FvH4_3g45500

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015396
Physical Location & Seq
Forward (+)
37719350 .. 37722918
3569 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45500.t2

Sequence Viewer

Length: 897 bp
ATGGGAGACAAGGATAAGCCCAAGTCTGGTGTCTGGCCAACTGTTAAGCCCTTCGTCAATGGCGGAGCCTCTGGTATGCTCGCTACCTGCGTCATCCAACCCATCGATATGATCAAGGTGAGAATTCAATTGGGTCAGGGATCAGCTGGACAAGTTGCCAGGACCATGATCAAGGAGGAGGGTTTTGGTTCATTGTATAAGGGTCTTTCTGCCGGACTTCTGAGACAAGCTACATACACCACAGCTCGTCTTGGATCATTCAGGATTCTGACGAACAAAGCAATTGAGGCTAATGATGGGAAGCCCTTGCCCCTGTACCAGAAAGCCTTGTGTGGGCTAACTGCTGGTGCTATTGGAGCAACTGTTGGAAGTCCAGCAGATTTAGCTCTCATTCGTATGCAGGCAGATGCCACTTTACCCCTTGCTCAGCGCCGTAACTATACAAATGCTTTCCATGCACTTGGTCGTATTGTTACAGATGAAGGGGTTTTGTCACTTTGGAAGGGGGCAGGACCCACTGTTGTAAGAGCAATGGCATTGAACATGGGAATGCTTGCCTCTTATGACCAAGGTGTTGAGTTTTTCAAGGATACCCTTGGTTGTGGTGAAGCTACTACAGTATTGGGTGCAAGTTCTGTTTCAGGATTTTTTGCTGCAGCCTGCAGTTTGCCCTTTGATTACGTGAAAACACAGATTCAGAAAATGCAACCTGATGCTGAGGGGAAGTTTCCATACACTGGGTCTTTTGATTGTGCCATGAAAACCTTGAAAGCAGGAGGACCATTGAAATTTTACACTGGGTTTCCAGTATATTGTGTTAGAATTGCCCCCCATGTCATGATGACATGGATCTTCCTCAATCAGCTCCAGAAGTTGGAAAAGAAAGTTGGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

299

Amino Acids

31.82

Weight (kDa)

9.45

Isoelectric Point (pI)

