Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015464

Physical Location & Seq

Genomic Coordinates Forward (+)

11303562 .. 11304655

Gene Structure 1094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCTGCGATTAGAGTCGATTCCGCTAAGCCGTATTTCGCTACGAGCAGTCTTGTGATTGGGTATGCTCTCTGTTCTAGCTTGTTAGCTGTGATAAACAAGTTTGCCATTACCAAATTCAACTACCCTGGCCTTTTGACTGCATTGCAGTACCTTACATCTGCTTTGGGAGTTTGGGGTTTGGGAAAGTCTGAATTTTTGCACCACGATCCCTTCACATGGCAGACGGCCAAGAAGTTTTTGCCCGCTGCACTTGTGTTTTACCTTGCTATCTTTACCAACACCAATCTTCTTCGCCATGCGAATGTGGATACGTTTATAGTGTTTAGATCATGCACGCCCCTTTTGGTTGCGCTGGCGGATACTGCTTTTAGGAAGCAGCCAATCCCATCTAAGCTTACCTTTGTATCGTTGTTGATCATTTTGGGTGGAGCTGTTGGTTATGTGGCCACTGATTCGGGTTTTACTTTGACTGCTTATTCTTGGGCGTTTGCCTATTTGGTGACCATTACAACTGAGATGGTTTACATTAAGCATATGGTCACGAATCTCGGGTTGAACACTTGGGGTTTTGTGTTGTACAACAATCTTTTGTCACTAATGATGGCTCCACCGTTTTGGATTATTACTGGAGAGTATTCTGATGTGTTTGCTGCTTTGGGATCGAATGCTGCGAATTTCTTTGAACCTGGTGCACTTTTTGCGGTCTCATTGTCGTGTGTGTTTGGATTGCTCATCAGTTTCTTTGGGTTTGCAGCAAGGAAGGCAATCTCTGCTACCGCATTCACAGTGACTGGTGTTGTGAATAAGTTTCTTACAGTTGCCATCAATGTGCTAATTTGGGATAAGCATGCCAGTCCATTCGGTTTGCTCTGCCTCCTCTTAACAATCGTAGGGGGTGTTCTTTATCAGCAGTCTGTAACTGGAGTAAGCAGTGCTCCGTCACAGCGGGAAACGACATTTCCAAAGAAAATGAAGGGAAGGCAGCCTCCGGTAAACTTGCTTCTAAATGAGAATTCCGTTCATACTTTGGCATTTTGTAGCTGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015783 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

351

Amino Acids

38.16

Weight (kDa)

