Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015464

Physical Location & Seq

Genomic Coordinates Reverse (-)

17285002 .. 17286042

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCTGCGATTAGAGTTGATCCTAAGCAGTACTACGCCACTAGTAGTCTTCTGATTGGCTATGCACTATGTTCTAGCTTGTTAGCTGTGATAAACAAGTTTGCCATCACCAAATTCAACTACCCTGGTCTTTTGACCGCTCTGCAATACCTCACTTCTGCTTTGGGGGTTTGGGTTTTGGGCAAGTTGGGGTTTTTGCACCATGATGCATTCACATGGGAAACAGCTAAGAAGTTCTTGCCCGCTGCTCTTGTGTTTTATCTTGCCATTTTCACCAACACTAATCTGCTTAGACATGCCAATGTGGATACTTTTATAGTGTTCCGGTCGTGTACGCCTATTTTGGTTGCGCTGGCTGATACGGTGTTTAGGAAGCAGAAGTGCCCGTCGAAGCTTACATTTCTGTCTTTGTTGGTGATTTTGGGTGGAGCTGTTGGCTATGTGGCCACTGATAATGGGTTTACTTTGACTGCTTATTCATGGGCGTTTGCGTATTTGGTGACCATTACTACTGAGATGGTGTATATTAAGCATATGGTGACGAATCTCGGGTTGAACACTTGGGGTTTTGTGTTGTATAACAATTTGCTGTCATTGATGATGGCTCCGCCGTTCTGGATCATTACAGGGGAGTATGTTGAGGTGTATGCTGCTTTGGGATCCAAGACTGACAACTTCTTTGCACCTGGTGCATTCTTTGCAGTGTCATTGTCATGTGTGTTTGGTTTGCTCATCAGCTTCTTTGGGTTTGCGGCGAGGAAGGCAGTGTCTGCAACAGCGTTTACAGTGACTGGTGTTGTTAACAAGTTTCTTACAGTTGCTATCAATGTCATGATATGGGATAAGCATGCCAGTCCCTTTGGTTTGATCTGCCTCCTAATGACAATCGTTGGTGGTGTCTTTTATCAGCAATCAGTAACTGGACCTAGCAGTGCCCCATCAAAGGGTGAATCATTGTTGCCTAAGCAGACTCACAGTGAGAACGATGGTGATGACTTTGAAAATGAAAATCAAGGAGTTTCTAGTAAACTAGTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015783 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

347

Amino Acids

37.81

Weight (kDa)

