pycom11g00400

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015396
Physical Location & Seq
Reverse (-)
310690 .. 313391
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g00400.6

Sequence Viewer

Length: 897 bp
ATGGGAGACAAAGGTACGCCCAAATCTGGTGTTTGGCCAACCATTAAGCCCTTCGTCAATGGCGGAGCCTCTGGTATGCTTGCTACCTGTGTCATCCAGCCAATCGATATGATCAAGGTGAGAATTCAATTGGGTCAGGGATCAGCTGCCCAGGTCACCAGGACCATGATTAAAGAGGAAGGTGTTGGTGCTTTGTATAAGGGACTCTCTGCTGGACTACTAAGACAAGCTACATATACCACAGCTCGTCTTGGATCATTCAGGATTCTGACAAACAAAGCAATTGAGGCCAATGATGGGAAGCCCCTACCTCTATACCAGAAAGCCTTGTGTGGGCTAACTGCTGGTGCCATTGGAGCATCTGTTGGAAGTCCAGCAGATTTAGCACTCATTCGTATGCAAGCTGATGCTACTTTGCCTGCTGCTCAGCGCCGGAACTACACAAATGCTTTCCATGCTCTCTATCGCATTACTGCAGATGAAGGGGTTTTGGCACTTTGGAAAGGTGCAGGCCCTACTGTAGTTAGAGCAATGGCATTGAACATGGGAATGCTTGCCTCTTATGATCAAAGTGTTGAGTTTTGCAAGGATTCCCTTGGATTTGGTGAAGCTGCTACTATCTTGGGTGCCAGTACCGTTTCAGGGTTTTTCGCTGCTGCTTGCAGTTTGCCCTTTGACTATGTGAAAACCCAAATTCAGAAAATGCAGCCTGATGCCCAGGGGAAGTATCCATACACTGGCTCTTTTGATTGTGCCATGAAAACCCTGAAAGCAGGAGGACCATTGAAATTTTACACTGGGTTTCCGGTATATTGTGTTAGAATTGCGCCCCACGTCATGATGACATGGATTTTCCTCAACCAGATCCAGAAGTTGGAAAAGAAAGTTGGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

299

Amino Acids

31.77

Weight (kDa)

9.5

Isoelectric Point (pI)

