Rh5AG533400

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015396
Physical Location & Seq
Forward (+)
91527174 .. 91530430
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG533400.1

Sequence Viewer

Length: 729 bp
ATGGAATTGAACAAGGAGGCTATGGAGAAGAAGGGTCTCTCTGCTGGACTACTAAGACAAGCTACATATACCACAGCTCGTCTTGGATCATTCAGGATTCTGACAAACAAAGCAATTGCGGCCAATGATGGGAAGCCCCTACCTCTATACCAGAAAGCCTTGTGTGGGCTAACTGCTGGTGCTATTGGAGCATCTGTTGGAAGTCCAGCAGATTTAGCTCTCATTCGTATGCAGGCAGATGCCACGTTACCCCTTGCTCAGCGCCGCCACTATAAAAATGCTTTCCATGCTCTTGGTCGCATTGTTGCAGATGAAGGGGTTTTGTCACTTTGGAAAGGTGCAGGCCCTACTGTGGTAAGAGCAATGGCATTGAACATGGGAATGCTTGCCTCTTATGATCAAAGTGTTGAGTTTTTCAAGGATTCCCTTGGTTGTGGTGAAGCTACTACAGTATTGGGTGCAAGTACTGTTTCAGGTTTTTTTGCTGCAGCCTGCAGTTTGCCCTTTGATTATGTGAAAACCCAGATTCAGAAAATGCAACCTGATGCTGAGGGGAAGTATCCATACACTGGGTCTTTTGATTGTGCCGTGAAAACCCTGAAAGCAGGAGGACCATTGAAATTTTACACTGGGTTTCCGGTATATTGTGTTAGAATTGCCCCCCATGTCATGATGACATGGATCTTCCTCAACCAGATCCAGAAGTTGGAAGCTAAAGCTGGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

242

Amino Acids

25.93

Weight (kDa)

9.33

Isoelectric Point (pI)

