pycom02g03270

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0015464
Physical Location & Seq
Forward (+)
2150812 .. 2151864
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g03270.1

Sequence Viewer

Length: 1053 bp
ATGTCTGCGATTAGAGTCGATTCCGCTAAGCCGTATTTCGCTACGAGCAGTCTAGTGATTGGGTATGCTCTCTGTTCTAGCTTATTAGCTGTGATAAACAAGTTTGCCATTACCAAATTCAACTACCCTGGCCTTTTGACTGCATTGCAGTACCTTACTTCTGCTTTGGGAGTTTGGGTTTTGGGAAAGTCGGGATTTTTGCACCACGATCCCTTCACATGGCAGACGGCGAAGAAGTTTTTACCTGCTGCACTTGTGTTCTACCTTGCTATCTTTACCAACACCAATCTTCTTCGCCATGCCAATGTGGATACTTTTATAGTATTTAGATCCTGCACACCCCTTTTGGTTGCGTTGGCGGATACTGCATTTAGGAAACAGCCTATCCCGTCTAAGCTTACCTTTGTGTCGTTGTTGATCATTTTGGGTGGAGCTGTTGGTTATGTGGCCACAGATTCGGGTTTTACTTTGACTGCGTATTCATGGGCGTTTGCTTATTTGGTGACCATTACAACTGAGATGGTTTATATTAAGCATATGGTCACAAATCTCGGGTTGAACACATGGGGTTTTGTGTTGTACAACAATCTTTTGTCACTGATGATGGCTCCTCCATTTTGGATAATTACTGGAGAGTATTCTGATGTGTTTGCTGCTTTGGGGTCGAATGCTGCGAATTTCTTTGAACCTGGTGCACTTTTCGCGGTCTCATTGTCATGTGTGTTTGGATTGCTCATCAGTTTCTTTGGGTTTGCAGCAAGGAAGGCAGTCTCTGCTACCGCATTTACTGTGACTGGTGTTGTGAACAAGTTTCTTACGGTTGCAATCAATGTGCTAATTTGGGATAAGCATGCTAGTCCATTCGGTTTGCTCTGTCTCCTCTTAACAATCGTAGGGGGTATTCTTTATCAGCAGTCTGTAACTGGAGTAAGCAGTGCTCCGTCACCACGTGAAGCAACAGCATCTAAGCAGGCTCTCAGTGAGAATGAGGATGATGACTTTTCCGAAGAAAATCAAGGGACGGTAGTTTCCGGTAAACTTGCTTCTAAGTGA

Protein Analysis

351

Amino Acids

37.8

Weight (kDa)