8.68

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	23 - 302	6.4e-16	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19980
fragaria_vesca	FvH4_2g20640 FvH4_6g29120
malus_domestica	MD15G1180200.v1.1
prunus_persica	Prupe.7G236300_v2.0.a1
pyrus_communis	pycom02g03270 pycom15g16160
rosa_chinensis	RchiOBHm_Chr2g0089551
rosa_laevigata	RLG00000016039
rosa_multiflora	Rmu_sc0006193.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151830
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2AG046900 Rh2BG045700 Rh2CG047400 Rh2DG046900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	4 cut(s)	138, 243, 608, 752
AclWI	GGATC	4 cut(s)	14, 626, 654, 667
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	113
AdeI	CACNNNGTG	1 cut(s)	689
AfaI	GTAC	2 cut(s)	32, 334
AfiI	CCNNNNNNNGG	2 cut(s)	943, 944
AgsI	TTSAA	3 cut(s)	118, 556, 1001
AhlI	ACTAGT	2 cut(s)	41, 1030
AjnI	CCWGG	2 cut(s)	124, 685
AluBI	AGCT	6 cut(s)	78, 86, 227, 394, 431, 738
AluI	AGCT	6 cut(s)	78, 86, 227, 394, 431, 738
AlwI	GGATC	4 cut(s)	14, 626, 654, 667
AlwNI	CAGNNNCTG	3 cut(s)	770, 791, 920
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	1 cut(s)	444
ApeKI	GCWGC	2 cut(s)	245, 650
ApoI	RAATTY	1 cut(s)	113
ArsI	GACNNNNNNTTYG	2 cut(s)	662, 694
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	923
AsuHPI	GGTGA	7 cut(s)	100, 265, 427, 511, 550, 959, 1001
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	923
BaeGI	GKGCMC	2 cut(s)	386, 937
BalI	TGGCCA	1 cut(s)	446
BamHI	GGATCC	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	232, 637
BccI	CCATC	5 cut(s)	113, 511, 595, 946, 980
BceAI	ACGGC	1 cut(s)	595
BciT130I	CCWGG	2 cut(s)	126, 687
BciVI	GTATCC	1 cut(s)	301
BcuI	ACTAGT	2 cut(s)	41, 1030
BfaI	CTAG	5 cut(s)	42, 75, 927, 1023, 1031
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	3 cut(s)	246, 651, 753
BlsI	GCNGC	3 cut(s)	247, 652, 754
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	2 cut(s)	126, 687
Bme18I	GGWCC	1 cut(s)	923
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	923
BmiI	GGNNCC	2 cut(s)	606, 661
BmrFI	CCNGG	2 cut(s)	126, 687
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	41
Bpu10I	CCTNAGC	2 cut(s)	24, 963
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	943, 944
Bse1I	ACTGG	3 cut(s)	796, 852, 925
BseBI	CCWGG	2 cut(s)	126, 687
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	943, 944
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	3 cut(s)	796, 852, 925
BseSI	GKGCMC	2 cut(s)	386, 937
BseXI	GCAGC	2 cut(s)	232, 637
Bsh1285I	CGRYCG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	840
BslI	CCNNNNNNNGG	2 cut(s)	943, 944
BsmFI	GGGAC	1 cut(s)	840
BsmI	GAATGC	2 cut(s)	209, 692
BsnI	GGCC	1 cut(s)	446
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	2 cut(s)	386, 937
Bsp143I	GATC	4 cut(s)	19, 618, 659, 867
BspACI	CCGC	4 cut(s)	138, 243, 608, 752
BspANI	GGCC	1 cut(s)	446
BspCNI	CTCAG	1 cut(s)	505
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	2 cut(s)	606, 661
BspPI	GGATC	4 cut(s)	14, 626, 654, 667
BsrBI	CCGCTC	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	796, 852, 925
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	4 cut(s)	19, 618, 659, 867
Bst2UI	CCWGG	2 cut(s)	126, 687
Bst4CI	ACNGT	4 cut(s)	364, 787, 817, 977
BstAPI	GCANNNNNTGC	3 cut(s)	689, 698, 770
BstC8I	GCNNGC	3 cut(s)	243, 354, 849
BstDEI	CTNAG	5 cut(s)	24, 228, 290, 513, 963
BstEII	GGTNACC	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	4 cut(s)	22, 621, 662, 870
BstMBI	GATC	4 cut(s)	19, 618, 659, 867
BstMCI	CGRYCG	1 cut(s)	329
BstMWI	GCNNNNNNNGC	4 cut(s)	689, 698, 761, 770
BstNI	CCWGG	2 cut(s)	126, 687
BstNSI	RCATGY	2 cut(s)	299, 851
BstPI	GGTNACC	1 cut(s)	499
BstSCI	CCNGG	2 cut(s)	124, 685
BstSLI	GKGCMC	2 cut(s)	386, 937
BstV1I	GCAGC	2 cut(s)	232, 637
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	446
BtsI	GCAGTG	3 cut(s)	708, 771, 937
BtsIMutI	CAGTG	6 cut(s)	447, 708, 771, 792, 937, 982
Cac8I	GCNNGC	3 cut(s)	243, 354, 849
CaiI	CAGNNNCTG	3 cut(s)	770, 791, 920
CciI	TCATGA	1 cut(s)	831
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	923
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	2 cut(s)	31, 333
CviAII	CATG	7 cut(s)	203, 216, 296, 480, 714, 832, 848
CviQI	GTAC	2 cut(s)	31, 333
DdeI	CTNAG	5 cut(s)	24, 228, 290, 513, 963
DpnI	GATC	4 cut(s)	21, 620, 661, 869
DpnII	GATC	4 cut(s)	19, 618, 659, 867
DraIII	CACNNNGTG	1 cut(s)	689
EaeI	YGGCCR	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	923
Eco88I	CYCGRG	1 cut(s)	548