27.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 46 - 141 2.2e-20 Mitochondrial carrier protein
Mito_carr PF00153 152 - 236 1.4e-14 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19760
fragaria_vesca FvH4_3g45500 FvH4_3g45500
malus_domestica MD03G1004300.v1.1 MD11G1004900.v1.1
prunus_persica Prupe.6G003900_v2.0.a1
pyrus_communis pycom03g00440 pycom11g00400
rosa_chinensis RchiOBHm_Chr5g0083291
rosa_laevigata RLG00000037027
rosa_multiflora Rmu_sc0011792.1_g000009
rosa_roxburghii Rroxscaffold_1G00001200
rosa_rugosa Rorug05G0484100
rosa_samantha Rh5AG533400 Rh5BG560900
rosa_wichuraiana Rw5G049940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 569, 706
AciI CCGC 2 cut(s) 119, 265
AclWI GGATC 3 cut(s) 94, 689, 691
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 620
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 5 cut(s) 129, 165, 352, 569, 706
AgsI TTSAA 4 cut(s) 10, 373, 418, 619
AluBI AGCT 6 cut(s) 62, 77, 218, 443, 713, 719
AluI AGCT 6 cut(s) 62, 77, 218, 443, 713, 719
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 3 cut(s) 94, 689, 691
AoxI GGCC 2 cut(s) 120, 343
ApeKI GCWGC 2 cut(s) 485, 488
ApoI RAATTY 1 cut(s) 620
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 2 cut(s) 344, 611
AsuHPI GGTGA 1 cut(s) 449
AvaII GGWCC 1 cut(s) 611
BarI GAAGNNNNNNTAC 2 cut(s) 548, 580
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 2 cut(s) 472, 500
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 572
BciVI GTATCC 1 cut(s) 570
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 41
BfmI CTRYAG 3 cut(s) 447, 486, 493
BfoI RGCGCY 1 cut(s) 265
BfuI GTATCC 1 cut(s) 570
BisI GCNGC 4 cut(s) 120, 265, 486, 489
BlpI GCTNAGC 1 cut(s) 258
BlsI GCNGC 4 cut(s) 121, 266, 487, 490
BmcAI AGTACT 1 cut(s) 466
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 2 cut(s) 344, 611
BmrI ACTGGG 2 cut(s) 579, 639
BmsI GCATC 3 cut(s) 200, 229, 535
BmuI ACTGGG 2 cut(s) 579, 639
Bpu10I CCTNAGC 1 cut(s) 549
Bpu1102I GCTNAGC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 427
BsaWI WCCGGW 1 cut(s) 637
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 5 cut(s) 129, 165, 352, 569, 706
Bse1I ACTGG 2 cut(s) 574, 634
Bse3DI GCAATG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 427
BseLI CCNNNNNNNGG 5 cut(s) 129, 165, 352, 569, 706
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 272, 540
BseNI ACTGG 2 cut(s) 574, 634
BseXI GCAGC 2 cut(s) 472, 500
BseYI CCCAGC 1 cut(s) 719
BsgI GTGCAG 1 cut(s) 360
BshFI GGCC 2 cut(s) 122, 345
BsiSI CCGG 1 cut(s) 638
BslI CCNNNNNNNGG 5 cut(s) 129, 165, 352, 569, 706
BsmAI GTCTC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 2 cut(s) 122, 345
Bso31I GGTCTC 1 cut(s) 41
Bsp143I GATC 4 cut(s) 86, 397, 681, 696
Bsp1720I GCTNAGC 1 cut(s) 258
BspACI CCGC 2 cut(s) 119, 265
BspANI GGCC 2 cut(s) 122, 345
BspCNI CTCAG 2 cut(s) 271, 541
BspHI TCATGA 1 cut(s) 669
BspMAI CTGCAG 2 cut(s) 490, 497
BspPI GGATC 3 cut(s) 94, 689, 691
BspTNI GGTCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 2 cut(s) 574, 634
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 4 cut(s) 86, 397, 681, 696
BssT1I CCWWGG 1 cut(s) 427
Bst4CI ACNGT 3 cut(s) 352, 451, 469
BstC8I GCNNGC 4 cut(s) 234, 343, 387, 493
BstDEI CTNAG 3 cut(s) 53, 258, 549
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 4 cut(s) 89, 400, 684, 699
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 4 cut(s) 86, 397, 681, 696
BstMWI GCNNNNNNNGC 4 cut(s) 119, 188, 215, 287
BstSFI CTRYAG 3 cut(s) 447, 486, 493
BstV1I GCAGC 2 cut(s) 472, 500
BstX2I RGATCY 2 cut(s) 681, 696
BstXI CCANNNNNNTGG 1 cut(s) 293
BstYI RGATCY 2 cut(s) 681, 696
BsuI GTATCC 1 cut(s) 570
BsuRI GGCC 2 cut(s) 122, 345
