Rh5BG560900

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015396
Physical Location & Seq
Forward (+)
88965379 .. 88968733
3355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG560900.1

Sequence Viewer

Length: 897 bp
ATGGGAGACAAGGATAAGCTCAAGACTGGTGTCTGGCCAACCGTTAAGCCCTTCATCAATGGCGGAGCCTCTGGTATGCTCGCTACCTGCGTCATCCAACCCATCGATATGATCAAGGTGAGAATTCAATTGGGTCAGGGCTCAGCTGGACAAGTTGCCAGGACCATGATCAAGGAGGAGGGTTTTGGTTCATTGTATAAGGGTCTCTCTGCTGGACTACTAAGACAAGCTACATATACCACAGCTCGTCTTGGATCATTCAGGATTCTGACAAACAAAGCAATTGCGGCCAATGATGGGAAGCCCCTACCTCTATACCAGAAAGCCTTGTGTGGGCTAACTGCTGGTGCTATTGGAGCATCTGTTGGAAGTCCAGCAGATTTAGCTCTCATTCGTATGCAGGCAGATGCCACTTTACCCCTTGCTCAGCGCCGCCACTATAAAAATGCTTTCCATGCTCTTGGTCGCATTGTTGCAGATGAAGGGGTTTTGTCACTTTGGAAAGGTGCAGGCCCTACTGTGGTAAGAGCAATGGCATTGAACATGGGAATGCTTGCCTCTTATGATCAAAGTGTTGAGTTTTTCAAGGATTCCCTTGGTTGTGGTGAAGCTACTACAGTATTGGGTGCAAGTACTGTTTCAGGTTTTTTTGCTGCAGCCTGCAGTTTGCCCTTTGATTATGTGAAAACCCAGATTCAGAAAATGCAACCTGATGCTGAGGGGAAGTATCCATACACTGGGTCTTTTGATTGTGCCGTGAAAACCCTGAAAGCAGGAGGACCATTGAAATTTTACACTGGGTTTCCGGTATATTGTGTTAGAATTGCCCCCCATGTCATGATGACATGGATCTTCCTCAACCAGATCCAGAAGTTGGAAGCTAAAGCTGGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

298

Amino Acids

31.74

Weight (kDa)

9.5

Isoelectric Point (pI)

