GATC 5 cut(s) 336, 365, 479, 790, 1089
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 5 cut(s) 333, 362, 476, 787, 1086
BstMWI GCNNNNNNNGC 5 cut(s) 162, 509, 578, 605, 677
BstNI CCWGG 2 cut(s) 374, 382
BstPI GGTNACC 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 372, 380
BstSFI CTRYAG 2 cut(s) 696, 741
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 5 cut(s) 355, 631, 862, 865, 940
BstX2I RGATCY 1 cut(s) 1086
BstYI RGATCY 1 cut(s) 1086
BsuI GTATCC 1 cut(s) 960
BsuRI GGCC 2 cut(s) 259, 512
BtsCI GGATG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 957, 1017
BtuMI TCGCGA 1 cut(s) 9
BveI ACCTGC 1 cut(s) 722
Cac8I GCNNGC 6 cut(s) 303, 624, 642, 777, 853, 883
CciI TCATGA 1 cut(s) 1059
CfoI GCGC 1 cut(s) 654
Cfr13I GGNCC 4 cut(s) 258, 384, 734, 1001
Csp6I GTAC 1 cut(s) 237
CviAII CATG 7 cut(s) 388, 677, 766, 979, 1055, 1060, 1068
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 3 cut(s) 443, 648, 939
DpnI GATC 5 cut(s) 335, 364, 478, 789, 1088
DpnII GATC 5 cut(s) 333, 362, 476, 787, 1086
DriI GACNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 817
Eco47I GGWCC 3 cut(s) 384, 734, 1001
Eco91I GGTNACC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 734
EcoO65I GGTNACC 1 cut(s) 376
EcoRI GAATTC 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 372, 380
EcoT14I CCWWGG 1 cut(s) 817
ErhI CCWWGG 1 cut(s) 817
FaeI CATG 7 cut(s) 391, 680, 769, 982, 1058, 1063, 1071
FaqI GGGAC 2 cut(s) 95, 438
FatI CATG 7 cut(s) 387, 676, 765, 978, 1054, 1059, 1067
FauI CCCGC 1 cut(s) 176
FbaI TGATCA 2 cut(s) 333, 787
Fnu4HI GCNGC 5 cut(s) 369, 645, 876, 879, 929
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 5 cut(s) 369, 645, 876, 879, 929
FspBI CTAG 1 cut(s) 108
GlaI GCGC 1 cut(s) 653
GluI GCNGC 5 cut(s) 369, 645, 876, 879, 929
GsaI CCCAGC 1 cut(s) 438
HaeII RGCGCY 1 cut(s) 655
HaeIII GGCC 2 cut(s) 259, 512
HhaI GCGC 1 cut(s) 654
Hin1II CATG 7 cut(s) 391, 680, 769, 982, 1058, 1063, 1071
Hin6I GCGC 1 cut(s) 652
HinP1I GCGC 1 cut(s) 652
HinfI GANTC 5 cut(s) 4, 159, 426, 487, 812
HphI GGTGA 3 cut(s) 352, 370, 839
Hpy188I TCNGA 1 cut(s) 492
Hpy188III TCNNGA 5 cut(s) 8, 46, 484, 1060, 1090
HpyAV CCTTC 5 cut(s) 193, 283, 395, 698, 824
HpyCH4III ACNGT 4 cut(s) 265, 742, 841, 859
HpyCH4V TGCA 7 cut(s) 94, 145, 622, 698, 731, 885, 928
HpyF10VI GCNNNNNNNGC 5 cut(s) 162, 509, 578, 605, 677
HpyF3I CTNAG 3 cut(s) 443, 648, 939
Hsp92II CATG 7 cut(s) 391, 680, 769, 982, 1058, 1063, 1071
HspAI GCGC 1 cut(s) 652
Ksp22I TGATCA 2 cut(s) 333, 787
Kzo9I GATC 5 cut(s) 333, 362, 476, 787, 1086
LmnI GCTCC 2 cut(s) 287, 578
Lsp1109I GCAGC 5 cut(s) 355, 631, 862, 865, 940
LweI GCATC 3 cut(s) 590, 619, 925
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 376, 656
MalI GATC 5 cut(s) 335, 364, 478, 789, 1088