8.57

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 24 - 303 8.6e-16 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19980
fragaria_vesca FvH4_2g20640 FvH4_6g29120
malus_domestica MD15G1180200.v1.1
prunus_persica Prupe.7G236300_v2.0.a1
pyrus_communis pycom02g03270 pycom15g16160
rosa_chinensis RchiOBHm_Chr2g0089551
rosa_laevigata RLG00000016039
rosa_multiflora Rmu_sc0006193.1_g000006
rosa_roxburghii Rroxscaffold_2G00151830
rosa_rugosa Rorug02G0001500
rosa_samantha Rh2AG046900 Rh2BG045700 Rh2CG047400 Rh2DG046900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
AccII CGCG 1 cut(s) 704
AciI CCGC 4 cut(s) 24, 359, 704, 780
AclWI GGATC 2 cut(s) 203, 324
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 2 cut(s) 116, 676
AcvI CACGTG 1 cut(s) 950
AdeI CACNNNGTG 1 cut(s) 950
AfaI GTAC 2 cut(s) 152, 581
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 3 cut(s) 121, 559, 686
AjnI CCWGG 2 cut(s) 127, 688
AluBI AGCT 4 cut(s) 81, 89, 397, 434
AluI AGCT 4 cut(s) 81, 89, 397, 434
Alw21I GWGCWC 2 cut(s) 697, 940
Alw26I GTCTC 3 cut(s) 712, 775, 881
Alw44I GTGCAC 1 cut(s) 693
AlwI GGATC 2 cut(s) 203, 324
AlwNI CAGNNNCTG 1 cut(s) 773
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 2 cut(s) 130, 447
ApaLI GTGCAC 1 cut(s) 693
ApeKI GCWGC 4 cut(s) 248, 653, 671, 755
ApoI RAATTY 2 cut(s) 116, 676
AsuHPI GGTGA 2 cut(s) 514, 936
AvaI CYCGRG 1 cut(s) 551
BaeGI GKGCMC 1 cut(s) 697
BalI TGGCCA 1 cut(s) 449
BarI GAAGNNNNNNTAC 1 cut(s) 1027
BbrPI CACGTG 1 cut(s) 950
Bbv12I GWGCWC 2 cut(s) 697, 940
BbvI GCAGC 4 cut(s) 235, 640, 658, 767
BccI CCATC 2 cut(s) 514, 598
BceAI ACGGC 2 cut(s) 16, 243
BciT130I CCWGG 2 cut(s) 129, 690
BciVI GTATCC 2 cut(s) 304, 355
BclI TGATCA 1 cut(s) 417
BcoDI GTCTC 3 cut(s) 712, 775, 881
BfaI CTAG 3 cut(s) 53, 78, 855
BfuAI ACCTGC 1 cut(s) 253
BfuI GTATCC 2 cut(s) 304, 355
BisI GCNGC 4 cut(s) 249, 654, 672, 756
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 4 cut(s) 250, 655, 673, 757
Bme1390I CCNGG 2 cut(s) 129, 690
BmeT110I CYCGRG 1 cut(s) 551
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 2 cut(s) 129, 690
BmsI GCATC 1 cut(s) 971
BpmI CTGGAG 2 cut(s) 651, 945
Bpu1102I GCTNAGC 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 950
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 1031
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 3 cut(s) 634, 799, 928
Bse3DI GCAATG 1 cut(s) 143
BseBI CCWGG 2 cut(s) 129, 690
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 997
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 507, 991
BseNI ACTGG 3 cut(s) 634, 799, 928
BseRI GAGGAG 2 cut(s) 600, 869
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 4 cut(s) 235, 640, 658, 767
BsgI GTGCAG 2 cut(s) 234, 319
Bsh1236I CGCG 1 cut(s) 704
BshFI GGCC 2 cut(s) 132, 449
BsiHKAI GWGCWC 2 cut(s) 697, 940
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 1 cut(s) 1032
BslFI GGGAC 1 cut(s) 1033
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 3 cut(s) 712, 775, 881
BsmFI GGGAC 1 cut(s) 1033
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 2 cut(s) 132, 449
