RLG00000037027

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015396
Physical Location & Seq
Forward (+)
87642283 .. 87645698
3416 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037027

Sequence Viewer

Length: 708 bp
ATGGAGAAGAAGGGTCTCTCTGCTGGACTACTAAGACAAGCTACATATACCACAGCTCGTCTTGGATCATTCAGGATTCTGACAAACAAAGCAATTGCGGCCAATGATGGGAAGCCCCTACCTCTATACCAGAAAGCCTTGTGTGGGCTAACTGCTGGTGCTATTGGAGCATGTGTTGGAAGTCCAGCAGATTTAGCTCTCATTCGTATGCAGGCAGATGCCACTTTACCCCTTGCTCAGCGCCGTCACTATAAGAATGCTTTCCATGCTCTTGGTCGCATTGTTGCAGATGAAGGGGTTTTGTCACTTTGGAAAGGTGCAGGCCCTACTGTGGTAAGAGCAATGGCATTGAACATGGGAATGCTTGCCTCTTATGATCAAAGTGTTGAGTTTTTCAAGGATTCCCTTGGTTGTGGTGAAGCTACTACAGTATTGGGTGCAAGTACTGTTTCAGGTTTTTTTGCTGCAGCCTGCAGTTTGCCCTTTGATTATGTGAAAACCCAGATTCAGAAAATGCAACCTGATGCTGAGGGGAAGTATCCATACACTGGGTCTTTTGATTGTGCCGTGAAAACCCTGAAAGCAGGAGGACCATTGAAATTTTACACTGGGTTTCCAGTATATTGTGTTAGAATTGCCCCCCATGTCATGATGACATGGATCTTCCTCAACCAGATCCAGAAGTTGGAAGCTAAAGTTGGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

236

Amino Acids

25.15

Weight (kDa)

9.37

Isoelectric Point (pI)

