Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015464

Physical Location & Seq

Genomic Coordinates Forward (+)

22463892 .. 22465679

Gene Structure 1788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCTGCGATTAGAGTTGATCCTAAGCAGTACTACGCCACTAGTAGTCTTCTCATTGGCTATGCACTCTGTTCTAGCTTGTTAGCTGTGATAAACAAGTTTGCCATCACCAAATTCAACTACCCTGGTCTTTTGACCGCTCTGCAGTACCTCACTTCTGCTTTGGGGGTTTGGGTTTTGGGGAAGTTGGGGTTTTTGCACCATGATGCATTCACATGGGAAACGGCTAAGAAGTTCTTGCCTGCTGCTGTTGTGTTTTATCTTGCCATTTTCACCAATACTAATCTGCTTCGACATGCCAATGTGGATACTTTTATAGTGTTCCGGTCGTGTACGCCTATTTTGGTTGCGCTGGCTGATACGGTGTTTAGGAACCAGAAGTGCCCGTCAAAGCTTACGTTTCTGTCTTTGTTGGTGATTTTGGGGGGAGCTGTTGGGTATGTGGCCACTGATAATGGTTTCACTTTAACTGCTTATTCATGGGCGTTTGCCTATTTGGTGACCATTACAACTGAGATGGTGTACATTAAGCATATGGTGACGAATCTCGGGCTGAACACTTGGGGTTTTGTGTTGTACAACAATTTATTGTCATTGATGATGGCTCCACCGTTCTGGATCATCACAGGGGAGTATGTTGAGGTGTTTGCTGCTTTGGGATCCAAGACTGAGAACTTCTTTGCACCTGGTGCATTCTTTGCAGTGTCATTGTCATGTGTGTTTGGTCTGCTCATCAGCTTTTTTGGGTTTGCAGCGAGGAAGGCAGTCTCTGCAACAGCGTTTACAGTGACTGGTGTTGTTAACAAGTTTCTTACGGTTGCTATCAATGTGATGATATGGGATAAGCATGCCAGCCCCTTTGGTTTGGTCTGCCTCCTAATGACAATCGTTGGTGGTGTCTTTTATCAGCAATCCGTAACTGGACCTAGCAGTTCCCCATCAAAGGGTGAATCAGTAGTGCCTAAGCAGACTCACAGTGAGAATGAGGGTGATGACTTTGATGATGAAAATCAAGGAAAAGCTGTTTCTGGTAAACTTATTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015783 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

349

Amino Acids

37.93

Weight (kDa)