9.26

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	24 - 303	6.3e-15	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19980
fragaria_vesca	FvH4_2g20640 FvH4_6g29120
malus_domestica	MD15G1180200.v1.1
prunus_persica	Prupe.7G236300_v2.0.a1
pyrus_communis	pycom02g03270 pycom15g16160
rosa_chinensis	RchiOBHm_Chr2g0089551
rosa_laevigata	RLG00000016039
rosa_multiflora	Rmu_sc0006193.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151830
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2AG046900 Rh2BG045700 Rh2CG047400 Rh2DG046900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	24, 246, 359, 704, 780, 949
AclWI	GGATC	2 cut(s)	203, 670
AcoI	YGGCCR	2 cut(s)	228, 447
AcsI	RAATTY	4 cut(s)	116, 194, 676, 1015
AfaI	GTAC	2 cut(s)	152, 581
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	3 cut(s)	121, 559, 686
AjnI	CCWGG	2 cut(s)	127, 688
AluBI	AGCT	5 cut(s)	81, 89, 397, 434, 1044
AluI	AGCT	5 cut(s)	81, 89, 397, 434, 1044
Alw21I	GWGCWC	2 cut(s)	697, 940
Alw26I	GTCTC	1 cut(s)	712
Alw44I	GTGCAC	1 cut(s)	693
AlwI	GGATC	2 cut(s)	203, 670
AlwNI	CAGNNNCTG	1 cut(s)	794
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	3 cut(s)	130, 228, 447
ApaLI	GTGCAC	1 cut(s)	693
ApeKI	GCWGC	7 cut(s)	248, 379, 653, 671, 755, 985, 1044
ApoI	RAATTY	4 cut(s)	116, 194, 676, 1015
AspLEI	GCGC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	697
BaeI	ACNNNNGTAYC	2 cut(s)	390, 423
BalI	TGGCCA	1 cut(s)	449
BarI	GAAGNNNNNNTAC	2 cut(s)	987, 1019
Bbv12I	GWGCWC	2 cut(s)	697, 940
BbvI	GCAGC	7 cut(s)	235, 391, 640, 658, 767, 997, 1031
BccI	CCATC	4 cut(s)	397, 514, 598, 833
BceAI	ACGGC	2 cut(s)	16, 243
BciT130I	CCWGG	2 cut(s)	129, 690
BciVI	GTATCC	2 cut(s)	304, 355
BclI	TGATCA	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	712
BfaI	CTAG	1 cut(s)	78
BfuI	GTATCC	2 cut(s)	304, 355
BisI	GCNGC	7 cut(s)	249, 380, 654, 672, 756, 986, 1045
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	7 cut(s)	250, 381, 655, 673, 757, 987, 1046
Bme1390I	CCNGG	2 cut(s)	129, 690
BmeT110I	CYCGRG	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	2 cut(s)	129, 690
BpmI	CTGGAG	2 cut(s)	651, 945
Bpu1102I	GCTNAGC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	991
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	4 cut(s)	634, 799, 855, 928
Bse3DI	GCAATG	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	129, 690
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	4 cut(s)	634, 799, 855, 928
BseRI	GAGGAG	1 cut(s)	869
BseSI	GKGCMC	1 cut(s)	697
BseXI	GCAGC	7 cut(s)	235, 391, 640, 658, 767, 997, 1031
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	132, 230, 449
BsiHKAI	GWGCWC	2 cut(s)	697, 940
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	992
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	712
BsmI	GAATGC	2 cut(s)	673, 782
BsnI	GGCC	3 cut(s)	132, 230, 449
Bso31I	GGTCTC	1 cut(s)	712
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	697, 940
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	208, 329, 417, 662
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	6 cut(s)	24, 246, 359, 704, 780, 949
BspANI	GGCC	3 cut(s)	132, 230, 449
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	609
BspPI	GGATC	2 cut(s)	203, 670
BspTNI	GGTCTC	1 cut(s)	712
BsrDI	GCAATG	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	4 cut(s)	634, 799, 855, 928
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	4 cut(s)	208, 329, 417, 662
Bst2UI	CCWGG	2 cut(s)	129, 690
Bst4CI	ACNGT	3 cut(s)	615, 790, 820
BstAPI	GCANNNNNTGC	2 cut(s)	701, 773
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	246, 338, 357, 852
BstDEI	CTNAG	3 cut(s)	27, 393, 516
BstEII	GGTNACC	1 cut(s)	502
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	4 cut(s)	211, 332, 420, 665
BstMAI	GTCTC	1 cut(s)	712
BstMBI	GATC	4 cut(s)	208, 329, 417, 662
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 701, 764, 773
BstNI	CCWGG	2 cut(s)	129, 690
BstNSI	RCATGY	1 cut(s)	854
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	127, 688
BstSLI	GKGCMC	1 cut(s)	697
BstV1I	GCAGC	7 cut(s)	235, 391, 640, 658, 767, 997, 1031
BstXI	CCANNNNNNTGG	1 cut(s)	618
BsuI	GTATCC	2 cut(s)	304, 355
BsuRI	GGCC	3 cut(s)	132, 230, 449
BtsI	GCAGTG	1 cut(s)	940
BtsIMutI	CAGTG	3 cut(s)	450, 795, 940
Cac8I	GCNNGC	4 cut(s)	246, 338, 357, 852
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	1 cut(s)	355
CsiI	ACCWGGT	1 cut(s)	688
Csp6I	GTAC	2 cut(s)	151, 580
CviAII	CATG	4 cut(s)	219, 299, 333, 851
CviQI	GTAC	2 cut(s)	151, 580