27.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 39 - 134 1e-20 Mitochondrial carrier protein
Mito_carr PF00153 145 - 229 1.4e-14 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19760
fragaria_vesca FvH4_3g45500 FvH4_3g45500
malus_domestica MD03G1004300.v1.1 MD11G1004900.v1.1
prunus_persica Prupe.6G003900_v2.0.a1
pyrus_communis pycom03g00440 pycom11g00400
rosa_chinensis RchiOBHm_Chr5g0083291
rosa_laevigata RLG00000037027
rosa_multiflora Rmu_sc0011792.1_g000009
rosa_roxburghii Rroxscaffold_1G00001200
rosa_rugosa Rorug05G0484100
rosa_samantha Rh5AG533400 Rh5BG560900
rosa_wichuraiana Rw5G049940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 548, 685
AciI CCGC 1 cut(s) 98
AclWI GGATC 3 cut(s) 73, 668, 670
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 599
AfaI GTAC 1 cut(s) 445
AfiI CCNNNNNNNGG 5 cut(s) 108, 144, 331, 548, 685
AgsI TTSAA 3 cut(s) 352, 397, 598
AjuI GAANNNNNNNTTGG 1 cut(s) 681
AluBI AGCT 5 cut(s) 41, 56, 197, 422, 692
AluI AGCT 5 cut(s) 41, 56, 197, 422, 692
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 3 cut(s) 73, 668, 670
AoxI GGCC 2 cut(s) 99, 322
ApeKI GCWGC 2 cut(s) 464, 467
ApoI RAATTY 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 323, 590
AsuHPI GGTGA 1 cut(s) 428
AvaII GGWCC 1 cut(s) 590
BarI GAAGNNNNNNTAC 2 cut(s) 527, 559
BbvCI CCTCAGC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 451, 479
BccI CCATC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 228, 551
BciVI GTATCC 1 cut(s) 549
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 20
BfmI CTRYAG 3 cut(s) 426, 465, 472
BfoI RGCGCY 1 cut(s) 244
BfuI GTATCC 1 cut(s) 549
BisI GCNGC 3 cut(s) 99, 465, 468
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 3 cut(s) 100, 466, 469
BmcAI AGTACT 1 cut(s) 445
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 2 cut(s) 323, 590
BmrI ACTGGG 2 cut(s) 558, 618
BmsI GCATC 2 cut(s) 208, 514
BmuI ACTGGG 2 cut(s) 558, 618
Bpu10I CCTNAGC 1 cut(s) 528
Bpu1102I GCTNAGC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 5 cut(s) 108, 144, 331, 548, 685
Bse1I ACTGG 3 cut(s) 553, 613, 617
Bse3DI GCAATG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 406
BseLI CCNNNNNNNGG 5 cut(s) 108, 144, 331, 548, 685
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 2 cut(s) 251, 519
BseNI ACTGG 3 cut(s) 553, 613, 617
BseXI GCAGC 2 cut(s) 451, 479
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 2 cut(s) 101, 324
BslI CCNNNNNNNGG 5 cut(s) 108, 144, 331, 548, 685
BsmAI GTCTC 1 cut(s) 20
BsmI GAATGC 2 cut(s) 262, 366
BsnI GGCC 2 cut(s) 101, 324
Bso31I GGTCTC 1 cut(s) 20
Bsp143I GATC 4 cut(s) 65, 376, 660, 675
Bsp1720I GCTNAGC 1 cut(s) 237
BspACI CCGC 1 cut(s) 98
BspANI GGCC 2 cut(s) 101, 324
BspCNI CTCAG 2 cut(s) 250, 520
BspHI TCATGA 1 cut(s) 648
BspMAI CTGCAG 2 cut(s) 469, 476
BspPI GGATC 3 cut(s) 73, 668, 670
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 348
BsrI ACTGG 3 cut(s) 553, 613, 617
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 4 cut(s) 65, 376, 660, 675
BssT1I CCWWGG 1 cut(s) 406
Bst4CI ACNGT 3 cut(s) 331, 430, 448
BstC8I GCNNGC 4 cut(s) 213, 322, 366, 472
BstDEI CTNAG 3 cut(s) 32, 237, 528
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 4 cut(s) 68, 379, 663, 678
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 4 cut(s) 65, 376, 660, 675
BstMWI GCNNNNNNNGC 4 cut(s) 98, 167, 194, 266
BstNSI RCATGY 1 cut(s) 174
BstSFI CTRYAG 3 cut(s) 426, 465, 472
BstV1I GCAGC 2 cut(s) 451, 479
BstX2I RGATCY 2 cut(s) 660, 675
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 2 cut(s) 660, 675
BsuI GTATCC 1 cut(s) 549
