Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015396

Physical Location & Seq

Genomic Coordinates Reverse (-)

453486 .. 456856

Gene Structure 3371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1004900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGAGACAAAGGTACGCCCAAATCTGGTGTTTGGCCAACCATTAAGCCCTTCGTCAATGGCGGAGCCTCTGGTATGCTTGCTACCTGTGTCATCCAGCCAATCGATATGATCAAGGTGAGAATTCAATTGGGTCAGGGATCAGCTGCCCAGGTCACCAGGACCATGATTAAAGAGGAAGGTGTTGGTGCTTTGTATAAGGGACTCTCTGCTGGACTACTAAGACAAGCTACATATACCACAGCTCGTCTTGGATCATTCAGGATTCTGACAAACAAAGCAATTGAGGCCAATGATGGGAAGCCCCTACCTCTATACCAGAAAGCCTTGTGTGGGCTAACCGCTGGTGCCATTGGAGCATCTGTTGGAAGTCCAGCAGATTTAGCACTCATTCGTATGCAAGCTGATGCTACTTTGCCTGCTGCTCAGCGCCGGAACTACACAAATGCTTTCCATGCTCTCTATCGCATTACTGCAGATGAAGGGGTTTTGGCACTTTGGAAAGGTGCAGGCCCTACTGTAGTTAGAGCGATGGCATTGAACATGGGAATGCTTGCCTCTTATGATCAAAGTGTTGAGTTTTGCAAGGATACCCTTGGATTTGGTGAAGCTGCTACTATCTTGGGTGCCAGTACCGTTTCAGGGTTTTTCGCTGCTGCTTGCAGTTTGCCCTTTGACTATGTGAAAACCCAAATTCAGAAAATGCAGCCTGATGCCCAGGGGAAGTATCCATACACTGGCTCTTTTGATTGTGCCATGAAAACCCTGAAAGCAGGAGGACCATTGAAATTTTACACTGGGTTTCCGGTATATTGTGTTAGAATTGCTCCCCATGTCATGATGACATGGATTTTCCTCAACCAGATCCAGAAGTTGGAAAAGAAAGTTGGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

299

Amino Acids

31.78

Weight (kDa)

9.5

Isoelectric Point (pI)