21.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19760
fragaria_vesca FvH4_3g45500 FvH4_3g45500
malus_domestica MD03G1004300.v1.1 MD11G1004900.v1.1
prunus_persica Prupe.6G003900_v2.0.a1
pyrus_communis pycom03g00440 pycom11g00400
rosa_chinensis RchiOBHm_Chr5g0083291
rosa_laevigata RLG00000037027
rosa_multiflora Rmu_sc0011792.1_g000009
rosa_roxburghii Rroxscaffold_1G00001200
rosa_rugosa Rorug05G0484100
rosa_samantha Rh5AG533400 Rh5BG560900
rosa_wichuraiana Rw5G049940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 347, 626
AccB7I CCANNNNNTGG 2 cut(s) 737, 874
AciI CCGC 1 cut(s) 63
AclWI GGATC 3 cut(s) 148, 262, 859
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 3 cut(s) 123, 693, 788
AfaI GTAC 2 cut(s) 16, 634
AfiI CCNNNNNNNGG 6 cut(s) 26, 297, 333, 642, 737, 874
AgsI TTSAA 3 cut(s) 128, 541, 787
AjiI CACGTC 1 cut(s) 835
AjnI CCWGG 3 cut(s) 150, 158, 717
AjuI GAANNNNNNNTTGG 1 cut(s) 870
AluBI AGCT 5 cut(s) 146, 230, 245, 404, 611
AluI AGCT 5 cut(s) 146, 230, 245, 404, 611
AlwI GGATC 3 cut(s) 148, 262, 859
AoxI GGCC 3 cut(s) 35, 288, 511
ApeKI GCWGC 6 cut(s) 146, 422, 611, 653, 656, 706
ApoI RAATTY 3 cut(s) 123, 693, 788
AspLEI GCGC 2 cut(s) 432, 829
AspS9I GGNCC 3 cut(s) 162, 512, 779
AsuHPI GGTGA 3 cut(s) 130, 148, 617
AvaII GGWCC 2 cut(s) 162, 779
BalI TGGCCA 1 cut(s) 37
BanI GGYRCC 2 cut(s) 347, 626
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BbvI GCAGC 6 cut(s) 133, 409, 598, 640, 643, 718
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 3 cut(s) 152, 160, 719
BciVI GTATCC 1 cut(s) 738
BclI TGATCA 2 cut(s) 111, 565
BfmI CTRYAG 2 cut(s) 474, 519
BfoI RGCGCY 1 cut(s) 433
BfuI GTATCC 1 cut(s) 738
BisI GCNGC 6 cut(s) 147, 423, 612, 654, 657, 707
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 6 cut(s) 148, 424, 613, 655, 658, 708
Bme1390I CCNGG 3 cut(s) 152, 160, 719
Bme18I GGWCC 2 cut(s) 162, 779
BmgBI CACGTC 1 cut(s) 835
BmgT120I GGNCC 3 cut(s) 162, 512, 779
BmiI GGNNCC 3 cut(s) 67, 349, 628
BmrFI CCNGG 3 cut(s) 152, 160, 719
BmrI ACTGGG 1 cut(s) 807
BmsI GCATC 3 cut(s) 368, 397, 703
BmuI ACTGGG 1 cut(s) 807
Bpu1102I GCTNAGC 1 cut(s) 426
Bsa29I ATCGAT 1 cut(s) 105
BsaJI CCNNGG 4 cut(s) 150, 595, 717, 718
BsaWI WCCGGW 1 cut(s) 805
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 297, 333, 642, 737, 874
Bse1I ACTGG 3 cut(s) 630, 742, 802
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 3 cut(s) 152, 160, 719
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 4 cut(s) 150, 595, 717, 718
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 6 cut(s) 26, 297, 333, 642, 737, 874
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 440
BseNI ACTGG 3 cut(s) 630, 742, 802
BseXI GCAGC 6 cut(s) 133, 409, 598, 640, 643, 718
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 3 cut(s) 37, 290, 513
BshNI GGYRCC 2 cut(s) 347, 626
BshVI ATCGAT 1 cut(s) 105
BsiSI CCGG 2 cut(s) 433, 806
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 6 cut(s) 26, 297, 333, 642, 737, 874
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 3 cut(s) 37, 290, 513
Bsp143I GATC 5 cut(s) 111, 140, 254, 565, 864
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 1 cut(s) 63
BspANI GGCC 3 cut(s) 37, 290, 513
BspCNI CTCAG 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 105
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 3 cut(s) 67, 349, 628
BspMAI CTGCAG 1 cut(s) 478
BspPI GGATC 3 cut(s) 148, 262, 859
BspT107I GGYRCC 2 cut(s) 347, 626
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 3 cut(s) 630, 742, 802
BssECI CCNNGG 4 cut(s) 150, 595, 717, 718
BssMI GATC 5 cut(s) 111, 140, 254, 565, 864
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 3 cut(s) 152, 160, 719
Bst4CI ACNGT 2 cut(s) 520, 637
BstC8I GCNNGC 6 cut(s) 81, 402, 420, 511, 555, 661
BstDEI CTNAG 2 cut(s) 221, 426
BstEII GGTNACC 1 cut(s) 154
BstF5I GGATG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 2 cut(s) 432, 829
BstKTI GATC 5 cut(s) 114, 143, 257, 568, 867
BstMBI GATC 5 cut(s) 111, 140, 254, 565, 864
BstMWI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
BstNI CCWGG 3 cut(s) 152, 160, 719
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 3 cut(s) 150, 158, 717
BstSFI CTRYAG 2 cut(s) 474, 519
BstV1I GCAGC 6 cut(s) 133, 409, 598, 640, 643, 718
BstX2I RGATCY 1 cut(s) 864
BstYI RGATCY 1 cut(s) 864
Bsu15I ATCGAT 1 cut(s) 105
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 3 cut(s) 37, 290, 513
BsuTUI ATCGAT 1 cut(s) 105
BtrI CACGTC 1 cut(s) 835
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 735, 795
Cac8I GCNNGC 6 cut(s) 81, 402, 420, 511, 555, 661
CciI TCATGA 1 cut(s) 837
CfoI GCGC 2 cut(s) 432, 829