Bso31I GGTCTC 1 cut(s) 712
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 2 cut(s) 697, 940
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 3 cut(s) 208, 329, 417
Bsp1720I GCTNAGC 1 cut(s) 27
BspACI CCGC 4 cut(s) 24, 359, 704, 780
BspANI GGCC 2 cut(s) 132, 449
BspCNI CTCAG 2 cut(s) 508, 990
BspFNI CGCG 1 cut(s) 704
BspLI GGNNCC 1 cut(s) 609
BspMI ACCTGC 1 cut(s) 253
BspPI GGATC 2 cut(s) 203, 324
BspTNI GGTCTC 1 cut(s) 712
BsrDI GCAATG 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 3 cut(s) 634, 799, 928
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 3 cut(s) 208, 329, 417
Bst2UI CCWGG 2 cut(s) 129, 690
Bst4CI ACNGT 3 cut(s) 790, 820, 1024
BstAPI GCANNNNNTGC 1 cut(s) 773
BstAUI TGTACA 1 cut(s) 579
BstBAI YACGTR 1 cut(s) 950
BstC8I GCNNGC 2 cut(s) 852, 972
BstDEI CTNAG 6 cut(s) 27, 393, 516, 966, 977, 1047
BstEII GGTNACC 1 cut(s) 502
BstF5I GGATG 1 cut(s) 997
BstFNI CGCG 1 cut(s) 704
BstKTI GATC 3 cut(s) 211, 332, 420
BstMAI GTCTC 3 cut(s) 712, 775, 881
BstMBI GATC 3 cut(s) 208, 329, 417
BstMWI GCNNNNNNNGC 4 cut(s) 365, 701, 764, 773
BstNI CCWGG 2 cut(s) 129, 690
BstNSI RCATGY 1 cut(s) 854
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 2 cut(s) 127, 688
BstSLI GKGCMC 1 cut(s) 697
BstUI CGCG 1 cut(s) 704
BstV1I GCAGC 4 cut(s) 235, 640, 658, 767
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BsuI GTATCC 2 cut(s) 304, 355
BsuRI GGCC 2 cut(s) 132, 449
BtsCI GGATG 1 cut(s) 997
BtsI GCAGTG 1 cut(s) 940
BtsIMutI CAGTG 3 cut(s) 596, 940, 985
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 852, 972
CaiI CAGNNNCTG 1 cut(s) 773
CsiI ACCWGGT 1 cut(s) 688
Csp6I GTAC 2 cut(s) 151, 580
CviAII CATG 6 cut(s) 219, 299, 483, 564, 717, 851
CviQI GTAC 2 cut(s) 151, 580
DdeI CTNAG 6 cut(s) 27, 393, 516, 966, 977, 1047
DpnI GATC 3 cut(s) 210, 331, 419
DpnII GATC 3 cut(s) 208, 329, 417
DraIII CACNNNGTG 1 cut(s) 950
EaeI YGGCCR 1 cut(s) 447
EciI GGCGGA 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 712
Eco72I CACGTG 1 cut(s) 950
Eco88I CYCGRG 1 cut(s) 551
Eco91I GGTNACC 1 cut(s) 502
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 2 cut(s) 127, 688
FaeI CATG 6 cut(s) 222, 302, 486, 567, 720, 854
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 1033
FatI CATG 6 cut(s) 218, 298, 482, 563, 716, 850
FauNDI CATATG 1 cut(s) 537
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 4 cut(s) 249, 654, 672, 756
FokI GGATG 1 cut(s) 1004
Fsp4HI GCNGC 4 cut(s) 249, 654, 672, 756
FspBI CTAG 3 cut(s) 53, 78, 855
GluI GCNGC 4 cut(s) 249, 654, 672, 756
GsuI CTGGAG 2 cut(s) 651, 945
HaeIII GGCC 2 cut(s) 132, 449
HapII CCGG 1 cut(s) 1032
Hin1II CATG 6 cut(s) 222, 302, 486, 567, 720, 854
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 3 cut(s) 15, 20, 455
HpaII CCGG 1 cut(s) 1032
HphI GGTGA 2 cut(s) 514, 936
Hpy166II GTNNAC 3 cut(s) 695, 805, 1037
Hpy188I TCNGA 2 cut(s) 643, 1006
Hpy188III TCNNGA 1 cut(s) 192
Hpy8I GTNNAC 3 cut(s) 695, 805, 1037
HpyAV CCTTC 2 cut(s) 223, 757
HpyCH4III ACNGT 3 cut(s) 790, 820, 1024
HpyCH4IV ACGT 1 cut(s) 949
