AT5G19980

integral membrane family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015464
Physical Location & Seq
Reverse (-)
6749613 .. 6751152
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19980.1

Sequence Viewer

Length: 1026 bp
ATGTCGTCCTCTCGATTCGATTCAAACAAACAATTAACAACAAGCAGTCTCGTAATCGGCTACGCACTCTGCTCAAGCCTCCTCGCCGTAATCAACAAATTAGCAATCACATACTTCAACTACCCAGGTCTCCTCACAGCTCTTCAATACCTAACCTGCACCGTCGCCGTCTATCTTCTCGGCAAATCAGGGTTAATCAATCACGATCCATTCACATGGGACACTGCTAAGAAATTTCTCCCTGCAGCTATCGTCTTCTACCTCGCTATCTTCACAAACACAAACCTCCTCCGTCACGCTAATGTCGATACTTTCATCGTCTTCCGATCTCTAACACCGCTCTTAGTCGCGATCGCTGATACTGTGTTTCGTAGTCAGCCTTTACCTTCGAGACTTACGTTTTTGTCTCTCGTCGTTATCCTCGCTGGAGCTGTTGGGTATGTTGCAACTGACTCGTCTTTTACTCTAACGGCTTATTCATGGGCTTTGGCTTATCTTGTTACCATTACTACTGAAATGGTTTACATTAAGCATATGGTCTCTAATATTAAATTGAACATTTGGGGATTGGTTCTCTACAATAATCTACTGTCTCTGATGATAGCACCGGTGTTCTGGTTTCTTACTGGAGAATTCACCGAGGTTTTCGCGGCGTTGAGTGAGAATAGAGGGAATTTGTTTGAGCCTTATGCGTTTTCTTCTGTGGCTGCGTCGTGTGTGTTTGGTTTCCTTATCAGTTACTTTGGATTTGCTGCTAGGAATGCTATCTCTGCTACTGCTTTTACAGTCACTGGTGTTGTTAACAAGTTCTTGACTGTTGTCATCAATGTTTTGATTTGGGATAAGCATGCCACTCCTGTTGGTTTGGTTTGTCTTCTTTTTACTATCTGTGGAGGTGTTGGTTATCAGCAGAGTGTCAAATTGGATAAACCCATTGAGAAGGTCAGCGAGAAAGATAGCGAGAAGGGAGAGGAAGATGAGGAGTTGACGCAGTTGGTTCCGGGGAAACTAGCTTCTGTTGTATGA

Protein Analysis

341

Amino Acids

37.39

Weight (kDa)