Eco91I	GGTNACC	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	499
EcoRII	CCWGG	2 cut(s)	124, 685
EcoT22I	ATGCAT	1 cut(s)	211
FaeI	CATG	7 cut(s)	206, 219, 299, 483, 717, 835, 851
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	1 cut(s)	840
FatI	CATG	7 cut(s)	202, 215, 295, 479, 713, 831, 847
FauI	CCCGC	1 cut(s)	250
FauNDI	CATATG	2 cut(s)	534, 1037
Fnu4HI	GCNGC	3 cut(s)	246, 651, 753
Fsp4HI	GCNGC	3 cut(s)	246, 651, 753
FspBI	CTAG	5 cut(s)	42, 75, 927, 1023, 1031
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	3 cut(s)	246, 651, 753
HaeIII	GGCC	1 cut(s)	446
HapII	CCGG	1 cut(s)	325
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	7 cut(s)	206, 219, 299, 483, 717, 835, 851
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	3 cut(s)	544, 950, 970
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	1 cut(s)	325
HphI	GGTGA	7 cut(s)	100, 265, 427, 511, 550, 959, 1001
Hpy166II	GTNNAC	5 cut(s)	333, 462, 783, 802, 1028
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	616, 832
Hpy8I	GTNNAC	5 cut(s)	333, 462, 783, 802, 1028
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	754
HpyCH4III	ACNGT	4 cut(s)	364, 787, 817, 977
HpyCH4V	TGCA	8 cut(s)	65, 145, 199, 209, 683, 692, 701, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	689, 698, 761, 770
HpyF3I	CTNAG	5 cut(s)	24, 228, 290, 513, 963
Hsp92II	CATG	7 cut(s)	206, 219, 299, 483, 717, 835, 851
HspAI	GCGC	1 cut(s)	350
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	4 cut(s)	19, 618, 659, 867
LmnI	GCTCC	2 cut(s)	428, 610
Lsp1109I	GCAGC	2 cut(s)	232, 637
LweI	GCATC	1 cut(s)	196
MabI	ACCWGGT	1 cut(s)	685
MaeI	CTAG	5 cut(s)	42, 75, 927, 1023, 1031
MaeIII	GTNAC	4 cut(s)	499, 538, 787, 916
MalI	GATC	4 cut(s)	21, 620, 661, 869
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	4 cut(s)	19, 618, 659, 867
MboII	GAAGA	1 cut(s)	41
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	2 cut(s)	386, 937
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	2 cut(s)	113, 583
MluNI	TGGCCA	1 cut(s)	446
MlyI	GAGTC	1 cut(s)	964
MnlI	CCTC	4 cut(s)	161, 634, 750, 884
Mox20I	TGGCCA	1 cut(s)	446
Mph1103I	ATGCAT	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	2 cut(s)	528, 801
MslI	CAYNNNNRTG	4 cut(s)	204, 214, 300, 712
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	2 cut(s)	126, 687
Mva1269I	GAATGC	2 cut(s)	209, 692
MvaI	CCWGG	2 cut(s)	126, 687
MwoI	GCNNNNNNNGC	4 cut(s)	689, 698, 761, 770
NdeI	CATATG	2 cut(s)	534, 1037
NdeII	GATC	4 cut(s)	19, 618, 659, 867
NlaIII	CATG	7 cut(s)	206, 219, 299, 483, 717, 835, 851
NlaIV	GGNNCC	2 cut(s)	606, 661
NmuCI	GTSAC	3 cut(s)	499, 538, 787
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	2 cut(s)	299, 851
PaeI	GCATGC	1 cut(s)	851
PagI	TCATGA	1 cut(s)	831
PctI	GAATGC	2 cut(s)	209, 692
PfeI	GAWTC	2 cut(s)	544, 950
PkrI	GCNGC	3 cut(s)	247, 652, 754
PleI	GAGTC	1 cut(s)	964
PpsI	GAGTC	1 cut(s)	964
Psp6I	CCWGG	2 cut(s)	124, 685
PspEI	GGTNACC	1 cut(s)	499
PspGI	CCWGG	2 cut(s)	124, 685
PspN4I	GGNNCC	2 cut(s)	606, 661
PspPI	GGNCC	1 cut(s)	923
PstNI	CAGNNNCTG	3 cut(s)	770, 791, 920
PsuI	RGATCY	1 cut(s)	659
RsaI	GTAC	2 cut(s)	32, 334
RsaNI	GTAC	2 cut(s)	31, 333
RseI	CAYNNNNRTG	4 cut(s)	204, 214, 300, 712
SaqAI	TTAA	2 cut(s)	528, 801
SatI	GCNGC	3 cut(s)	246, 651, 753
Sau3AI	GATC	4 cut(s)	19, 618, 659, 867
Sau96I	GGNCC	1 cut(s)	923
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	1 cut(s)	964
ScrFI	CCNGG	2 cut(s)	126, 687
SduI	GDGCHC	2 cut(s)	386, 937
SexAI	ACCWGGT	1 cut(s)	685
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	923
SmiMI	CAYNNNNRTG	4 cut(s)	204, 214, 300, 712
SpeI	ACTAGT	2 cut(s)	41, 1030
SphI	GCATGC	1 cut(s)	851
Sse9I	AATT	2 cut(s)	113, 583
SsiI	CCGC	4 cut(s)	138, 243, 608, 752
SspMI	CTAG	5 cut(s)	42, 75, 927, 1023, 1031
StyD4I	CCNGG	2 cut(s)	124, 685
TaaI	ACNGT	4 cut(s)	364, 787, 817, 977
TaqI	TCGA	1 cut(s)	389
TasI	AATT	2 cut(s)	113, 583
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	1 cut(s)	755
TfiI	GAWTC	2 cut(s)	544, 950
Tru1I	TTAA	2 cut(s)	528, 801
Tru9I	TTAA	2 cut(s)	528, 801
TscAI	CASTG	6 cut(s)	454, 708, 771, 792, 937, 982
TseFI	GTSAC	3 cut(s)	499, 538, 787
TseI	GCWGC	2 cut(s)	245, 650
Tsp45I	GTSAC	3 cut(s)	499, 538, 787
TspDTI	ATGAA	2 cut(s)	468, 1020
TspRI	CASTG	6 cut(s)	454, 708, 771, 792, 937, 982
VpaK11BI	GGWCC	1 cut(s)	923
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	2 cut(s)	299, 851
XspI	CTAG	5 cut(s)	42, 75, 927, 1023, 1031
ZrmI	AGTACT	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.