HpyCH4V TGCA 9 cut(s) 143, 148, 202, 251, 336, 368, 695, 755, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 365, 701, 764, 773
HpyF3I CTNAG 6 cut(s) 27, 393, 516, 966, 977, 1047
HpySE526I ACGT 1 cut(s) 949
Hsp92II CATG 6 cut(s) 222, 302, 486, 567, 720, 854
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 3 cut(s) 208, 329, 417
LmnI GCTCC 3 cut(s) 431, 613, 943
Lsp1109I GCAGC 4 cut(s) 235, 640, 658, 767
LweI GCATC 1 cut(s) 971
MabI ACCWGGT 1 cut(s) 688
MaeI CTAG 3 cut(s) 53, 78, 855
MaeII ACGT 1 cut(s) 949
MaeIII GTNAC 6 cut(s) 502, 541, 594, 790, 919, 942
MalI GATC 3 cut(s) 210, 331, 419
MboI GATC 3 cut(s) 208, 329, 417
MboII GAAGA 4 cut(s) 244, 281, 284, 1019
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 2 cut(s) 697, 940
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 4 cut(s) 116, 624, 676, 837
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 3 cut(s) 621, 890, 982
Mox20I TGGCCA 1 cut(s) 449
MscI TGGCCA 1 cut(s) 449
MseI TTAA 2 cut(s) 531, 884
MslI CAYNNNNRTG 2 cut(s) 303, 715
Msp20I TGGCCA 1 cut(s) 449
MspI CCGG 1 cut(s) 1032
MspR9I CCNGG 2 cut(s) 129, 690
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 2 cut(s) 129, 690
MvnI CGCG 1 cut(s) 704
MwoI GCNNNNNNNGC 4 cut(s) 365, 701, 764, 773
NdeI CATATG 1 cut(s) 537
NdeII GATC 3 cut(s) 208, 329, 417
NlaIII CATG 6 cut(s) 222, 302, 486, 567, 720, 854
NlaIV GGNNCC 1 cut(s) 609
NmuCI GTSAC 5 cut(s) 502, 541, 594, 790, 942
NspI RCATGY 1 cut(s) 854
PaeI GCATGC 1 cut(s) 854
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 2 cut(s) 20, 455
PkrI GCNGC 4 cut(s) 250, 655, 673, 757
PleI GAGTC 1 cut(s) 23
PmaCI CACGTG 1 cut(s) 950
PmlI CACGTG 1 cut(s) 950
PpsI GAGTC 1 cut(s) 23
Ppu21I YACGTR 1 cut(s) 950
Psp6I CCWGG 2 cut(s) 127, 688
PspCI CACGTG 1 cut(s) 950
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 2 cut(s) 127, 688
PspN4I GGNNCC 1 cut(s) 609
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 1 cut(s) 329
RsaI GTAC 2 cut(s) 152, 581
RsaNI GTAC 2 cut(s) 151, 580
RseI CAYNNNNRTG 2 cut(s) 303, 715
SaqAI TTAA 2 cut(s) 531, 884
SatI GCNGC 4 cut(s) 249, 654, 672, 756
Sau3AI GATC 3 cut(s) 208, 329, 417
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 2 cut(s) 129, 690
SduI GDGCHC 2 cut(s) 697, 940
SexAI ACCWGGT 1 cut(s) 688
SfaNI GCATC 1 cut(s) 971
SmiMI CAYNNNNRTG 2 cut(s) 303, 715
SphI GCATGC 1 cut(s) 854
Sse9I AATT 4 cut(s) 116, 624, 676, 837
SsiI CCGC 4 cut(s) 24, 359, 704, 780
SspMI CTAG 3 cut(s) 53, 78, 855
StyD4I CCNGG 2 cut(s) 127, 688
TaaI ACNGT 3 cut(s) 790, 820, 1024
TaiI ACGT 1 cut(s) 952
TaqI TCGA 2 cut(s) 18, 665
TasI AATT 4 cut(s) 116, 624, 676, 837
TatI WGTACW 1 cut(s) 579
TfiI GAWTC 2 cut(s) 20, 455
Tru1I TTAA 2 cut(s) 531, 884
Tru9I TTAA 2 cut(s) 531, 884
TscAI CASTG 3 cut(s) 603, 940, 985
TseFI GTSAC 5 cut(s) 502, 541, 594, 790, 942
TseI GCWGC 4 cut(s) 248, 653, 671, 755
Tsp45I GTSAC 5 cut(s) 502, 541, 594, 790, 942
TspDTI ATGAA 1 cut(s) 471
TspGWI ACGGA 1 cut(s) 930
TspRI CASTG 3 cut(s) 603, 940, 985
VneI GTGCAC 1 cut(s) 693
XapI RAATTY 2 cut(s) 116, 676
XceI RCATGY 1 cut(s) 854
XspI CTAG 3 cut(s) 53, 78, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.