MboI GATC 5 cut(s) 333, 362, 476, 787, 1086
MboII GAAGA 3 cut(s) 131, 178, 195
MfeI CAATTG 2 cut(s) 350, 504
MflI RGATCY 1 cut(s) 1086
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 7 cut(s) 345, 350, 504, 800, 915, 1010, 1044
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 2 cut(s) 568, 1077
MseI TTAA 5 cut(s) 21, 116, 267, 393, 807
MslI CAYNNNNRTG 2 cut(s) 617, 770
MspA1I CMGCKG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 374, 382
MunI CAATTG 2 cut(s) 350, 504
Mva1269I GAATGC 1 cut(s) 777
MvaI CCWGG 2 cut(s) 374, 382
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 5 cut(s) 162, 509, 578, 605, 677
NdeII GATC 5 cut(s) 333, 362, 476, 787, 1086
NlaIII CATG 7 cut(s) 391, 680, 769, 982, 1058, 1063, 1071
NlaIV GGNNCC 3 cut(s) 289, 571, 850
NmuCI GTSAC 1 cut(s) 376
NruI TCGCGA 1 cut(s) 9
PagI TCATGA 1 cut(s) 1059
PctI GAATGC 1 cut(s) 777
PfeI GAWTC 4 cut(s) 4, 159, 487, 812
PflMI CCANNNNNTGG 3 cut(s) 223, 959, 1096
PkrI GCNGC 5 cut(s) 370, 646, 877, 880, 930
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
PpuMI RGGWCCY 1 cut(s) 734
Psp5II RGGWCCY 1 cut(s) 734
Psp6I CCWGG 2 cut(s) 372, 380
PspEI GGTNACC 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 2 cut(s) 372, 380
PspN4I GGNNCC 3 cut(s) 289, 571, 850
PspPI GGNCC 4 cut(s) 258, 384, 734, 1001
PspPPI RGGWCCY 1 cut(s) 734
PstI CTGCAG 1 cut(s) 700
PsuI RGATCY 1 cut(s) 1086
PvuII CAGCTG 1 cut(s) 368
RruI TCGCGA 1 cut(s) 9
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 2 cut(s) 617, 770
SaqAI TTAA 5 cut(s) 21, 116, 267, 393, 807
SatI GCNGC 5 cut(s) 369, 645, 876, 879, 929
Sau3AI GATC 5 cut(s) 333, 362, 476, 787, 1086
Sau96I GGNCC 4 cut(s) 258, 384, 734, 1001
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 2 cut(s) 374, 382
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 3 cut(s) 590, 619, 925
SfcI CTRYAG 2 cut(s) 696, 741
SinI GGWCC 3 cut(s) 384, 734, 1001
SmiMI CAYNNNNRTG 2 cut(s) 617, 770
Sse9I AATT 7 cut(s) 345, 350, 504, 800, 915, 1010, 1044
SsiI CCGC 2 cut(s) 169, 285
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 372, 380
StyI CCWWGG 1 cut(s) 817
TaaI ACNGT 4 cut(s) 265, 742, 841, 859
TaqI TCGA 1 cut(s) 189
TasI AATT 7 cut(s) 345, 350, 504, 800, 915, 1010, 1044
TfiI GAWTC 4 cut(s) 4, 159, 487, 812
Tru1I TTAA 5 cut(s) 21, 116, 267, 393, 807
Tru9I TTAA 5 cut(s) 21, 116, 267, 393, 807
TscAI CASTG 2 cut(s) 964, 1024
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 5 cut(s) 368, 644, 875, 878, 928
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 4 cut(s) 17, 195, 717, 995
TspRI CASTG 2 cut(s) 964, 1024
Van91I CCANNNNNTGG 3 cut(s) 223, 959, 1096
VpaK11BI GGWCC 3 cut(s) 384, 734, 1001
XapI RAATTY 4 cut(s) 345, 800, 915, 1010
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.