Prupe.6G003900_v2.0.a1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015396
Physical Location & Seq
Reverse (-)
413124 .. 417897
4774 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G003900.1

Sequence Viewer

Length: 897 bp
ATGGGAGACAAAAATAAGCCCAAGTCTGGTGTTTGGCCCACCATTAAGCCCTTCGTCAATGGCGGAACCTCTGGTATGCTTGCTACCTGTGTTATCCAACCAGTCGATATGATCAAGGTGAGAATTCAATTGGGTCAGGGATCAGCGGCCCAGGTCACCAGGAACATGATTAAGGAGGAGGGTATCGGTGCTTTGTATAAGGGACTCTCTGCTGGACTGCTAAGACAAGCTACATATACCACAGCTCGGCTTGGATCATTCAGGATTCTGACAAACAAAGCAATTGAGGCCAATGATGGGAAGCCCCTACCTCTATACCAGAAAGCCTTGTGTGGGCTAACTGCTGGTGCCATTGGAGCATCTGTTGGAAGTCCAGCAGATTTAGCACTCATTCGTATGCAGGCCGATGCCACTTTGCCTGCTGCTCAGCGCCGTCACTACACAAATGCTTTCCATGCTCTCTATCGTATTGTTTCAGATGAAGGGGTTTTGGCACTTTGGAAAGGTGCAGGCCCTACTGTAGTTAGAGCAATGGCATTAAACATGGGAATGCTTGCTTCTTATGATCAAAGTGTTGAGTTTTTCAAGGATTCCCTTGGATTTGGTGAAGCTACTACAGTCTTGGGTGCCAGTACTGTTTCAGGATTTTTTGCTGCTGCTTGCAGTTTGCCCTTTGATTATGTGAAAACCCAAATTCAGAAAATGCAACCTGATGCTCAGGGAAAGTATCCATACACTGGCTCTTTTGATTGTGCCTTGAAAACCCTGAAAGCAGGAGGACCATTGAAATTTTACACTGGGTTTCCAGTATATTGTGTTAGAATTGCCCCCCATGTCATGATGACATGGATTTTCCTCAACCAGATCCAGAAGTTGGAAGCAAACTTTGGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

299

Amino Acids

31.95

Weight (kDa)

9.5

Isoelectric Point (pI)