22.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 14 - 90 2.7e-17 Mitochondrial carrier protein
Mito_carr PF00153 102 - 197 3.5e-20 Mitochondrial carrier protein
Mito_carr PF00153 208 - 292 2.2e-14 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19760
fragaria_vesca FvH4_3g45500 FvH4_3g45500
malus_domestica MD03G1004300.v1.1 MD11G1004900.v1.1
prunus_persica Prupe.6G003900_v2.0.a1
pyrus_communis pycom03g00440 pycom11g00400
rosa_chinensis RchiOBHm_Chr5g0083291
rosa_laevigata RLG00000037027
rosa_multiflora Rmu_sc0011792.1_g000009
rosa_roxburghii Rroxscaffold_1G00001200
rosa_rugosa Rorug05G0484100
rosa_samantha Rh5AG533400 Rh5BG560900
rosa_wichuraiana Rw5G049940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 2 cut(s) 737, 874
AciI CCGC 3 cut(s) 63, 287, 433
AclWI GGATC 3 cut(s) 262, 857, 859
AcoI YGGCCR 2 cut(s) 35, 288
AcsI RAATTY 2 cut(s) 123, 788
AfaI GTAC 1 cut(s) 634
AfiI CCNNNNNNNGG 5 cut(s) 297, 333, 520, 737, 874
AgsI TTSAA 4 cut(s) 128, 541, 586, 787
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 8 cut(s) 19, 146, 230, 245, 386, 611, 881, 887
AluI AGCT 8 cut(s) 19, 146, 230, 245, 386, 611, 881, 887
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 3 cut(s) 262, 857, 859
AoxI GGCC 3 cut(s) 35, 288, 511
ApeKI GCWGC 2 cut(s) 653, 656
ApoI RAATTY 2 cut(s) 123, 788
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 3 cut(s) 162, 512, 779
AsuHPI GGTGA 2 cut(s) 130, 617
AvaII GGWCC 2 cut(s) 162, 779
BalI TGGCCA 1 cut(s) 37
BanII GRGCYC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 640, 668
BccI CCATC 2 cut(s) 110, 290
BceAI ACGGC 1 cut(s) 740
BciT130I CCWGG 1 cut(s) 160
BciVI GTATCC 1 cut(s) 738
BclI TGATCA 3 cut(s) 111, 168, 565
BcoDI GTCTC 1 cut(s) 209
BfmI CTRYAG 3 cut(s) 615, 654, 661
BfoI RGCGCY 1 cut(s) 433
BfuAI ACCTGC 1 cut(s) 95
BfuI GTATCC 1 cut(s) 738
BisI GCNGC 4 cut(s) 288, 433, 654, 657
BlpI GCTNAGC 2 cut(s) 142, 426
BlsI GCNGC 4 cut(s) 289, 434, 655, 658
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 2 cut(s) 162, 779
BmgT120I GGNCC 3 cut(s) 162, 512, 779
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 160
BmrI ACTGGG 2 cut(s) 747, 807
BmsI GCATC 3 cut(s) 368, 397, 703
BmuI ACTGGG 2 cut(s) 747, 807
BoxI GACNNNNGTC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 717
Bpu1102I GCTNAGC 2 cut(s) 142, 426
BpuEI CTTGAG 1 cut(s) 5
Bsa29I ATCGAT 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 595
BsaWI WCCGGW 1 cut(s) 805
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 5 cut(s) 297, 333, 520, 737, 874
Bse1I ACTGG 3 cut(s) 31, 742, 802
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 1 cut(s) 160
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 595
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 5 cut(s) 297, 333, 520, 737, 874
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 3 cut(s) 156, 440, 708
BseNI ACTGG 3 cut(s) 31, 742, 802
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 640, 668
BseYI CCCAGC 1 cut(s) 887
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 3 cut(s) 37, 290, 513
BshVI ATCGAT 1 cut(s) 105
BsiSI CCGG 1 cut(s) 806
BslI CCNNNNNNNGG 5 cut(s) 297, 333, 520, 737, 874
BsmAI GTCTC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 3 cut(s) 37, 290, 513
Bso31I GGTCTC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 6 cut(s) 111, 168, 254, 565, 849, 864
Bsp1720I GCTNAGC 2 cut(s) 142, 426
BspACI CCGC 3 cut(s) 63, 287, 433
BspANI GGCC 3 cut(s) 37, 290, 513
BspCNI CTCAG 3 cut(s) 155, 439, 709
BspDI ATCGAT 1 cut(s) 105
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 2 cut(s) 658, 665
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 3 cut(s) 262, 857, 859
BspTNI GGTCTC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 3 cut(s) 31, 742, 802
BssECI CCNNGG 1 cut(s) 595
BssMI GATC 6 cut(s) 111, 168, 254, 565, 849, 864
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 4 cut(s) 43, 520, 619, 637
BstC8I GCNNGC 5 cut(s) 81, 402, 511, 555, 661
BstDEI CTNAG 4 cut(s) 142, 221, 426, 717
BstF5I GGATG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 6 cut(s) 114, 171, 257, 568, 852, 867
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 6 cut(s) 111, 168, 254, 565, 849, 864
BstMWI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
BstNI CCWGG 1 cut(s) 160
BstPAI GACNNNNGTC 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 3 cut(s) 615, 654, 661
BstV1I GCAGC 2 cut(s) 640, 668
BstX2I RGATCY 2 cut(s) 849, 864
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 2 cut(s) 849, 864
Bsu15I ATCGAT 1 cut(s) 105