Cfr13I GGNCC 3 cut(s) 162, 512, 779
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 2 cut(s) 15, 633
CviAII CATG 6 cut(s) 166, 455, 544, 757, 838, 846
CviQI GTAC 2 cut(s) 15, 633
DdeI CTNAG 2 cut(s) 221, 426
DpnI GATC 5 cut(s) 113, 142, 256, 567, 866
DpnII GATC 5 cut(s) 111, 140, 254, 565, 864
EaeI YGGCCR 1 cut(s) 35
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 595
Eco47I GGWCC 2 cut(s) 162, 779
Eco91I GGTNACC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 512
EcoO65I GGTNACC 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 3 cut(s) 150, 158, 717
EcoT14I CCWWGG 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 595
FaeI CATG 6 cut(s) 169, 458, 547, 760, 841, 849
FaqI GGGAC 1 cut(s) 216
FatI CATG 6 cut(s) 165, 454, 543, 756, 837, 845
FbaI TGATCA 2 cut(s) 111, 565
Fnu4HI GCNGC 6 cut(s) 147, 423, 612, 654, 657, 707
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 6 cut(s) 147, 423, 612, 654, 657, 707
GlaI GCGC 2 cut(s) 431, 828
GluI GCNGC 6 cut(s) 147, 423, 612, 654, 657, 707
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 3 cut(s) 37, 290, 513
HapII CCGG 2 cut(s) 433, 806
HhaI GCGC 2 cut(s) 432, 829
Hin1II CATG 6 cut(s) 169, 458, 547, 760, 841, 849
Hin6I GCGC 2 cut(s) 430, 827
HinP1I GCGC 2 cut(s) 430, 827
HinfI GANTC 3 cut(s) 204, 265, 590
HpaII CCGG 2 cut(s) 433, 806
HphI GGTGA 3 cut(s) 130, 148, 617
Hpy188I TCNGA 2 cut(s) 270, 699
Hpy188III TCNNGA 3 cut(s) 262, 838, 868
HpyAV CCTTC 3 cut(s) 61, 173, 476
HpyCH4III ACNGT 2 cut(s) 520, 637
HpyCH4IV ACGT 1 cut(s) 834
HpyCH4V TGCA 6 cut(s) 400, 476, 509, 585, 663, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
HpyF3I CTNAG 2 cut(s) 221, 426
HpySE526I ACGT 1 cut(s) 834
Hsp92II CATG 6 cut(s) 169, 458, 547, 760, 841, 849
HspAI GCGC 2 cut(s) 430, 827
Ksp22I TGATCA 2 cut(s) 111, 565
Kzo9I GATC 5 cut(s) 111, 140, 254, 565, 864
LmnI GCTCC 2 cut(s) 65, 356
Lsp1109I GCAGC 6 cut(s) 133, 409, 598, 640, 643, 718
LweI GCATC 3 cut(s) 368, 397, 703
MaeII ACGT 1 cut(s) 834
MaeIII GTNAC 1 cut(s) 154
MalI GATC 5 cut(s) 113, 142, 256, 567, 866
MboI GATC 5 cut(s) 111, 140, 254, 565, 864
MfeI CAATTG 2 cut(s) 128, 282
MflI RGATCY 1 cut(s) 864
MlsI TGGCCA 1 cut(s) 37
MluCI AATT 6 cut(s) 123, 128, 282, 693, 788, 822
MluNI TGGCCA 1 cut(s) 37
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 2 cut(s) 346, 855
MnlI CCTC 7 cut(s) 79, 169, 280, 321, 568, 770, 866
Mox20I TGGCCA 1 cut(s) 37
MscI TGGCCA 1 cut(s) 37
MseI TTAA 2 cut(s) 45, 171
MslI CAYNNNNRTG 2 cut(s) 395, 548
Msp20I TGGCCA 1 cut(s) 37
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 433, 806
MspR9I CCNGG 3 cut(s) 152, 160, 719
MunI CAATTG 2 cut(s) 128, 282
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 3 cut(s) 152, 160, 719
MwoI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
NdeII GATC 5 cut(s) 111, 140, 254, 565, 864
NlaIII CATG 6 cut(s) 169, 458, 547, 760, 841, 849
NlaIV GGNNCC 3 cut(s) 67, 349, 628
NmuCI GTSAC 1 cut(s) 154
PagI TCATGA 1 cut(s) 837
PasI CCCWGGG 1 cut(s) 718
PctI GAATGC 1 cut(s) 555
PfeI GAWTC 2 cut(s) 265, 590
PflMI CCANNNNNTGG 2 cut(s) 737, 874
PkrI GCNGC 6 cut(s) 148, 424, 613, 655, 658, 708
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
Psp6I CCWGG 3 cut(s) 150, 158, 717
PspEI GGTNACC 1 cut(s) 154
PspGI CCWGG 3 cut(s) 150, 158, 717
PspN4I GGNNCC 3 cut(s) 67, 349, 628
PspPI GGNCC 3 cut(s) 162, 512, 779
PstI CTGCAG 1 cut(s) 478
PsuI RGATCY 1 cut(s) 864
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 2 cut(s) 16, 634
RsaNI GTAC 2 cut(s) 15, 633
RseI CAYNNNNRTG 2 cut(s) 395, 548
SaqAI TTAA 2 cut(s) 45, 171
SatI GCNGC 6 cut(s) 147, 423, 612, 654, 657, 707
Sau3AI GATC 5 cut(s) 111, 140, 254, 565, 864
Sau96I GGNCC 3 cut(s) 162, 512, 779
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 3 cut(s) 152, 160, 719
SfaNI GCATC 3 cut(s) 368, 397, 703
SfcI CTRYAG 2 cut(s) 474, 519
SinI GGWCC 2 cut(s) 162, 779
SmiMI CAYNNNNRTG 2 cut(s) 395, 548
Sse9I AATT 6 cut(s) 123, 128, 282, 693, 788, 822
SsiI CCGC 1 cut(s) 63
StyD4I CCNGG 3 cut(s) 150, 158, 717
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 2 cut(s) 520, 637
TaiI ACGT 1 cut(s) 837
TaqI TCGA 1 cut(s) 105
TasI AATT 6 cut(s) 123, 128, 282, 693, 788, 822
TfiI GAWTC 2 cut(s) 265, 590
Tru1I TTAA 2 cut(s) 45, 171
Tru9I TTAA 2 cut(s) 45, 171
TscAI CASTG 2 cut(s) 742, 802
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 6 cut(s) 146, 422, 611, 653, 656, 706
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 495, 773
TspRI CASTG 2 cut(s) 742, 802
Van91I CCANNNNNTGG 2 cut(s) 737, 874
VpaK11BI GGWCC 2 cut(s) 162, 779
XapI RAATTY 3 cut(s) 123, 693, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.