23.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19760
fragaria_vesca FvH4_3g45500 FvH4_3g45500
malus_domestica MD03G1004300.v1.1 MD11G1004900.v1.1
prunus_persica Prupe.6G003900_v2.0.a1
pyrus_communis pycom03g00440 pycom11g00400
rosa_chinensis RchiOBHm_Chr5g0083291
rosa_laevigata RLG00000037027
rosa_multiflora Rmu_sc0011792.1_g000009
rosa_roxburghii Rroxscaffold_1G00001200
rosa_rugosa Rorug05G0484100
rosa_samantha Rh5AG533400 Rh5BG560900
rosa_wichuraiana Rw5G049940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 347, 626
AccB7I CCANNNNNTGG 2 cut(s) 737, 874
AciI CCGC 2 cut(s) 63, 146
AclWI GGATC 3 cut(s) 148, 262, 859
AcsI RAATTY 3 cut(s) 123, 693, 788
AfaI GTAC 1 cut(s) 634
AfiI CCNNNNNNNGG 6 cut(s) 26, 246, 297, 333, 737, 874
AgsI TTSAA 4 cut(s) 128, 586, 760, 787
AjnI CCWGG 2 cut(s) 150, 158
AjuI GAANNNNNNNTTGG 1 cut(s) 870
AluBI AGCT 3 cut(s) 230, 245, 611
AluI AGCT 3 cut(s) 230, 245, 611
AlwI GGATC 3 cut(s) 148, 262, 859
AoxI GGCC 5 cut(s) 35, 147, 288, 402, 511
ApeKI GCWGC 3 cut(s) 422, 653, 656
ApoI RAATTY 3 cut(s) 123, 693, 788
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 4 cut(s) 36, 148, 512, 779
AsuHPI GGTGA 3 cut(s) 130, 148, 617
AvaII GGWCC 1 cut(s) 779
BanI GGYRCC 2 cut(s) 347, 626
BbvI GCAGC 3 cut(s) 409, 640, 643
BccI CCATC 1 cut(s) 290
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 2 cut(s) 152, 160
BciVI GTATCC 1 cut(s) 738
BclI TGATCA 2 cut(s) 111, 565
BfmI CTRYAG 2 cut(s) 519, 615
BfoI RGCGCY 1 cut(s) 433
BfuI GTATCC 1 cut(s) 738
BisI GCNGC 4 cut(s) 147, 423, 654, 657
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 4 cut(s) 148, 424, 655, 658
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 2 cut(s) 152, 160
Bme18I GGWCC 1 cut(s) 779
BmgT120I GGNCC 4 cut(s) 36, 148, 512, 779
BmiI GGNNCC 3 cut(s) 67, 349, 628
BmrFI CCNGG 2 cut(s) 152, 160
BmrI ACTGGG 1 cut(s) 807
BmsI GCATC 3 cut(s) 368, 397, 703
BmuI ACTGGG 1 cut(s) 807
Bpu10I CCTNAGC 1 cut(s) 717
Bpu1102I GCTNAGC 1 cut(s) 426
BsaJI CCNNGG 2 cut(s) 150, 595
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 246, 297, 333, 737, 874
Bse1I ACTGG 5 cut(s) 101, 630, 742, 802, 806
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 2 cut(s) 152, 160
BseDI CCNNGG 2 cut(s) 150, 595
BseLI CCNNNNNNNGG 6 cut(s) 26, 246, 297, 333, 737, 874
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 2 cut(s) 440, 731
BseNI ACTGG 5 cut(s) 101, 630, 742, 802, 806
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 3 cut(s) 409, 640, 643
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 5 cut(s) 37, 149, 290, 404, 513
BshNI GGYRCC 2 cut(s) 347, 626
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 6 cut(s) 26, 246, 297, 333, 737, 874
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 5 cut(s) 37, 149, 290, 404, 513
Bsp143I GATC 5 cut(s) 111, 140, 254, 565, 864
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 2 cut(s) 63, 146
BspANI GGCC 5 cut(s) 37, 149, 290, 404, 513
BspCNI CTCAG 2 cut(s) 439, 730
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 3 cut(s) 67, 349, 628
BspPI GGATC 3 cut(s) 148, 262, 859
BspT107I GGYRCC 2 cut(s) 347, 626
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 5 cut(s) 101, 630, 742, 802, 806
BssECI CCNNGG 2 cut(s) 150, 595
BssMI GATC 5 cut(s) 111, 140, 254, 565, 864
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 2 cut(s) 152, 160
Bst4CI ACNGT 3 cut(s) 520, 619, 637
BstC8I GCNNGC 6 cut(s) 81, 402, 420, 511, 555, 661
BstDEI CTNAG 3 cut(s) 221, 426, 717
BstEII GGTNACC 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 5 cut(s) 114, 143, 257, 568, 867
BstMBI GATC 5 cut(s) 111, 140, 254, 565, 864
BstMWI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
BstNI CCWGG 2 cut(s) 152, 160
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 150, 158
BstSFI CTRYAG 2 cut(s) 519, 615
BstV1I GCAGC 3 cut(s) 409, 640, 643
BstX2I RGATCY 1 cut(s) 864
BstYI RGATCY 1 cut(s) 864
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 5 cut(s) 37, 149, 290, 404, 513
BtsIMutI CAGTG 2 cut(s) 735, 795
Cac8I GCNNGC 6 cut(s) 81, 402, 420, 511, 555, 661
CciI TCATGA 1 cut(s) 837