BtsIMutI CAGTG 2 cut(s) 567, 627
Cac8I GCNNGC 4 cut(s) 234, 343, 387, 493
CciI TCATGA 1 cut(s) 669
CfoI GCGC 1 cut(s) 264
Cfr13I GGNCC 2 cut(s) 344, 611
Csp6I GTAC 1 cut(s) 465
CviAII CATG 5 cut(s) 287, 376, 665, 670, 678
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 3 cut(s) 53, 258, 549
DpnI GATC 4 cut(s) 88, 399, 683, 698
DpnII GATC 4 cut(s) 86, 397, 681, 696
EaeI YGGCCR 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 427
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 611
EcoO109I RGGNCCY 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 5 cut(s) 290, 379, 668, 673, 681
FatI CATG 5 cut(s) 286, 375, 664, 669, 677
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 4 cut(s) 120, 265, 486, 489
Fsp4HI GCNGC 4 cut(s) 120, 265, 486, 489
GlaI GCGC 1 cut(s) 263
GluI GCNGC 4 cut(s) 120, 265, 486, 489
GsaI CCCAGC 1 cut(s) 723
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 2 cut(s) 122, 345
HapII CCGG 1 cut(s) 638
HhaI GCGC 1 cut(s) 264
Hin1II CATG 5 cut(s) 290, 379, 668, 673, 681
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 3 cut(s) 97, 422, 526
HpaII CCGG 1 cut(s) 638
HphI GGTGA 1 cut(s) 449
Hpy188I TCNGA 2 cut(s) 102, 531
Hpy188III TCNNGA 3 cut(s) 94, 670, 700
HpyAV CCTTC 2 cut(s) 25, 308
HpyCH4III ACNGT 3 cut(s) 352, 451, 469
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 7 cut(s) 232, 308, 341, 461, 488, 495, 538
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 188, 215, 287
HpyF3I CTNAG 3 cut(s) 53, 258, 549
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 5 cut(s) 290, 379, 668, 673, 681
HspAI GCGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 4 cut(s) 86, 397, 681, 696
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 2 cut(s) 472, 500
LweI GCATC 3 cut(s) 200, 229, 535
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 246, 324
MalI GATC 4 cut(s) 88, 399, 683, 698
MboI GATC 4 cut(s) 86, 397, 681, 696
MboII GAAGA 2 cut(s) 40, 676
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 2 cut(s) 681, 696
MluCI AATT 4 cut(s) 5, 114, 620, 654
MmeI TCCRAC 2 cut(s) 178, 687
MnlI CCTC 6 cut(s) 10, 153, 400, 544, 602, 698
MslI CAYNNNNRTG 2 cut(s) 227, 380
MspI CCGG 1 cut(s) 638
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 387
MwoI GCNNNNNNNGC 4 cut(s) 119, 188, 215, 287
NdeII GATC 4 cut(s) 86, 397, 681, 696
NlaIII CATG 5 cut(s) 290, 379, 668, 673, 681
NmuCI GTSAC 1 cut(s) 324
PagI TCATGA 1 cut(s) 669
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 3 cut(s) 97, 422, 526
PflMI CCANNNNNTGG 2 cut(s) 569, 706
PkrI GCNGC 4 cut(s) 121, 266, 487, 490
PspFI CCCAGC 1 cut(s) 719
PspPI GGNCC 2 cut(s) 344, 611
PstI CTGCAG 2 cut(s) 490, 497
PsuI RGATCY 2 cut(s) 681, 696
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
RseI CAYNNNNRTG 2 cut(s) 227, 380
SatI GCNGC 4 cut(s) 120, 265, 486, 489
Sau3AI GATC 4 cut(s) 86, 397, 681, 696
Sau96I GGNCC 2 cut(s) 344, 611
ScaI AGTACT 1 cut(s) 466
SfaNI GCATC 3 cut(s) 200, 229, 535
SfcI CTRYAG 3 cut(s) 447, 486, 493
SinI GGWCC 1 cut(s) 611
SmiMI CAYNNNNRTG 2 cut(s) 227, 380
Sse9I AATT 4 cut(s) 5, 114, 620, 654
SsiI CCGC 2 cut(s) 119, 265
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 3 cut(s) 352, 451, 469
TaiI ACGT 1 cut(s) 248
TasI AATT 4 cut(s) 5, 114, 620, 654
TatI WGTACW 1 cut(s) 464
TauI GCSGC 2 cut(s) 122, 267
TfiI GAWTC 3 cut(s) 97, 422, 526
TscAI CASTG 2 cut(s) 574, 634
TseFI GTSAC 1 cut(s) 324
TseI GCWGC 2 cut(s) 485, 488
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 327
TspRI CASTG 2 cut(s) 574, 634
Van91I CCANNNNNTGG 2 cut(s) 569, 706
VpaK11BI GGWCC 1 cut(s) 611
XapI RAATTY 1 cut(s) 620
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.