20.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 47 - 142 1.5e-20 Mitochondrial carrier protein
Mito_carr PF00153 152 - 237 2.6e-14 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19760
fragaria_vesca FvH4_3g45500 FvH4_3g45500
malus_domestica MD03G1004300.v1.1 MD11G1004900.v1.1
prunus_persica Prupe.6G003900_v2.0.a1
pyrus_communis pycom03g00440 pycom11g00400
rosa_chinensis RchiOBHm_Chr5g0083291
rosa_laevigata RLG00000037027
rosa_multiflora Rmu_sc0011792.1_g000009
rosa_roxburghii Rroxscaffold_1G00001200
rosa_rugosa Rorug05G0484100
rosa_samantha Rh5AG533400 Rh5BG560900
rosa_wichuraiana Rw5G049940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 2 cut(s) 737, 874
AciI CCGC 1 cut(s) 63
AclWI GGATC 3 cut(s) 148, 262, 857
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 2 cut(s) 123, 788
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 4 cut(s) 26, 333, 737, 874
AgsI TTSAA 5 cut(s) 128, 541, 586, 769, 787
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 1 cut(s) 870
AluBI AGCT 6 cut(s) 146, 230, 245, 386, 611, 865
AluI AGCT 6 cut(s) 146, 230, 245, 386, 611, 865
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 3 cut(s) 148, 262, 857
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 653, 656
ApoI RAATTY 2 cut(s) 123, 788
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 3 cut(s) 162, 512, 779
AsuHPI GGTGA 2 cut(s) 130, 617
AvaII GGWCC 3 cut(s) 162, 512, 779
BalI TGGCCA 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 640, 668
BccI CCATC 2 cut(s) 110, 290
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 1 cut(s) 160
BciVI GTATCC 1 cut(s) 583
BclI TGATCA 2 cut(s) 111, 168
BcoDI GTCTC 1 cut(s) 217
BfmI CTRYAG 3 cut(s) 615, 654, 661
BfoI RGCGCY 1 cut(s) 433
BfuAI ACCTGC 1 cut(s) 95
BfuI GTATCC 1 cut(s) 583
BisI GCNGC 2 cut(s) 654, 657
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 2 cut(s) 655, 658
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 3 cut(s) 162, 512, 779
BmgT120I GGNCC 3 cut(s) 162, 512, 779
BmiI GGNNCC 2 cut(s) 67, 514
BmrFI CCNGG 1 cut(s) 160
BmrI ACTGGG 2 cut(s) 747, 807
BmsI GCATC 2 cut(s) 397, 703
BmuI ACTGGG 2 cut(s) 747, 807
BpmI CTGGAG 1 cut(s) 851
Bpu10I CCTNAGC 1 cut(s) 717
Bpu1102I GCTNAGC 1 cut(s) 426
Bsa29I ATCGAT 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 682
BsaJI CCNNGG 2 cut(s) 568, 595
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 333, 737, 874
Bse1I ACTGG 3 cut(s) 742, 802, 806
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 1 cut(s) 160
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 568, 595
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 4 cut(s) 26, 333, 737, 874
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 3 cut(s) 212, 440, 708
BseNI ACTGG 3 cut(s) 742, 802, 806
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 640, 668
BshFI GGCC 1 cut(s) 37
BshVI ATCGAT 1 cut(s) 105
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 4 cut(s) 26, 333, 737, 874
BsmAI GTCTC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 5 cut(s) 111, 140, 168, 254, 849
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 3 cut(s) 213, 439, 709
BspDI ATCGAT 1 cut(s) 105
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 2 cut(s) 67, 514
BspMAI CTGCAG 2 cut(s) 658, 665
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 3 cut(s) 148, 262, 857
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 3 cut(s) 742, 802, 806
BssECI CCNNGG 2 cut(s) 568, 595
BssMI GATC 5 cut(s) 111, 140, 168, 254, 849
BssT1I CCWWGG 2 cut(s) 568, 595
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 4 cut(s) 43, 364, 520, 619
BstBAI YACGTR 1 cut(s) 682
BstC8I GCNNGC 4 cut(s) 81, 402, 555, 661
BstDEI CTNAG 3 cut(s) 221, 426, 717
BstF5I GGATG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 5 cut(s) 114, 143, 171, 257, 852
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 5 cut(s) 111, 140, 168, 254, 849
BstMWI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 3 cut(s) 615, 654, 661
BstV1I GCAGC 2 cut(s) 640, 668
BstX2I RGATCY 1 cut(s) 849
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 849
Bsu15I ATCGAT 1 cut(s) 105
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 1 cut(s) 37
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 3 cut(s) 516, 735, 795