8.48

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	23 - 302	2.3e-15	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19980
fragaria_vesca	FvH4_2g20640 FvH4_6g29120
malus_domestica	MD15G1180200.v1.1
prunus_persica	Prupe.7G236300_v2.0.a1
pyrus_communis	pycom02g03270 pycom15g16160
rosa_chinensis	RchiOBHm_Chr2g0089551
rosa_laevigata	RLG00000016039
rosa_multiflora	Rmu_sc0006193.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151830
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2AG046900 Rh2BG045700 Rh2CG047400 Rh2DG046900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	4 cut(s)	14, 626, 654, 667
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	113
AdeI	CACNNNGTG	1 cut(s)	689
AfaI	GTAC	5 cut(s)	32, 149, 334, 524, 578
AfiI	CCNNNNNNNGG	2 cut(s)	943, 944
AgsI	TTSAA	1 cut(s)	118
AhlI	ACTAGT	1 cut(s)	41
AjnI	CCWGG	2 cut(s)	124, 685
AluBI	AGCT	6 cut(s)	78, 86, 394, 431, 738, 1022
AluI	AGCT	6 cut(s)	78, 86, 394, 431, 738, 1022
Alw26I	GTCTC	1 cut(s)	772
AlwI	GGATC	4 cut(s)	14, 626, 654, 667
AlwNI	CAGNNNCTG	2 cut(s)	770, 791
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	1 cut(s)	444
ApeKI	GCWGC	3 cut(s)	245, 650, 752
ApoI	RAATTY	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	923
AsuHPI	GGTGA	7 cut(s)	100, 265, 427, 511, 550, 959, 1001
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	923
BaeGI	GKGCMC	1 cut(s)	386
BalI	TGGCCA	1 cut(s)	446
BamHI	GGATCC	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	232, 637, 764
BccI	CCATC	4 cut(s)	113, 511, 595, 946
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	2 cut(s)	126, 687
BciVI	GTATCC	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	772
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	3 cut(s)	42, 75, 927
BfmI	CTRYAG	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	3 cut(s)	246, 651, 753
BlsI	GCNGC	3 cut(s)	247, 652, 754
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	2 cut(s)	126, 687
Bme18I	GGWCC	1 cut(s)	923
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	923
BmiI	GGNNCC	3 cut(s)	374, 606, 661
BmrFI	CCNGG	2 cut(s)	126, 687
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	41
Bpu10I	CCTNAGC	2 cut(s)	24, 963
BsaBI	GATNNNNATC	1 cut(s)	1008
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	943, 944
Bse1I	ACTGG	2 cut(s)	796, 925
Bse8I	GATNNNNATC	1 cut(s)	1008
BseBI	CCWGG	2 cut(s)	126, 687
BseDI	CCNNGG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	1008
BseLI	CCNNNNNNNGG	2 cut(s)	943, 944
BseMII	CTCAG	2 cut(s)	504, 660
BseNI	ACTGG	2 cut(s)	796, 925
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	232, 637, 764
Bsh1285I	CGRYCG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	943, 944
BsmAI	GTCTC	1 cut(s)	772
BsmI	GAATGC	2 cut(s)	209, 692
BsnI	GGCC	1 cut(s)	446
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp1407I	TGTACA	2 cut(s)	522, 576
Bsp143I	GATC	3 cut(s)	19, 618, 659
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	446
BspCNI	CTCAG	2 cut(s)	505, 661
BspLI	GGNNCC	3 cut(s)	374, 606, 661
BspMAI	CTGCAG	1 cut(s)	147
BspPI	GGATC	4 cut(s)	14, 626, 654, 667
BsrBI	CCGCTC	1 cut(s)	140
BsrGI	TGTACA	2 cut(s)	522, 576
BsrI	ACTGG	2 cut(s)	796, 925
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	3 cut(s)	19, 618, 659
Bst2UI	CCWGG	2 cut(s)	126, 687
Bst4CI	ACNGT	5 cut(s)	364, 612, 787, 817, 977
BstAPI	GCANNNNNTGC	3 cut(s)	689, 698, 770
BstAUI	TGTACA	2 cut(s)	522, 576
BstC8I	GCNNGC	4 cut(s)	243, 354, 849, 853
BstDEI	CTNAG	5 cut(s)	24, 228, 513, 669, 963
BstEII	GGTNACC	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	3 cut(s)	22, 621, 662
BstMAI	GTCTC	1 cut(s)	772
BstMBI	GATC	3 cut(s)	19, 618, 659
BstMCI	CGRYCG	1 cut(s)	329
BstMWI	GCNNNNNNNGC	4 cut(s)	689, 698, 761, 770
BstNI	CCWGG	2 cut(s)	126, 687
BstNSI	RCATGY	2 cut(s)	299, 851
BstPI	GGTNACC	1 cut(s)	499
BstSCI	CCNGG	2 cut(s)	124, 685
BstSFI	CTRYAG	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	386
BstV1I	GCAGC	3 cut(s)	232, 637, 764
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	659
BstXI	CCANNNNNNTGG	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	659
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	446
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	4 cut(s)	447, 708, 792, 982
Cac8I	GCNNGC	4 cut(s)	243, 354, 849, 853
CaiI	CAGNNNCTG	2 cut(s)	770, 791
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	923
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	5 cut(s)	31, 148, 333, 523, 577
CviAII	CATG	6 cut(s)	203, 216, 296, 480, 714, 848
CviQI	GTAC	5 cut(s)	31, 148, 333, 523, 577
DdeI	CTNAG	5 cut(s)	24, 228, 513, 669, 963
DpnI	GATC	3 cut(s)	21, 620, 661
DpnII	GATC	3 cut(s)	19, 618, 659