BsuRI GGCC 2 cut(s) 101, 324
BtsIMutI CAGTG 2 cut(s) 546, 606
Cac8I GCNNGC 4 cut(s) 213, 322, 366, 472
CciI TCATGA 1 cut(s) 648
CfoI GCGC 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 323, 590
Csp6I GTAC 1 cut(s) 444
CviAII CATG 6 cut(s) 171, 266, 355, 644, 649, 657
CviQI GTAC 1 cut(s) 444
DdeI CTNAG 3 cut(s) 32, 237, 528
DpnI GATC 4 cut(s) 67, 378, 662, 677
DpnII GATC 4 cut(s) 65, 376, 660, 675
EaeI YGGCCR 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 406
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 590
EcoO109I RGGNCCY 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 6 cut(s) 174, 269, 358, 647, 652, 660
FatI CATG 6 cut(s) 170, 265, 354, 643, 648, 656
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 3 cut(s) 99, 465, 468
Fsp4HI GCNGC 3 cut(s) 99, 465, 468
GlaI GCGC 1 cut(s) 242
GluI GCNGC 3 cut(s) 99, 465, 468
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 2 cut(s) 101, 324
HhaI GCGC 1 cut(s) 243
Hin1II CATG 6 cut(s) 174, 269, 358, 647, 652, 660
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HinfI GANTC 3 cut(s) 76, 401, 505
HphI GGTGA 1 cut(s) 428
Hpy188I TCNGA 2 cut(s) 81, 510
Hpy188III TCNNGA 3 cut(s) 73, 649, 679
HpyAV CCTTC 2 cut(s) 4, 287
HpyCH4III ACNGT 3 cut(s) 331, 430, 448
HpyCH4V TGCA 7 cut(s) 211, 287, 320, 440, 467, 474, 517
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 167, 194, 266
HpyF3I CTNAG 3 cut(s) 32, 237, 528
Hsp92II CATG 6 cut(s) 174, 269, 358, 647, 652, 660
HspAI GCGC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 4 cut(s) 65, 376, 660, 675
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 2 cut(s) 451, 479
LweI GCATC 2 cut(s) 208, 514
MaeIII GTNAC 2 cut(s) 245, 303
MalI GATC 4 cut(s) 67, 378, 662, 677
MboI GATC 4 cut(s) 65, 376, 660, 675
MboII GAAGA 2 cut(s) 19, 655
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 2 cut(s) 660, 675
MluCI AATT 3 cut(s) 93, 599, 633
MmeI TCCRAC 2 cut(s) 157, 666
MnlI CCTC 5 cut(s) 132, 379, 523, 581, 677
MroXI GAANNNNTTC 1 cut(s) 260
MslI CAYNNNNRTG 2 cut(s) 206, 359
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 2 cut(s) 262, 366
MwoI GCNNNNNNNGC 4 cut(s) 98, 167, 194, 266
NdeII GATC 4 cut(s) 65, 376, 660, 675
NlaIII CATG 6 cut(s) 174, 269, 358, 647, 652, 660
NmuCI GTSAC 2 cut(s) 245, 303
NspI RCATGY 1 cut(s) 174
PagI TCATGA 1 cut(s) 648
PctI GAATGC 2 cut(s) 262, 366
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 76, 401, 505
PflMI CCANNNNNTGG 2 cut(s) 548, 685
PkrI GCNGC 3 cut(s) 100, 466, 469
PspPI GGNCC 2 cut(s) 323, 590
PstI CTGCAG 2 cut(s) 469, 476
PsuI RGATCY 2 cut(s) 660, 675
RsaI GTAC 1 cut(s) 445
RsaNI GTAC 1 cut(s) 444
RseI CAYNNNNRTG 2 cut(s) 206, 359
SatI GCNGC 3 cut(s) 99, 465, 468
Sau3AI GATC 4 cut(s) 65, 376, 660, 675
Sau96I GGNCC 2 cut(s) 323, 590
ScaI AGTACT 1 cut(s) 445
SetI ASST 9 cut(s) 43, 58, 124, 199, 319, 424, 457, 523, 694
SfaNI GCATC 2 cut(s) 208, 514
SfcI CTRYAG 3 cut(s) 426, 465, 472
SinI GGWCC 1 cut(s) 590
SmiMI CAYNNNNRTG 2 cut(s) 206, 359
Sse9I AATT 3 cut(s) 93, 599, 633
SsiI CCGC 1 cut(s) 98
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 3 cut(s) 331, 430, 448
TasI AATT 3 cut(s) 93, 599, 633
TatI WGTACW 1 cut(s) 443
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 3 cut(s) 76, 401, 505
TscAI CASTG 2 cut(s) 553, 613
TseFI GTSAC 2 cut(s) 245, 303
TseI GCWGC 2 cut(s) 464, 467
Tsp45I GTSAC 2 cut(s) 245, 303
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 2 cut(s) 553, 613
Van91I CCANNNNNTGG 2 cut(s) 548, 685
VpaK11BI GGWCC 1 cut(s) 590
XapI RAATTY 1 cut(s) 599
XceI RCATGY 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.