MD15G1180200.v1.1

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015464
Physical Location & Seq
Forward (+)
14182832 .. 14183884
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1180200.v1.1.491

Sequence Viewer

Length: 1053 bp
ATGTCTGCGATTAGAGTTGATTCCGCTAAGCCGTATTTCGCTACGAGCAGTCTTGTGATTGGGTATGCTCTCTGTTCTAGCTTGTTAGCTGTGATAAACAAGTTTGCCATTACCAAATTCAACTACCCTGGCCTTTTGACTGCATTGCAGTACCTTACATCTGCTTTGGGAGTTTGGGGTTTGGGAAAGTCGGGATTTTTGCACCACGATCCCTTCACATGGCAGACGGCCAAGAAGTTTTTGCCCGCCGCACTTGTGTTTTACCTTGCTATCTTTACCAACACCAATCTTCTTCGCCATGCGAATGTGGATACGTTTATAGTGTTTAGATCCTGCACGCCCCTTTTGGTTGCGCTGGCGGATACTGCTTTTAGGAAGCAGCCAATCCCATCTAAGCTTACCTTTGTATCGTTGTTGATCATTTTGGGTGGAGCTGTTGGTTATGTGGCCACTGATTCGGGTTTTACTTTGACTGCATATTCGTGGGCGTTTGCCTATTTGGTGACCATTACAACTGAGATGGTTTATATTAAGCATATGGTCACGAATCTCGGGTTGAACACTTGGGGTTTTGTGTTGTACAACAATCTTTTGTCACTGATGATGGCTCCACCATTTTGGATTATTACTGGAGAGTATTCTGATGTGTTTGCTGCTTTGGGATCAAATGCTGCGAATTTCTTTGAACCTGGTGCACTTTTCGCGGTCTCATTATCTTGTGTGTTTGGATTGCTCATCAGTTTCTTTGGGTTTGCAGCAAGGAAGGCAATCTCTGCTACCGCATTCACAGTGACTGGTGTTGTGAATAAGTTTCTTACGGTTGCCATCAATGTGCTAATTTGGGATAAGCATGCCAGTCCATTCGGTTTGCTCTGCCTCCTCTTAACAATCGTAGGGGGTATTCTTTATCAGCAGTCCGTAACTGGAGTAAGCATTGCTCCATCACAGCGTGAAACAACGGTGTCTAAACAACCTCTCGGTGAGAGTGATGGTGATGAATTTTCCGAAGAAAATCAAGGGAAGGCAGTTTCCGGTAAACTTGCTTCTAAATGA

Protein Analysis

351

Amino Acids

37.8

Weight (kDa)