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 4 cut(s) 81, 402, 555, 661
CciI TCATGA 1 cut(s) 837
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 162, 512, 779
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 316
CviAII CATG 7 cut(s) 166, 455, 544, 757, 833, 838, 846
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 3 cut(s) 221, 426, 717
DpnI GATC 5 cut(s) 113, 142, 170, 256, 851
DpnII GATC 5 cut(s) 111, 140, 168, 254, 849
EaeI YGGCCR 1 cut(s) 35
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 568, 595
Eco47I GGWCC 3 cut(s) 162, 512, 779
EcoO109I RGGNCCY 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 2 cut(s) 568, 595
ErhI CCWWGG 2 cut(s) 568, 595
FaeI CATG 7 cut(s) 169, 458, 547, 760, 836, 841, 849
FatI CATG 7 cut(s) 165, 454, 543, 756, 832, 837, 845
FbaI TGATCA 2 cut(s) 111, 168
Fnu4HI GCNGC 2 cut(s) 654, 657
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 654, 657
GlaI GCGC 1 cut(s) 431
GluI GCNGC 2 cut(s) 654, 657
GsuI CTGGAG 1 cut(s) 851
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 1 cut(s) 37
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 432
Hin1II CATG 7 cut(s) 169, 458, 547, 760, 836, 841, 849
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 2 cut(s) 265, 694
HpaII CCGG 1 cut(s) 213
HphI GGTGA 2 cut(s) 130, 617
Hpy188I TCNGA 3 cut(s) 222, 270, 699
Hpy188III TCNNGA 4 cut(s) 262, 642, 838, 868
HpyAV CCTTC 3 cut(s) 61, 476, 496
HpyCH4III ACNGT 4 cut(s) 43, 364, 520, 619
HpyCH4IV ACGT 1 cut(s) 681
HpyCH4V TGCA 6 cut(s) 400, 458, 629, 656, 663, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
HpyF3I CTNAG 3 cut(s) 221, 426, 717
HpySE526I ACGT 1 cut(s) 681
Hsp92II CATG 7 cut(s) 169, 458, 547, 760, 836, 841, 849
HspAI GCGC 1 cut(s) 430
Ksp22I TGATCA 2 cut(s) 111, 168
Kzo9I GATC 5 cut(s) 111, 140, 168, 254, 849
LmnI GCTCC 3 cut(s) 65, 356, 870
Lsp1109I GCAGC 2 cut(s) 640, 668
LweI GCATC 2 cut(s) 397, 703
MaeII ACGT 1 cut(s) 681
MaeIII GTNAC 3 cut(s) 434, 472, 492
MalI GATC 5 cut(s) 113, 142, 170, 256, 851
MboI GATC 5 cut(s) 111, 140, 168, 254, 849
MboII GAAGA 1 cut(s) 844
MfeI CAATTG 2 cut(s) 128, 282
MflI RGATCY 1 cut(s) 849
MlsI TGGCCA 1 cut(s) 37
MluCI AATT 5 cut(s) 123, 128, 282, 788, 822
MluNI TGGCCA 1 cut(s) 37
MmeI TCCRAC 3 cut(s) 121, 346, 855
MnlI CCTC 8 cut(s) 79, 169, 172, 280, 568, 712, 770, 866
Mox20I TGGCCA 1 cut(s) 37
MscI TGGCCA 1 cut(s) 37
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 3 cut(s) 107, 395, 548
Msp20I TGGCCA 1 cut(s) 37
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 160
MunI CAATTG 2 cut(s) 128, 282
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
NdeII GATC 5 cut(s) 111, 140, 168, 254, 849
NlaIII CATG 7 cut(s) 169, 458, 547, 760, 836, 841, 849
NlaIV GGNNCC 2 cut(s) 67, 514
NmuCI GTSAC 1 cut(s) 492
PagI TCATGA 1 cut(s) 837
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 555
PfeI GAWTC 2 cut(s) 265, 694
PflMI CCANNNNNTGG 2 cut(s) 737, 874
PkrI GCNGC 2 cut(s) 655, 658
Ppu21I YACGTR 1 cut(s) 682
PpuMI RGGWCCY 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 67, 514
PspPI GGNCC 3 cut(s) 162, 512, 779
PspPPI RGGWCCY 1 cut(s) 512
PstI CTGCAG 2 cut(s) 658, 665
PsuI RGATCY 1 cut(s) 849
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 3 cut(s) 107, 395, 548
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 654, 657
Sau3AI GATC 5 cut(s) 111, 140, 168, 254, 849
Sau96I GGNCC 3 cut(s) 162, 512, 779
ScrFI CCNGG 1 cut(s) 160
SfaNI GCATC 2 cut(s) 397, 703
SfcI CTRYAG 3 cut(s) 615, 654, 661
SinI GGWCC 3 cut(s) 162, 512, 779
SmiMI CAYNNNNRTG 3 cut(s) 107, 395, 548
Sse9I AATT 5 cut(s) 123, 128, 282, 788, 822
SsiI CCGC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 2 cut(s) 568, 595
TaaI ACNGT 4 cut(s) 43, 364, 520, 619
TaiI ACGT 1 cut(s) 684
TaqI TCGA 1 cut(s) 105
TasI AATT 5 cut(s) 123, 128, 282, 788, 822
TfiI GAWTC 2 cut(s) 265, 694
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 3 cut(s) 523, 742, 802
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 2 cut(s) 653, 656
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 3 cut(s) 180, 495, 773
TspRI CASTG 3 cut(s) 523, 742, 802
Van91I CCANNNNNTGG 2 cut(s) 737, 874
VpaK11BI GGWCC 3 cut(s) 162, 512, 779
XapI RAATTY 2 cut(s) 123, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.