Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015396

Physical Location & Seq

Genomic Coordinates Reverse (-)

335673 .. 339016

Gene Structure 3344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1004300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGAGACAAAGGTACGCCCAAATCTGGTGTTTGGCCCACCGTTAAGCCCTTCGTCAATGGCGGAGCCTCTGGTATGCTTGCTACCTGTGTCATCCAACCGATTGATATGATCAAGGTGAGAATTCAATTGGGTCAGGGATCAGCTGCCCAGGTCACCAGGACCATGATTAAAGAGGAAGGCTTTGGTGCTTTGTATAAGGGACTCTCTGCTGGGCTACTAAGACAAGCTACATATACCACAGCTCGTCTTGGATCATTTAGGATTCTGACAAACAAAGCAATTGAGGCCAATGATGGGAAGCCTCTACCTCTATACCAGAAAGCCTTGTGTGGGCTAACTGCTGGTGCCATTGGAGCATCTGTTGGAAGTCCAGCAGATTTAGCACTCATTCGTATGCAAGCTGATGCTACTTTGCCTGCTGCTCAGCGCCGTAACTACACAAATGCTTTCCATGCTCTATATCGTATTACTGCAGATGAAGGGGTTTTGGCACTTTGGAAAGGTGCAGGCCCTACTGTAGTTAGAGCAATGGCGTTGAACATGGGAATGCTTGCCTCTTATGATCAAAGTGTTGAATTTTTCAAGGATTCCCTTGGATTTGGTGAAGGTGCTACTGTCTTGGTTATTCTATTTGAATGTGCCAGTACCGTTTCAGGGTTTTTCGCTGCCGCTTGCAGTTTGCCCTTTGACTATGTGAAAACCCAAATTCAGAAAATGCAGCCTGATGCTGAGGGAAAGTATCCATACACTGGCTCTTTTGATTGTGCCATGAAAACCTTGAAAGCAGGAGGACCATTGAAATTTTACACTGGGTTTCCTGTATATTGTGTTAGAATTGCCCCCCATGTCATGATGACATGGATTTTCCTCAACCAGATCCAGAAGTTGGAAAAGAACTTTGGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

304

Amino Acids

32.5

Weight (kDa)

9.3

Isoelectric Point (pI)