DdeI	CTNAG	3 cut(s)	27, 393, 516
DpnI	GATC	4 cut(s)	210, 331, 419, 664
DpnII	GATC	4 cut(s)	208, 329, 417, 662
EaeI	YGGCCR	2 cut(s)	228, 447
EciI	GGCGGA	1 cut(s)	374
Eco31I	GGTCTC	1 cut(s)	712
Eco88I	CYCGRG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	502
EcoO65I	GGTNACC	1 cut(s)	502
EcoRI	GAATTC	1 cut(s)	1015
EcoRII	CCWGG	2 cut(s)	127, 688
FaeI	CATG	4 cut(s)	222, 302, 336, 854
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	4 cut(s)	218, 298, 332, 850
FauI	CCCGC	2 cut(s)	253, 942
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	417
Fnu4HI	GCNGC	7 cut(s)	249, 380, 654, 672, 756, 986, 1045
Fsp4HI	GCNGC	7 cut(s)	249, 380, 654, 672, 756, 986, 1045
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	7 cut(s)	249, 380, 654, 672, 756, 986, 1045
GsuI	CTGGAG	2 cut(s)	651, 945
HaeIII	GGCC	3 cut(s)	132, 230, 449
HapII	CCGG	1 cut(s)	992
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	4 cut(s)	222, 302, 336, 854
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	4 cut(s)	15, 20, 455, 547
HpaII	CCGG	1 cut(s)	992
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	3 cut(s)	526, 695, 997
Hpy188I	TCNGA	2 cut(s)	193, 643
Hpy188III	TCNNGA	1 cut(s)	544
Hpy8I	GTNNAC	3 cut(s)	526, 695, 997
HpyAV	CCTTC	4 cut(s)	223, 757, 970, 975
HpyCH4III	ACNGT	3 cut(s)	615, 790, 820
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	7 cut(s)	143, 148, 202, 251, 336, 695, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 701, 764, 773
HpyF3I	CTNAG	3 cut(s)	27, 393, 516
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	4 cut(s)	222, 302, 336, 854
HspAI	GCGC	1 cut(s)	353
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	4 cut(s)	208, 329, 417, 662
LmnI	GCTCC	3 cut(s)	431, 613, 943
Lsp1109I	GCAGC	7 cut(s)	235, 391, 640, 658, 767, 997, 1031
MabI	ACCWGGT	1 cut(s)	688
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	6 cut(s)	502, 541, 594, 790, 919, 942
MalI	GATC	4 cut(s)	210, 331, 419, 664
MboI	GATC	4 cut(s)	208, 329, 417, 662
MboII	GAAGA	2 cut(s)	281, 284
MhlI	GDGCHC	2 cut(s)	697, 940
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	5 cut(s)	116, 194, 676, 837, 1015
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	3 cut(s)	887, 890, 999
Mox20I	TGGCCA	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	2 cut(s)	531, 884
MslI	CAYNNNNRTG	3 cut(s)	303, 715, 830
Msp20I	TGGCCA	1 cut(s)	449
MspA1I	CMGCKG	2 cut(s)	248, 949
MspI	CCGG	1 cut(s)	992
MspR9I	CCNGG	2 cut(s)	129, 690
Mva1269I	GAATGC	2 cut(s)	673, 782
MvaI	CCWGG	2 cut(s)	129, 690
MwoI	GCNNNNNNNGC	4 cut(s)	365, 701, 764, 773
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	4 cut(s)	208, 329, 417, 662
NlaIII	CATG	4 cut(s)	222, 302, 336, 854
NlaIV	GGNNCC	1 cut(s)	609
NmuCI	GTSAC	5 cut(s)	502, 541, 594, 790, 942
NspI	RCATGY	1 cut(s)	854
PaeI	GCATGC	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	1 cut(s)	671
PctI	GAATGC	2 cut(s)	673, 782
PfeI	GAWTC	3 cut(s)	20, 455, 547
PkrI	GCNGC	7 cut(s)	250, 381, 655, 673, 757, 987, 1046
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	127, 688
PspEI	GGTNACC	1 cut(s)	502
PspGI	CCWGG	2 cut(s)	127, 688
PspN4I	GGNNCC	1 cut(s)	609
PsrI	GAACNNNNNNTAC	2 cut(s)	885, 917
PstNI	CAGNNNCTG	1 cut(s)	794
RsaI	GTAC	2 cut(s)	152, 581
RsaNI	GTAC	2 cut(s)	151, 580
RseI	CAYNNNNRTG	3 cut(s)	303, 715, 830
SaqAI	TTAA	2 cut(s)	531, 884
SatI	GCNGC	7 cut(s)	249, 380, 654, 672, 756, 986, 1045
Sau3AI	GATC	4 cut(s)	208, 329, 417, 662
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	129, 690
SduI	GDGCHC	2 cut(s)	697, 940
SexAI	ACCWGGT	1 cut(s)	688
SmiMI	CAYNNNNRTG	3 cut(s)	303, 715, 830
SphI	GCATGC	1 cut(s)	854
Sse9I	AATT	5 cut(s)	116, 194, 676, 837, 1015
SsiI	CCGC	6 cut(s)	24, 246, 359, 704, 780, 949
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	127, 688
TaaI	ACNGT	3 cut(s)	615, 790, 820
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	18, 665
TasI	AATT	5 cut(s)	116, 194, 676, 837, 1015
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	3 cut(s)	20, 455, 547
Tru1I	TTAA	2 cut(s)	531, 884
Tru9I	TTAA	2 cut(s)	531, 884
TscAI	CASTG	3 cut(s)	457, 795, 940
TseFI	GTSAC	5 cut(s)	502, 541, 594, 790, 942
TseI	GCWGC	7 cut(s)	248, 379, 653, 671, 755, 985, 1044
Tsp45I	GTSAC	5 cut(s)	502, 541, 594, 790, 942
TspDTI	ATGAA	2 cut(s)	989, 1013
TspGWI	ACGGA	2 cut(s)	930, 1009
TspRI	CASTG	3 cut(s)	457, 795, 940
VneI	GTGCAC	1 cut(s)	693
XapI	RAATTY	4 cut(s)	116, 194, 676, 1015
XceI	RCATGY	1 cut(s)	854
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.