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 4 cut(s) 36, 148, 512, 779
Csp6I GTAC 1 cut(s) 633
CviAII CATG 6 cut(s) 166, 455, 544, 833, 838, 846
CviQI GTAC 1 cut(s) 633
DdeI CTNAG 3 cut(s) 221, 426, 717
DpnI GATC 5 cut(s) 113, 142, 256, 567, 866
DpnII GATC 5 cut(s) 111, 140, 254, 565, 864
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 779
Eco91I GGTNACC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 512
EcoO65I GGTNACC 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 2 cut(s) 150, 158
EcoT14I CCWWGG 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 595
FaeI CATG 6 cut(s) 169, 458, 547, 836, 841, 849
FaqI GGGAC 1 cut(s) 216
FatI CATG 6 cut(s) 165, 454, 543, 832, 837, 845
FbaI TGATCA 2 cut(s) 111, 565
Fnu4HI GCNGC 4 cut(s) 147, 423, 654, 657
Fsp4HI GCNGC 4 cut(s) 147, 423, 654, 657
GlaI GCGC 1 cut(s) 431
GluI GCNGC 4 cut(s) 147, 423, 654, 657
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 5 cut(s) 37, 149, 290, 404, 513
HhaI GCGC 1 cut(s) 432
Hin1II CATG 6 cut(s) 169, 458, 547, 836, 841, 849
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 3 cut(s) 204, 265, 590
HphI GGTGA 3 cut(s) 130, 148, 617
Hpy188I TCNGA 3 cut(s) 270, 478, 699
Hpy188III TCNNGA 4 cut(s) 262, 642, 838, 868
HpyAV CCTTC 2 cut(s) 61, 476
HpyCH4III ACNGT 3 cut(s) 520, 619, 637
HpyCH4V TGCA 4 cut(s) 400, 509, 663, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
HpyF3I CTNAG 3 cut(s) 221, 426, 717
Hsp92II CATG 6 cut(s) 169, 458, 547, 836, 841, 849
HspAI GCGC 1 cut(s) 430
Ksp22I TGATCA 2 cut(s) 111, 565
Kzo9I GATC 5 cut(s) 111, 140, 254, 565, 864
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 3 cut(s) 409, 640, 643
LweI GCATC 3 cut(s) 368, 397, 703
MaeIII GTNAC 2 cut(s) 154, 434
MalI GATC 5 cut(s) 113, 142, 256, 567, 866
MboI GATC 5 cut(s) 111, 140, 254, 565, 864
MfeI CAATTG 2 cut(s) 128, 282
MflI RGATCY 1 cut(s) 864
MluCI AATT 6 cut(s) 123, 128, 282, 693, 788, 822
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 3 cut(s) 121, 346, 855
MnlI CCTC 7 cut(s) 79, 169, 172, 280, 321, 770, 866
MseI TTAA 3 cut(s) 45, 171, 539
MslI CAYNNNNRTG 2 cut(s) 395, 548
MspA1I CMGCKG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 152, 160
MunI CAATTG 2 cut(s) 128, 282
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 2 cut(s) 152, 160
MwoI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
NdeII GATC 5 cut(s) 111, 140, 254, 565, 864
NlaIII CATG 6 cut(s) 169, 458, 547, 836, 841, 849
NlaIV GGNNCC 3 cut(s) 67, 349, 628
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 2 cut(s) 154, 434
PagI TCATGA 1 cut(s) 837
PctI GAATGC 1 cut(s) 555
PfeI GAWTC 2 cut(s) 265, 590
PflMI CCANNNNNTGG 2 cut(s) 737, 874
PkrI GCNGC 4 cut(s) 148, 424, 655, 658
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 150, 158
PspEI GGTNACC 1 cut(s) 154
PspGI CCWGG 2 cut(s) 150, 158
PspN4I GGNNCC 3 cut(s) 67, 349, 628
PspPI GGNCC 4 cut(s) 36, 148, 512, 779
PsuI RGATCY 1 cut(s) 864
RsaI GTAC 1 cut(s) 634
RsaNI GTAC 1 cut(s) 633
RseI CAYNNNNRTG 2 cut(s) 395, 548
SaqAI TTAA 3 cut(s) 45, 171, 539
SatI GCNGC 4 cut(s) 147, 423, 654, 657
Sau3AI GATC 5 cut(s) 111, 140, 254, 565, 864
Sau96I GGNCC 4 cut(s) 36, 148, 512, 779
ScaI AGTACT 1 cut(s) 634
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 2 cut(s) 152, 160
SfaNI GCATC 3 cut(s) 368, 397, 703
SfcI CTRYAG 2 cut(s) 519, 615
SinI GGWCC 1 cut(s) 779
SmiMI CAYNNNNRTG 2 cut(s) 395, 548
Sse9I AATT 6 cut(s) 123, 128, 282, 693, 788, 822
SsiI CCGC 2 cut(s) 63, 146
StyD4I CCNGG 2 cut(s) 150, 158
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 3 cut(s) 520, 619, 637
TaqI TCGA 1 cut(s) 105
TasI AATT 6 cut(s) 123, 128, 282, 693, 788, 822
TatI WGTACW 1 cut(s) 632
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 265, 590
Tru1I TTAA 3 cut(s) 45, 171, 539
Tru9I TTAA 3 cut(s) 45, 171, 539
TscAI CASTG 2 cut(s) 742, 802
TseFI GTSAC 2 cut(s) 154, 434
TseI GCWGC 3 cut(s) 422, 653, 656
Tsp45I GTSAC 2 cut(s) 154, 434
TspDTI ATGAA 1 cut(s) 495
TspRI CASTG 2 cut(s) 742, 802
Van91I CCANNNNNTGG 2 cut(s) 737, 874
VpaK11BI GGWCC 1 cut(s) 779
XapI RAATTY 3 cut(s) 123, 693, 788
ZrmI AGTACT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.