23.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	14 - 90	1.9e-17	Mitochondrial carrier protein
Mito_carr	PF00153	102 - 197	1.6e-20	Mitochondrial carrier protein
Mito_carr	PF00153	215 - 297	3.4e-14	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19760
fragaria_vesca	FvH4_3g45500 FvH4_3g45500
malus_domestica	MD03G1004300.v1.1 MD11G1004900.v1.1
prunus_persica	Prupe.6G003900_v2.0.a1
pyrus_communis	pycom03g00440 pycom11g00400
rosa_chinensis	RchiOBHm_Chr5g0083291
rosa_laevigata	RLG00000037027
rosa_multiflora	Rmu_sc0011792.1_g000009
rosa_roxburghii	Rroxscaffold_1G00001200
rosa_rugosa	Rorug05G0484100
rosa_samantha	Rh5AG533400 Rh5BG560900
rosa_wichuraiana	Rw5G049940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	2 cut(s)	752, 889
AciI	CCGC	2 cut(s)	63, 672
AclWI	GGATC	3 cut(s)	148, 262, 874
AcsI	RAATTY	4 cut(s)	123, 578, 708, 803
AfaI	GTAC	2 cut(s)	16, 649
AfiI	CCNNNNNNNGG	6 cut(s)	26, 297, 333, 657, 752, 889
AgsI	TTSAA	7 cut(s)	128, 541, 578, 586, 638, 784, 802
AjnI	CCWGG	2 cut(s)	150, 158
AjuI	GAANNNNNNNTTGG	1 cut(s)	885
AluBI	AGCT	4 cut(s)	146, 230, 245, 404
AluI	AGCT	4 cut(s)	146, 230, 245, 404
AlwI	GGATC	3 cut(s)	148, 262, 874
AoxI	GGCC	3 cut(s)	35, 288, 511
ApeKI	GCWGC	4 cut(s)	146, 422, 668, 721
ApoI	RAATTY	4 cut(s)	123, 578, 708, 803
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	4 cut(s)	36, 162, 512, 794
AsuHPI	GGTGA	3 cut(s)	130, 148, 617
AvaII	GGWCC	2 cut(s)	162, 794
BanI	GGYRCC	1 cut(s)	347
BbvCI	CCTCAGC	1 cut(s)	732
BbvI	GCAGC	4 cut(s)	133, 409, 655, 733
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	2 cut(s)	152, 160
BciVI	GTATCC	1 cut(s)	753
BclI	TGATCA	2 cut(s)	111, 565
BfmI	CTRYAG	2 cut(s)	474, 519
BfoI	RGCGCY	1 cut(s)	433
BfuI	GTATCC	1 cut(s)	753
BisI	GCNGC	5 cut(s)	147, 423, 669, 672, 722
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	5 cut(s)	148, 424, 670, 673, 723
Bme1390I	CCNGG	2 cut(s)	152, 160
Bme18I	GGWCC	2 cut(s)	162, 794
BmgT120I	GGNCC	4 cut(s)	36, 162, 512, 794
BmiI	GGNNCC	2 cut(s)	67, 349
BmrFI	CCNGG	2 cut(s)	152, 160
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	3 cut(s)	368, 397, 718
BmuI	ACTGGG	1 cut(s)	822
Bpu10I	CCTNAGC	1 cut(s)	732
Bpu1102I	GCTNAGC	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	150, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 297, 333, 657, 752, 889
Bse1I	ACTGG	3 cut(s)	645, 757, 817
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	152, 160
BseDI	CCNNGG	2 cut(s)	150, 595
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	6 cut(s)	26, 297, 333, 657, 752, 889
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	2 cut(s)	440, 723
BseNI	ACTGG	3 cut(s)	645, 757, 817
BseXI	GCAGC	4 cut(s)	133, 409, 655, 733
BseYI	CCCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	37, 290, 513
BshNI	GGYRCC	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	6 cut(s)	26, 297, 333, 657, 752, 889
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	3 cut(s)	37, 290, 513
Bsp143I	GATC	5 cut(s)	111, 140, 254, 565, 879
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	2 cut(s)	63, 672
BspANI	GGCC	3 cut(s)	37, 290, 513
BspCNI	CTCAG	2 cut(s)	439, 724
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	2 cut(s)	67, 349
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	3 cut(s)	148, 262, 874
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	3 cut(s)	645, 757, 817
BssECI	CCNNGG	2 cut(s)	150, 595
BssMI	GATC	5 cut(s)	111, 140, 254, 565, 879
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	152, 160
Bst4CI	ACNGT	4 cut(s)	43, 520, 619, 652
BstC8I	GCNNGC	6 cut(s)	81, 402, 420, 511, 555, 676
BstDEI	CTNAG	3 cut(s)	221, 426, 732
BstEII	GGTNACC	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	5 cut(s)	114, 143, 257, 568, 882
BstMBI	GATC	5 cut(s)	111, 140, 254, 565, 879
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 356, 383, 455
BstNI	CCWGG	2 cut(s)	152, 160
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	150, 158
BstSFI	CTRYAG	2 cut(s)	474, 519
BstV1I	GCAGC	4 cut(s)	133, 409, 655, 733
BstX2I	RGATCY	1 cut(s)	879
BstYI	RGATCY	1 cut(s)	879
BsuI	GTATCC	1 cut(s)	753
BsuRI	GGCC	3 cut(s)	37, 290, 513
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	750, 810
Cac8I	GCNNGC	6 cut(s)	81, 402, 420, 511, 555, 676
CciI	TCATGA	1 cut(s)	852
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	4 cut(s)	36, 162, 512, 794