20.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	14 - 90	2.6e-17	Mitochondrial carrier protein
Mito_carr	PF00153	102 - 195	6.7e-20	Mitochondrial carrier protein
Mito_carr	PF00153	208 - 292	1.6e-14	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19760
fragaria_vesca	FvH4_3g45500 FvH4_3g45500
malus_domestica	MD03G1004300.v1.1 MD11G1004900.v1.1
prunus_persica	Prupe.6G003900_v2.0.a1
pyrus_communis	pycom03g00440 pycom11g00400
rosa_chinensis	RchiOBHm_Chr5g0083291
rosa_laevigata	RLG00000037027
rosa_multiflora	Rmu_sc0011792.1_g000009
rosa_roxburghii	Rroxscaffold_1G00001200
rosa_rugosa	Rorug05G0484100
rosa_samantha	Rh5AG533400 Rh5BG560900
rosa_wichuraiana	Rw5G049940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	347, 626
AccB7I	CCANNNNNTGG	2 cut(s)	737, 874
AciI	CCGC	2 cut(s)	63, 342
AclWI	GGATC	3 cut(s)	148, 262, 859
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	3 cut(s)	123, 693, 788
AfaI	GTAC	2 cut(s)	16, 634
AfiI	CCNNNNNNNGG	6 cut(s)	26, 297, 333, 642, 737, 874
AgsI	TTSAA	3 cut(s)	128, 541, 787
AjnI	CCWGG	3 cut(s)	150, 158, 717
AjuI	GAANNNNNNNTTGG	1 cut(s)	870
AluBI	AGCT	5 cut(s)	146, 230, 245, 404, 611
AluI	AGCT	5 cut(s)	146, 230, 245, 404, 611
AlwI	GGATC	3 cut(s)	148, 262, 859
AoxI	GGCC	3 cut(s)	35, 288, 511
ApeKI	GCWGC	6 cut(s)	146, 422, 611, 653, 656, 706
ApoI	RAATTY	3 cut(s)	123, 693, 788
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	3 cut(s)	162, 512, 779
AsuHPI	GGTGA	3 cut(s)	130, 148, 617
AvaII	GGWCC	2 cut(s)	162, 779
BalI	TGGCCA	1 cut(s)	37
BanI	GGYRCC	2 cut(s)	347, 626
BarI	GAAGNNNNNNTAC	2 cut(s)	716, 748
BbvI	GCAGC	6 cut(s)	133, 409, 598, 640, 643, 718
BccI	CCATC	2 cut(s)	290, 526
BciT130I	CCWGG	3 cut(s)	152, 160, 719
BciVI	GTATCC	2 cut(s)	583, 738
BclI	TGATCA	2 cut(s)	111, 565
BfmI	CTRYAG	2 cut(s)	474, 519
BfoI	RGCGCY	1 cut(s)	433
BfuI	GTATCC	2 cut(s)	583, 738
BisI	GCNGC	6 cut(s)	147, 423, 612, 654, 657, 707
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	6 cut(s)	148, 424, 613, 655, 658, 708
Bme1390I	CCNGG	3 cut(s)	152, 160, 719
Bme18I	GGWCC	2 cut(s)	162, 779
BmgT120I	GGNCC	3 cut(s)	162, 512, 779
BmiI	GGNNCC	3 cut(s)	67, 349, 628
BmrFI	CCNGG	3 cut(s)	152, 160, 719
BmrI	ACTGGG	1 cut(s)	807
BmsI	GCATC	3 cut(s)	368, 397, 703
BmuI	ACTGGG	1 cut(s)	807
Bpu1102I	GCTNAGC	1 cut(s)	426
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	4 cut(s)	150, 595, 717, 718
BsaWI	WCCGGW	1 cut(s)	805
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 297, 333, 642, 737, 874
Bse1I	ACTGG	3 cut(s)	630, 742, 802
BseBI	CCWGG	3 cut(s)	152, 160, 719
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	4 cut(s)	150, 595, 717, 718
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	6 cut(s)	26, 297, 333, 642, 737, 874
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	3 cut(s)	630, 742, 802
BseXI	GCAGC	6 cut(s)	133, 409, 598, 640, 643, 718
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	37, 290, 513
BshNI	GGYRCC	2 cut(s)	347, 626
BshVI	ATCGAT	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	433, 806
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	6 cut(s)	26, 297, 333, 642, 737, 874
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	3 cut(s)	37, 290, 513
Bsp143I	GATC	5 cut(s)	111, 140, 254, 565, 864
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	2 cut(s)	63, 342
BspANI	GGCC	3 cut(s)	37, 290, 513
BspCNI	CTCAG	1 cut(s)	439
BspDI	ATCGAT	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	3 cut(s)	67, 349, 628
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	3 cut(s)	148, 262, 859
BspT107I	GGYRCC	2 cut(s)	347, 626
BsrI	ACTGG	3 cut(s)	630, 742, 802
BssECI	CCNNGG	4 cut(s)	150, 595, 717, 718
BssMI	GATC	5 cut(s)	111, 140, 254, 565, 864
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	3 cut(s)	152, 160, 719
Bst4CI	ACNGT	2 cut(s)	520, 637
BstC8I	GCNNGC	6 cut(s)	81, 402, 420, 511, 555, 661
BstDEI	CTNAG	2 cut(s)	221, 426
BstEII	GGTNACC	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	5 cut(s)	114, 143, 257, 568, 867
BstMBI	GATC	5 cut(s)	111, 140, 254, 565, 864
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 356, 383, 455
BstNI	CCWGG	3 cut(s)	152, 160, 719
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	3 cut(s)	150, 158, 717
BstSFI	CTRYAG	2 cut(s)	474, 519
BstV1I	GCAGC	6 cut(s)	133, 409, 598, 640, 643, 718
BstX2I	RGATCY	1 cut(s)	864
BstYI	RGATCY	1 cut(s)	864
Bsu15I	ATCGAT	1 cut(s)	105
BsuI	GTATCC	2 cut(s)	583, 738
BsuRI	GGCC	3 cut(s)	37, 290, 513
BsuTUI	ATCGAT	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	545
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	735, 795
Cac8I	GCNNGC	6 cut(s)	81, 402, 420, 511, 555, 661
CciI	TCATGA	1 cut(s)	837