6.89

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 22 - 302 2e-16 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19980
fragaria_vesca FvH4_2g20640 FvH4_6g29120
malus_domestica MD15G1180200.v1.1
prunus_persica Prupe.7G236300_v2.0.a1
pyrus_communis pycom02g03270 pycom15g16160
rosa_chinensis RchiOBHm_Chr2g0089551
rosa_laevigata RLG00000016039
rosa_multiflora Rmu_sc0006193.1_g000006
rosa_roxburghii Rroxscaffold_2G00151830
rosa_rugosa Rorug02G0001500
rosa_samantha Rh2AG046900 Rh2BG045700 Rh2CG047400 Rh2DG046900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 340
AccII CGCG 2 cut(s) 350, 650
AciI CCGC 2 cut(s) 338, 650
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 3 cut(s) 233, 632, 673
AgeI ACCGGT 1 cut(s) 607
AgsI TTSAA 4 cut(s) 24, 118, 146, 556
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 4 cut(s) 140, 248, 431, 1013
AluI AGCT 4 cut(s) 140, 248, 431, 1013
Alw26I GTCTC 6 cut(s) 53, 134, 385, 411, 544, 597
AlwI GGATC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 791
ApeKI GCWGC 3 cut(s) 245, 707, 752
ApoI RAATTY 3 cut(s) 233, 632, 673
AsiGI ACCGGT 1 cut(s) 607
AsiSI GCGATCGC 1 cut(s) 354
AsuC2I CCSGG 1 cut(s) 1002
AsuHPI GGTGA 1 cut(s) 628
BbsI GAAGAC 3 cut(s) 247, 313, 866
BbvI GCAGC 3 cut(s) 257, 694, 739
BceAI ACGGC 3 cut(s) 71, 152, 486
BcgI CGANNNNNNTGC 2 cut(s) 435, 469
BciT130I CCWGG 1 cut(s) 126
BcnI CCSGG 1 cut(s) 1002
BcoDI GTCTC 6 cut(s) 53, 134, 385, 411, 544, 597
BfaI CTAG 2 cut(s) 756, 1010
BfmI CTRYAG 1 cut(s) 243
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 4 cut(s) 246, 651, 708, 753
BlsI GCNGC 4 cut(s) 247, 652, 709, 754
Bme1390I CCNGG 2 cut(s) 126, 1002
BmiI GGNNCC 1 cut(s) 999
BmrFI CCNGG 2 cut(s) 126, 1002
BoxI GACNNNNGTC 1 cut(s) 818
BpiI GAAGAC 3 cut(s) 247, 313, 866
BpmI CTGGAG 2 cut(s) 447, 648
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 1002
BsaI GGTCTC 2 cut(s) 134, 544
BsaJI CCNNGG 3 cut(s) 124, 639, 1001
BsaWI WCCGGW 1 cut(s) 607
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 2 cut(s) 631, 796
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 3 cut(s) 124, 639, 1001
BseNI ACTGG 2 cut(s) 631, 796
BseRI GAGGAG 4 cut(s) 71, 122, 278, 995
BseXI GCAGC 3 cut(s) 257, 694, 739
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 2 cut(s) 350, 650
Bsh1285I CGRYCG 1 cut(s) 354
BshTI ACCGGT 1 cut(s) 607
BsiEI CGRYCG 1 cut(s) 354
BsiSI CCGG 2 cut(s) 608, 1001
BslFI GGGAC 1 cut(s) 233
BsmAI GTCTC 6 cut(s) 53, 134, 385, 411, 544, 597
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 766
Bso31I GGTCTC 2 cut(s) 134, 544
Bsp143I GATC 3 cut(s) 205, 326, 351
Bsp68I TCGCGA 1 cut(s) 350
BspACI CCGC 2 cut(s) 338, 650
BspFNI CGCG 2 cut(s) 350, 650
BspLI GGNNCC 1 cut(s) 999
BspMAI CTGCAG 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 200
BspQI GCTCTTC 1 cut(s) 147
BspTNI GGTCTC 2 cut(s) 134, 544
BsrBI CCGCTC 1 cut(s) 340
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 2 cut(s) 631, 796
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 124, 639, 1001
BssMI GATC 3 cut(s) 205, 326, 351
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 5 cut(s) 163, 364, 591, 787, 817
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 849
BstDEI CTNAG 2 cut(s) 228, 343
BstFNI CGCG 2 cut(s) 350, 650
BstKTI GATC 3 cut(s) 208, 329, 354
BstMAI GTCTC 6 cut(s) 53, 134, 385, 411, 544, 597
BstMBI GATC 3 cut(s) 205, 326, 351
BstMCI CGRYCG 1 cut(s) 354
BstMWI GCNNNNNNNGC 2 cut(s) 761, 770
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 851
BstPAI GACNNNNGTC 1 cut(s) 818
BstSCI CCNGG 2 cut(s) 124, 1000
BstSFI CTRYAG 1 cut(s) 243
BstUI CGCG 2 cut(s) 350, 650
BstV1I GCAGC 3 cut(s) 257, 694, 739
BstV2I GAAGAC 3 cut(s) 247, 313, 866
BstXI CCANNNNNNTGG 1 cut(s) 216
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 222, 789
BtuMI TCGCGA 1 cut(s) 350
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 849
CaiI CAGNNNCTG 1 cut(s) 791
Cfr10I RCCGGY 1 cut(s) 607
CseI GACGC 2 cut(s) 699, 997
CspAI ACCGGT 1 cut(s) 607
CspCI CAANNNNNGTGG 2 cut(s) 841, 876
CviAII CATG 3 cut(s) 216, 480, 848
DdeI CTNAG 2 cut(s) 228, 343
DpnI GATC 3 cut(s) 207, 328, 353
DpnII GATC 3 cut(s) 205, 326, 351