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 3 cut(s) 37, 290, 513
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 735, 795
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 5 cut(s) 81, 402, 511, 555, 661
CciI TCATGA 1 cut(s) 837
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 162, 512, 779
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 633
CviAII CATG 6 cut(s) 166, 455, 544, 833, 838, 846
CviQI GTAC 1 cut(s) 633
DdeI CTNAG 4 cut(s) 142, 221, 426, 717
DpnI GATC 6 cut(s) 113, 170, 256, 567, 851, 866
DpnII GATC 6 cut(s) 111, 168, 254, 565, 849, 864
EaeI YGGCCR 2 cut(s) 35, 288
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 2 cut(s) 162, 779
EcoO109I RGGNCCY 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 595
FaeI CATG 6 cut(s) 169, 458, 547, 836, 841, 849
FatI CATG 6 cut(s) 165, 454, 543, 832, 837, 845
FbaI TGATCA 3 cut(s) 111, 168, 565
Fnu4HI GCNGC 4 cut(s) 288, 433, 654, 657
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 4 cut(s) 288, 433, 654, 657
GlaI GCGC 1 cut(s) 431
GluI GCNGC 4 cut(s) 288, 433, 654, 657
GsaI CCCAGC 1 cut(s) 891
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 3 cut(s) 37, 290, 513
HapII CCGG 1 cut(s) 806
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 432
Hin1II CATG 6 cut(s) 169, 458, 547, 836, 841, 849
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 3 cut(s) 265, 590, 694
HpaII CCGG 1 cut(s) 806
HphI GGTGA 2 cut(s) 130, 617
Hpy188I TCNGA 2 cut(s) 270, 699
Hpy188III TCNNGA 4 cut(s) 22, 262, 838, 868
HpyAV CCTTC 2 cut(s) 61, 476
HpyCH4III ACNGT 4 cut(s) 43, 520, 619, 637
HpyCH4V TGCA 7 cut(s) 400, 476, 509, 629, 656, 663, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
HpyF3I CTNAG 4 cut(s) 142, 221, 426, 717
Hsp92II CATG 6 cut(s) 169, 458, 547, 836, 841, 849
HspAI GCGC 1 cut(s) 430
Ksp22I TGATCA 3 cut(s) 111, 168, 565
Kzo9I GATC 6 cut(s) 111, 168, 254, 565, 849, 864
LmnI GCTCC 2 cut(s) 65, 356
Lsp1109I GCAGC 2 cut(s) 640, 668
LweI GCATC 3 cut(s) 368, 397, 703
MaeIII GTNAC 1 cut(s) 492
MalI GATC 6 cut(s) 113, 170, 256, 567, 851, 866
MboI GATC 6 cut(s) 111, 168, 254, 565, 849, 864
MboII GAAGA 1 cut(s) 844
MfeI CAATTG 2 cut(s) 128, 282
MflI RGATCY 2 cut(s) 849, 864
MhlI GDGCHC 1 cut(s) 143
MlsI TGGCCA 1 cut(s) 37
MluCI AATT 5 cut(s) 123, 128, 282, 788, 822
MluNI TGGCCA 1 cut(s) 37
MmeI TCCRAC 3 cut(s) 121, 346, 855
MnlI CCTC 8 cut(s) 79, 169, 172, 321, 568, 712, 770, 866
Mox20I TGGCCA 1 cut(s) 37
MscI TGGCCA 1 cut(s) 37
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 3 cut(s) 107, 395, 548
Msp20I TGGCCA 1 cut(s) 37
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 1 cut(s) 160
MunI CAATTG 2 cut(s) 128, 282
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 4 cut(s) 287, 356, 383, 455
NdeII GATC 6 cut(s) 111, 168, 254, 565, 849, 864
NlaIII CATG 6 cut(s) 169, 458, 547, 836, 841, 849
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 492
PagI TCATGA 1 cut(s) 837
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 555
PfeI GAWTC 3 cut(s) 265, 590, 694
PflMI CCANNNNNTGG 2 cut(s) 737, 874
PkrI GCNGC 4 cut(s) 289, 434, 655, 658
PshAI GACNNNNGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 887
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 3 cut(s) 162, 512, 779
PstI CTGCAG 2 cut(s) 658, 665
PsuI RGATCY 2 cut(s) 849, 864
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 634
RsaNI GTAC 1 cut(s) 633
RseI CAYNNNNRTG 3 cut(s) 107, 395, 548
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 4 cut(s) 288, 433, 654, 657
Sau3AI GATC 6 cut(s) 111, 168, 254, 565, 849, 864
Sau96I GGNCC 3 cut(s) 162, 512, 779
ScaI AGTACT 1 cut(s) 634
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 1 cut(s) 143
SfaNI GCATC 3 cut(s) 368, 397, 703
SfcI CTRYAG 3 cut(s) 615, 654, 661
SinI GGWCC 2 cut(s) 162, 779
SmiMI CAYNNNNRTG 3 cut(s) 107, 395, 548
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 5 cut(s) 123, 128, 282, 788, 822
SsiI CCGC 3 cut(s) 63, 287, 433
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 4 cut(s) 43, 520, 619, 637
TaqI TCGA 1 cut(s) 105
TasI AATT 5 cut(s) 123, 128, 282, 788, 822
TatI WGTACW 1 cut(s) 632
TauI GCSGC 2 cut(s) 290, 435
TfiI GAWTC 3 cut(s) 265, 590, 694
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 742, 802
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 2 cut(s) 653, 656
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 3 cut(s) 43, 180, 495
TspRI CASTG 2 cut(s) 742, 802
Van91I CCANNNNNTGG 2 cut(s) 737, 874
VpaK11BI GGWCC 2 cut(s) 162, 779
XapI RAATTY 2 cut(s) 123, 788
ZrmI AGTACT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.