DraIII	CACNNNGTG	1 cut(s)	689
EaeI	YGGCCR	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	923
Eco88I	CYCGRG	1 cut(s)	548
Eco91I	GGTNACC	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	499
EcoRII	CCWGG	2 cut(s)	124, 685
EcoT22I	ATGCAT	1 cut(s)	211
FaeI	CATG	6 cut(s)	206, 219, 299, 483, 717, 851
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	6 cut(s)	202, 215, 295, 479, 713, 847
FauNDI	CATATG	1 cut(s)	534
Fnu4HI	GCNGC	3 cut(s)	246, 651, 753
Fsp4HI	GCNGC	3 cut(s)	246, 651, 753
FspBI	CTAG	3 cut(s)	42, 75, 927
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	3 cut(s)	246, 651, 753
HaeIII	GGCC	1 cut(s)	446
HapII	CCGG	1 cut(s)	325
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	6 cut(s)	206, 219, 299, 483, 717, 851
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	3 cut(s)	544, 950, 970
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	1 cut(s)	325
HphI	GGTGA	7 cut(s)	100, 265, 427, 511, 550, 959, 1001
Hpy166II	GTNNAC	5 cut(s)	333, 523, 783, 802, 1034
Hpy188III	TCNNGA	1 cut(s)	616
Hpy8I	GTNNAC	5 cut(s)	333, 523, 783, 802, 1034
HpyAV	CCTTC	1 cut(s)	754
HpyCH4III	ACNGT	5 cut(s)	364, 612, 787, 817, 977
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	9 cut(s)	65, 145, 199, 209, 683, 692, 701, 752, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	689, 698, 761, 770
HpyF3I	CTNAG	5 cut(s)	24, 228, 513, 669, 963
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	6 cut(s)	206, 219, 299, 483, 717, 851
HspAI	GCGC	1 cut(s)	350
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	3 cut(s)	19, 618, 659
LmnI	GCTCC	2 cut(s)	428, 610
Lsp1109I	GCAGC	3 cut(s)	232, 637, 764
LweI	GCATC	1 cut(s)	196
MabI	ACCWGGT	1 cut(s)	685
MaeI	CTAG	3 cut(s)	42, 75, 927
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	4 cut(s)	499, 538, 787, 916
MalI	GATC	3 cut(s)	21, 620, 661
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	3 cut(s)	19, 618, 659
MboII	GAAGA	1 cut(s)	41
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	386
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	2 cut(s)	113, 583
MluNI	TGGCCA	1 cut(s)	446
MlyI	GAGTC	1 cut(s)	964
MnlI	CCTC	5 cut(s)	161, 634, 750, 884, 979
Mox20I	TGGCCA	1 cut(s)	446
Mph1103I	ATGCAT	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	3 cut(s)	467, 528, 801
MslI	CAYNNNNRTG	4 cut(s)	204, 214, 300, 712
Msp20I	TGGCCA	1 cut(s)	446
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	2 cut(s)	126, 687
Mva1269I	GAATGC	2 cut(s)	209, 692
MvaI	CCWGG	2 cut(s)	126, 687
MwoI	GCNNNNNNNGC	4 cut(s)	689, 698, 761, 770
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	3 cut(s)	19, 618, 659
NlaIII	CATG	6 cut(s)	206, 219, 299, 483, 717, 851
NlaIV	GGNNCC	3 cut(s)	374, 606, 661
NmuCI	GTSAC	3 cut(s)	499, 538, 787
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	2 cut(s)	299, 851
PaeI	GCATGC	1 cut(s)	851
PctI	GAATGC	2 cut(s)	209, 692
PfeI	GAWTC	2 cut(s)	544, 950
PkrI	GCNGC	3 cut(s)	247, 652, 754
PleI	GAGTC	1 cut(s)	964
PpsI	GAGTC	1 cut(s)	964
Psp6I	CCWGG	2 cut(s)	124, 685
PspEI	GGTNACC	1 cut(s)	499
PspGI	CCWGG	2 cut(s)	124, 685
PspN4I	GGNNCC	3 cut(s)	374, 606, 661
PspPI	GGNCC	1 cut(s)	923
PstI	CTGCAG	1 cut(s)	147
PstNI	CAGNNNCTG	2 cut(s)	770, 791
PsuI	RGATCY	1 cut(s)	659
RsaI	GTAC	5 cut(s)	32, 149, 334, 524, 578
RsaNI	GTAC	5 cut(s)	31, 148, 333, 523, 577
RseI	CAYNNNNRTG	4 cut(s)	204, 214, 300, 712
SaqAI	TTAA	3 cut(s)	467, 528, 801
SatI	GCNGC	3 cut(s)	246, 651, 753
Sau3AI	GATC	3 cut(s)	19, 618, 659
Sau96I	GGNCC	1 cut(s)	923
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	1 cut(s)	964
ScrFI	CCNGG	2 cut(s)	126, 687
SduI	GDGCHC	1 cut(s)	386
SexAI	ACCWGGT	1 cut(s)	685
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	923
SmiMI	CAYNNNNRTG	4 cut(s)	204, 214, 300, 712
SpeI	ACTAGT	1 cut(s)	41
SphI	GCATGC	1 cut(s)	851
Sse9I	AATT	2 cut(s)	113, 583
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	3 cut(s)	42, 75, 927
StyD4I	CCNGG	2 cut(s)	124, 685
TaaI	ACNGT	5 cut(s)	364, 612, 787, 817, 977
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	1 cut(s)	292
TasI	AATT	2 cut(s)	113, 583
TatI	WGTACW	3 cut(s)	30, 522, 576
TfiI	GAWTC	2 cut(s)	544, 950
Tru1I	TTAA	3 cut(s)	467, 528, 801
Tru9I	TTAA	3 cut(s)	467, 528, 801
TscAI	CASTG	4 cut(s)	454, 708, 792, 982
TseFI	GTSAC	3 cut(s)	499, 538, 787
TseI	GCWGC	3 cut(s)	245, 650, 752
Tsp45I	GTSAC	3 cut(s)	499, 538, 787
TspDTI	ATGAA	2 cut(s)	468, 1020
TspGWI	ACGGA	1 cut(s)	904
TspRI	CASTG	4 cut(s)	454, 708, 792, 982
VpaK11BI	GGWCC	1 cut(s)	923
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	2 cut(s)	299, 851
XspI	CTAG	3 cut(s)	42, 75, 927
ZrmI	AGTACT	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.