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco31I GGTCTC 2 cut(s) 134, 544
EcoRI GAATTC 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 124
FaeI CATG 3 cut(s) 219, 483, 851
FaiI YATR 9 cut(s) 112, 217, 441, 481, 534, 536, 690, 849, 1024
FaqI GGGAC 1 cut(s) 233
FatI CATG 3 cut(s) 215, 479, 847
FauNDI CATATG 1 cut(s) 534
Fnu4HI GCNGC 4 cut(s) 246, 651, 708, 753
Fsp4HI GCNGC 4 cut(s) 246, 651, 708, 753
FspBI CTAG 2 cut(s) 756, 1010
GluI GCNGC 4 cut(s) 246, 651, 708, 753
GsuI CTGGAG 2 cut(s) 447, 648
HapII CCGG 2 cut(s) 608, 1001
HgaI GACGC 2 cut(s) 699, 997
Hin1II CATG 3 cut(s) 219, 483, 851
HincII GTYRAC 2 cut(s) 802, 987
HindII GTYRAC 2 cut(s) 802, 987
HinfI GANTC 3 cut(s) 15, 20, 452
HpaI GTTAAC 1 cut(s) 802
HpaII CCGG 2 cut(s) 608, 1001
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 3 cut(s) 523, 802, 987
Hpy188I TCNGA 2 cut(s) 326, 597
Hpy188III TCNNGA 5 cut(s) 12, 203, 349, 390, 811
Hpy8I GTNNAC 3 cut(s) 523, 802, 987
Hpy99I CGWCG 3 cut(s) 167, 416, 715
HpyAV CCTTC 3 cut(s) 396, 934, 958
HpyCH4III ACNGT 5 cut(s) 163, 364, 591, 787, 817
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 3 cut(s) 159, 245, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 761, 770
HpyF3I CTNAG 2 cut(s) 228, 343
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 3 cut(s) 219, 483, 851
KspAI GTTAAC 1 cut(s) 802
Kzo9I GATC 3 cut(s) 205, 326, 351
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 3 cut(s) 257, 694, 739
MaeI CTAG 2 cut(s) 756, 1010
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 4 cut(s) 293, 499, 737, 787
MalI GATC 3 cut(s) 207, 328, 353
MbiI CCGCTC 1 cut(s) 340
MboI GATC 3 cut(s) 205, 326, 351
MboII GAAGA 8 cut(s) 134, 167, 247, 262, 313, 690, 866, 986
MluCI AATT 7 cut(s) 32, 98, 233, 551, 632, 673, 920
MlyI GAGTC 1 cut(s) 446
MseI TTAA 5 cut(s) 35, 194, 528, 549, 801
MslI CAYNNNNRTG 2 cut(s) 214, 300
MspI CCGG 2 cut(s) 608, 1001
MspR9I CCNGG 2 cut(s) 126, 1002
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 2 cut(s) 350, 650
MwoI GCNNNNNNNGC 2 cut(s) 761, 770
NciI CCSGG 1 cut(s) 1002
NdeI CATATG 1 cut(s) 534
NdeII GATC 3 cut(s) 205, 326, 351
NlaIII CATG 3 cut(s) 219, 483, 851
NlaIV GGNNCC 1 cut(s) 999
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 2 cut(s) 293, 787
NruI TCGCGA 1 cut(s) 350
NspI RCATGY 1 cut(s) 851
PaeI GCATGC 1 cut(s) 851
PciSI GCTCTTC 1 cut(s) 147
PcsI WCGNNNNNNNCGW 2 cut(s) 303, 395
PctI GAATGC 1 cut(s) 766
PfeI GAWTC 2 cut(s) 15, 20
PinAI ACCGGT 1 cut(s) 607
PkrI GCNGC 4 cut(s) 247, 652, 709, 754
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PshAI GACNNNNGTC 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 999
PstI CTGCAG 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 791
PvuI CGATCG 1 cut(s) 354
RgaI GCGATCGC 1 cut(s) 354
RruI TCGCGA 1 cut(s) 350
RseI CAYNNNNRTG 2 cut(s) 214, 300
SapI GCTCTTC 1 cut(s) 147
SaqAI TTAA 5 cut(s) 35, 194, 528, 549, 801
SatI GCNGC 4 cut(s) 246, 651, 708, 753
Sau3AI GATC 3 cut(s) 205, 326, 351
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 2 cut(s) 126, 1002
SfaAI GCGATCGC 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 243
SgfI GCGATCGC 1 cut(s) 354
SgrAI CRCCGGYG 1 cut(s) 607
SmiMI CAYNNNNRTG 2 cut(s) 214, 300
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
SphI GCATGC 1 cut(s) 851
Sse9I AATT 7 cut(s) 32, 98, 233, 551, 632, 673, 920
SsiI CCGC 2 cut(s) 338, 650
SspI AATATT 1 cut(s) 547
SspMI CTAG 2 cut(s) 756, 1010
StyD4I CCNGG 2 cut(s) 124, 1000
TaaI ACNGT 5 cut(s) 163, 364, 591, 787, 817
TaiI ACGT 1 cut(s) 401
TaqI TCGA 4 cut(s) 13, 18, 306, 389
TasI AATT 7 cut(s) 32, 98, 233, 551, 632, 673, 920
TauI GCSGC 1 cut(s) 653
TfiI GAWTC 2 cut(s) 15, 20
Tru1I TTAA 5 cut(s) 35, 194, 528, 549, 801
Tru9I TTAA 5 cut(s) 35, 194, 528, 549, 801
TscAI CASTG 2 cut(s) 229, 796
TseFI GTSAC 2 cut(s) 293, 787
TseI GCWGC 3 cut(s) 245, 707, 752
Tsp45I GTSAC 2 cut(s) 293, 787
TspDTI ATGAA 2 cut(s) 304, 468
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 2 cut(s) 229, 796
XapI RAATTY 3 cut(s) 233, 632, 673
XceI RCATGY 1 cut(s) 851
XspI CTAG 2 cut(s) 756, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.