Csp6I	GTAC	2 cut(s)	15, 648
CviAII	CATG	7 cut(s)	166, 455, 544, 772, 848, 853, 861
CviQI	GTAC	2 cut(s)	15, 648
DdeI	CTNAG	3 cut(s)	221, 426, 732
DpnI	GATC	5 cut(s)	113, 142, 256, 567, 881
DpnII	GATC	5 cut(s)	111, 140, 254, 565, 879
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	595
Eco47I	GGWCC	2 cut(s)	162, 794
Eco91I	GGTNACC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	512
EcoO65I	GGTNACC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	150, 158
EcoT14I	CCWWGG	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	7 cut(s)	169, 458, 547, 775, 851, 856, 864
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	7 cut(s)	165, 454, 543, 771, 847, 852, 860
FbaI	TGATCA	2 cut(s)	111, 565
Fnu4HI	GCNGC	5 cut(s)	147, 423, 669, 672, 722
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	5 cut(s)	147, 423, 669, 672, 722
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	5 cut(s)	147, 423, 669, 672, 722
GsaI	CCCAGC	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	3 cut(s)	37, 290, 513
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	7 cut(s)	169, 458, 547, 775, 851, 856, 864
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	204, 265, 590
HphI	GGTGA	3 cut(s)	130, 148, 617
Hpy188I	TCNGA	2 cut(s)	270, 714
Hpy188III	TCNNGA	2 cut(s)	853, 883
HpyAV	CCTTC	4 cut(s)	61, 173, 476, 602
HpyCH4III	ACNGT	4 cut(s)	43, 520, 619, 652
HpyCH4V	TGCA	5 cut(s)	400, 476, 509, 678, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 356, 383, 455
HpyF3I	CTNAG	3 cut(s)	221, 426, 732
Hsp92II	CATG	7 cut(s)	169, 458, 547, 775, 851, 856, 864
HspAI	GCGC	1 cut(s)	430
Ksp22I	TGATCA	2 cut(s)	111, 565
Kzo9I	GATC	5 cut(s)	111, 140, 254, 565, 879
LmnI	GCTCC	2 cut(s)	65, 356
Lsp1109I	GCAGC	4 cut(s)	133, 409, 655, 733
LweI	GCATC	3 cut(s)	368, 397, 718
MaeIII	GTNAC	2 cut(s)	154, 434
MalI	GATC	5 cut(s)	113, 142, 256, 567, 881
MboI	GATC	5 cut(s)	111, 140, 254, 565, 879
MfeI	CAATTG	2 cut(s)	128, 282
MflI	RGATCY	1 cut(s)	879
MluCI	AATT	7 cut(s)	123, 128, 282, 578, 708, 803, 837
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	3 cut(s)	121, 346, 870
MnlI	CCTC	9 cut(s)	79, 169, 280, 315, 321, 568, 727, 785, 881
MseI	TTAA	2 cut(s)	45, 171
MslI	CAYNNNNRTG	2 cut(s)	395, 548
MspA1I	CMGCKG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	152, 160
MunI	CAATTG	2 cut(s)	128, 282
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	2 cut(s)	152, 160
MwoI	GCNNNNNNNGC	4 cut(s)	287, 356, 383, 455
NdeII	GATC	5 cut(s)	111, 140, 254, 565, 879
NlaIII	CATG	7 cut(s)	169, 458, 547, 775, 851, 856, 864
NlaIV	GGNNCC	2 cut(s)	67, 349
NmuCI	GTSAC	1 cut(s)	154
PagI	TCATGA	1 cut(s)	852
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	265, 590
PflMI	CCANNNNNTGG	2 cut(s)	752, 889
PkrI	GCNGC	5 cut(s)	148, 424, 670, 673, 723
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	150, 158
PspEI	GGTNACC	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	212
PspGI	CCWGG	2 cut(s)	150, 158
PspN4I	GGNNCC	2 cut(s)	67, 349
PspPI	GGNCC	4 cut(s)	36, 162, 512, 794
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	879
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	16, 649
RsaNI	GTAC	2 cut(s)	15, 648
RseI	CAYNNNNRTG	2 cut(s)	395, 548
SaqAI	TTAA	2 cut(s)	45, 171
SatI	GCNGC	5 cut(s)	147, 423, 669, 672, 722
Sau3AI	GATC	5 cut(s)	111, 140, 254, 565, 879
Sau96I	GGNCC	4 cut(s)	36, 162, 512, 794
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	2 cut(s)	152, 160
SfaNI	GCATC	3 cut(s)	368, 397, 718
SfcI	CTRYAG	2 cut(s)	474, 519
SinI	GGWCC	2 cut(s)	162, 794
SmiMI	CAYNNNNRTG	2 cut(s)	395, 548
Sse9I	AATT	7 cut(s)	123, 128, 282, 578, 708, 803, 837
SsiI	CCGC	2 cut(s)	63, 672
StyD4I	CCNGG	2 cut(s)	150, 158
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	4 cut(s)	43, 520, 619, 652
TasI	AATT	7 cut(s)	123, 128, 282, 578, 708, 803, 837
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	2 cut(s)	265, 590
Tru1I	TTAA	2 cut(s)	45, 171
Tru9I	TTAA	2 cut(s)	45, 171
TscAI	CASTG	2 cut(s)	757, 817
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	4 cut(s)	146, 422, 668, 721
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	495, 788
TspRI	CASTG	2 cut(s)	757, 817
Van91I	CCANNNNNTGG	2 cut(s)	752, 889
VpaK11BI	GGWCC	2 cut(s)	162, 794
XapI	RAATTY	4 cut(s)	123, 578, 708, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.