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	3 cut(s)	162, 512, 779
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	15, 633
CviAII	CATG	7 cut(s)	166, 455, 544, 757, 833, 838, 846
CviQI	GTAC	2 cut(s)	15, 633
DdeI	CTNAG	2 cut(s)	221, 426
DpnI	GATC	5 cut(s)	113, 142, 256, 567, 866
DpnII	GATC	5 cut(s)	111, 140, 254, 565, 864
EaeI	YGGCCR	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	595
Eco47I	GGWCC	2 cut(s)	162, 779
Eco91I	GGTNACC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	512
EcoO65I	GGTNACC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	123
EcoRII	CCWGG	3 cut(s)	150, 158, 717
EcoT14I	CCWWGG	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	7 cut(s)	169, 458, 547, 760, 836, 841, 849
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	7 cut(s)	165, 454, 543, 756, 832, 837, 845
FbaI	TGATCA	2 cut(s)	111, 565
Fnu4HI	GCNGC	6 cut(s)	147, 423, 612, 654, 657, 707
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	6 cut(s)	147, 423, 612, 654, 657, 707
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	6 cut(s)	147, 423, 612, 654, 657, 707
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	3 cut(s)	37, 290, 513
HapII	CCGG	2 cut(s)	433, 806
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	7 cut(s)	169, 458, 547, 760, 836, 841, 849
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HinfI	GANTC	2 cut(s)	204, 265
HpaII	CCGG	2 cut(s)	433, 806
HphI	GGTGA	3 cut(s)	130, 148, 617
Hpy188I	TCNGA	2 cut(s)	270, 699
Hpy188III	TCNNGA	3 cut(s)	262, 838, 868
HpyAV	CCTTC	3 cut(s)	61, 173, 476
HpyCH4III	ACNGT	2 cut(s)	520, 637
HpyCH4V	TGCA	6 cut(s)	400, 476, 509, 585, 663, 706
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 356, 383, 455
HpyF3I	CTNAG	2 cut(s)	221, 426
Hsp92II	CATG	7 cut(s)	169, 458, 547, 760, 836, 841, 849
HspAI	GCGC	1 cut(s)	430
Ksp22I	TGATCA	2 cut(s)	111, 565
Kzo9I	GATC	5 cut(s)	111, 140, 254, 565, 864
LmnI	GCTCC	3 cut(s)	65, 356, 832
Lsp1109I	GCAGC	6 cut(s)	133, 409, 598, 640, 643, 718
LweI	GCATC	3 cut(s)	368, 397, 703
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	5 cut(s)	113, 142, 256, 567, 866
MboI	GATC	5 cut(s)	111, 140, 254, 565, 864
MfeI	CAATTG	2 cut(s)	128, 282
MflI	RGATCY	1 cut(s)	864
MlsI	TGGCCA	1 cut(s)	37
MluCI	AATT	6 cut(s)	123, 128, 282, 693, 788, 822
MluNI	TGGCCA	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	2 cut(s)	346, 855
MnlI	CCTC	7 cut(s)	79, 169, 280, 321, 568, 770, 866
Mox20I	TGGCCA	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	37
MseI	TTAA	2 cut(s)	45, 171
MslI	CAYNNNNRTG	2 cut(s)	395, 548
Msp20I	TGGCCA	1 cut(s)	37
MspA1I	CMGCKG	2 cut(s)	146, 344
MspI	CCGG	2 cut(s)	433, 806
MspR9I	CCNGG	3 cut(s)	152, 160, 719
MunI	CAATTG	2 cut(s)	128, 282
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	3 cut(s)	152, 160, 719
MwoI	GCNNNNNNNGC	4 cut(s)	287, 356, 383, 455
NdeII	GATC	5 cut(s)	111, 140, 254, 565, 864
NlaIII	CATG	7 cut(s)	169, 458, 547, 760, 836, 841, 849
NlaIV	GGNNCC	3 cut(s)	67, 349, 628
NmuCI	GTSAC	1 cut(s)	154
PagI	TCATGA	1 cut(s)	837
PasI	CCCWGGG	1 cut(s)	718
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	265
PflMI	CCANNNNNTGG	2 cut(s)	737, 874
PkrI	GCNGC	6 cut(s)	148, 424, 613, 655, 658, 708
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
Psp6I	CCWGG	3 cut(s)	150, 158, 717
PspEI	GGTNACC	1 cut(s)	154
PspGI	CCWGG	3 cut(s)	150, 158, 717
PspN4I	GGNNCC	3 cut(s)	67, 349, 628
PspPI	GGNCC	3 cut(s)	162, 512, 779
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	864
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	16, 634
RsaNI	GTAC	2 cut(s)	15, 633
RseI	CAYNNNNRTG	2 cut(s)	395, 548
SaqAI	TTAA	2 cut(s)	45, 171
SatI	GCNGC	6 cut(s)	147, 423, 612, 654, 657, 707
Sau3AI	GATC	5 cut(s)	111, 140, 254, 565, 864
Sau96I	GGNCC	3 cut(s)	162, 512, 779
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	3 cut(s)	152, 160, 719
SfaNI	GCATC	3 cut(s)	368, 397, 703
SfcI	CTRYAG	2 cut(s)	474, 519
SinI	GGWCC	2 cut(s)	162, 779
SmiMI	CAYNNNNRTG	2 cut(s)	395, 548
Sse9I	AATT	6 cut(s)	123, 128, 282, 693, 788, 822
SsiI	CCGC	2 cut(s)	63, 342
StyD4I	CCNGG	3 cut(s)	150, 158, 717
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	2 cut(s)	520, 637
TaqI	TCGA	1 cut(s)	105
TasI	AATT	6 cut(s)	123, 128, 282, 693, 788, 822
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	2 cut(s)	45, 171
Tru9I	TTAA	2 cut(s)	45, 171
TscAI	CASTG	2 cut(s)	742, 802
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	6 cut(s)	146, 422, 611, 653, 656, 706
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	495, 773
TspRI	CASTG	2 cut(s)	742, 802
Van91I	CCANNNNNTGG	2 cut(s)	737, 874
VpaK11BI	GGWCC	2 cut(s)	162, 779
XapI	RAATTY	3 cut(s)	123, 693, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.