8.93

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 24 - 303 4e-15 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19980
fragaria_vesca FvH4_2g20640 FvH4_6g29120
malus_domestica MD15G1180200.v1.1
prunus_persica Prupe.7G236300_v2.0.a1
pyrus_communis pycom02g03270 pycom15g16160
rosa_chinensis RchiOBHm_Chr2g0089551
rosa_laevigata RLG00000016039
rosa_multiflora Rmu_sc0006193.1_g000006
rosa_roxburghii Rroxscaffold_2G00151830
rosa_rugosa Rorug02G0001500
rosa_samantha Rh2AG046900 Rh2BG045700 Rh2CG047400 Rh2DG046900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 704
AciI CCGC 6 cut(s) 24, 246, 249, 359, 704, 780
AclWI GGATC 3 cut(s) 203, 324, 670
AcoI YGGCCR 2 cut(s) 228, 447
AcsI RAATTY 3 cut(s) 116, 676, 998
AdeI CACNNNGTG 1 cut(s) 950
AfaI GTAC 2 cut(s) 152, 581
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 3 cut(s) 121, 559, 686
AjnI CCWGG 2 cut(s) 127, 688
AluBI AGCT 4 cut(s) 81, 89, 397, 434
AluI AGCT 4 cut(s) 81, 89, 397, 434
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 1 cut(s) 712
Alw44I GTGCAC 1 cut(s) 693
AlwI GGATC 3 cut(s) 203, 324, 670
AlwNI CAGNNNCTG 1 cut(s) 794
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 3 cut(s) 130, 228, 447
ApaLI GTGCAC 1 cut(s) 693
ApeKI GCWGC 4 cut(s) 379, 653, 671, 755
ApoI RAATTY 3 cut(s) 116, 676, 998
ArsI GACNNNNNNTTYG 2 cut(s) 463, 495
AspLEI GCGC 1 cut(s) 355
AsuHPI GGTGA 3 cut(s) 514, 992, 1004
AvaI CYCGRG 1 cut(s) 551
BaeGI GKGCMC 1 cut(s) 697
BaeI ACNNNNGTAYC 2 cut(s) 390, 423
BalI TGGCCA 1 cut(s) 449
BarI GAAGNNNNNNTAC 1 cut(s) 1027
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 4 cut(s) 391, 640, 658, 767
BccI CCATC 6 cut(s) 397, 514, 598, 833, 949, 983
BceAI ACGGC 2 cut(s) 16, 243
BciT130I CCWGG 2 cut(s) 129, 690
BciVI GTATCC 2 cut(s) 304, 355
BclI TGATCA 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 712
BfaI CTAG 1 cut(s) 78
BfuI GTATCC 2 cut(s) 304, 355
BisI GCNGC 5 cut(s) 249, 380, 654, 672, 756
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 5 cut(s) 250, 381, 655, 673, 757
Bme1390I CCNGG 2 cut(s) 129, 690
BmeT110I CYCGRG 1 cut(s) 551
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 2 cut(s) 129, 690
BpmI CTGGAG 2 cut(s) 651, 945
Bpu1102I GCTNAGC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 1031
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 4 cut(s) 634, 799, 855, 928
Bse3DI GCAATG 2 cut(s) 143, 933
BseBI CCWGG 2 cut(s) 129, 690
BseDI CCNNGG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 2 cut(s) 143, 933
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 4 cut(s) 634, 799, 855, 928
BseRI GAGGAG 1 cut(s) 869
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 4 cut(s) 391, 640, 658, 767
BsgI GTGCAG 1 cut(s) 319
Bsh1236I CGCG 1 cut(s) 704
BshFI GGCC 3 cut(s) 132, 230, 449
BsiHKAI GWGCWC 1 cut(s) 697
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 1 cut(s) 1032
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 712
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 3 cut(s) 132, 230, 449
Bso31I GGTCTC 1 cut(s) 712
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 697
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 4 cut(s) 208, 329, 417, 662
Bsp1720I GCTNAGC 1 cut(s) 27
BspACI CCGC 6 cut(s) 24, 246, 249, 359, 704, 780
BspANI GGCC 3 cut(s) 132, 230, 449
BspCNI CTCAG 1 cut(s) 508
BspFNI CGCG 1 cut(s) 704
BspLI GGNNCC 1 cut(s) 609
BspPI GGATC 3 cut(s) 203, 324, 670
BspTNI GGTCTC 1 cut(s) 712
BsrDI GCAATG 2 cut(s) 143, 933
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 4 cut(s) 634, 799, 855, 928
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 4 cut(s) 208, 329, 417, 662
Bst2UI CCWGG 2 cut(s) 129, 690
Bst4CI ACNGT 3 cut(s) 790, 820, 961
BstAPI GCANNNNNTGC 1 cut(s) 773
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 4 cut(s) 246, 338, 357, 852
BstDEI CTNAG 3 cut(s) 27, 393, 516
BstEII GGTNACC 1 cut(s) 502
BstFNI CGCG 1 cut(s) 704
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 4 cut(s) 211, 332, 420, 665
BstMAI GTCTC 1 cut(s) 712
BstMBI GATC 4 cut(s) 208, 329, 417, 662
BstMWI GCNNNNNNNGC 4 cut(s) 365, 701, 764, 773
BstNI CCWGG 2 cut(s) 129, 690
BstNSI RCATGY 1 cut(s) 854
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 2 cut(s) 127, 688
BstSLI GKGCMC 1 cut(s) 697
BstUI CGCG 1 cut(s) 704
BstV1I GCAGC 4 cut(s) 391, 640, 658, 767
BstX2I RGATCY 1 cut(s) 329
BstXI CCANNNNNNTGG 1 cut(s) 618
BstYI RGATCY 1 cut(s) 329
BsuI GTATCC 2 cut(s) 304, 355
BsuRI GGCC 3 cut(s) 132, 230, 449
BtsIMutI CAGTG 3 cut(s) 450, 596, 795
Cac8I GCNNGC 4 cut(s) 246, 338, 357, 852
CaiI CAGNNNCTG 1 cut(s) 794
CfoI GCGC 1 cut(s) 355
CsiI ACCWGGT 1 cut(s) 688
Csp6I GTAC 2 cut(s) 151, 580
CviAII CATG 3 cut(s) 219, 299, 851
CviQI GTAC 2 cut(s) 151, 580
DdeI CTNAG 3 cut(s) 27, 393, 516
DpnI GATC 4 cut(s) 210, 331, 419, 664
DpnII GATC 4 cut(s) 208, 329, 417, 662
DraIII CACNNNGTG 1 cut(s) 950
EaeI YGGCCR 2 cut(s) 228, 447
EciI GGCGGA 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 712
Eco88I CYCGRG 1 cut(s) 551
Eco91I GGTNACC 1 cut(s) 502
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 2 cut(s) 127, 688
FaeI CATG 3 cut(s) 222, 302, 854
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 3 cut(s) 218, 298, 850
FauI CCCGC 1 cut(s) 253
FauNDI CATATG 1 cut(s) 537
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 5 cut(s) 249, 380, 654, 672, 756
Fsp4HI GCNGC 5 cut(s) 249, 380, 654, 672, 756
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 354
GluI GCNGC 5 cut(s) 249, 380, 654, 672, 756
GsuI CTGGAG 2 cut(s) 651, 945
HaeIII GGCC 3 cut(s) 132, 230, 449
HapII CCGG 1 cut(s) 1032
HhaI GCGC 1 cut(s) 355
Hin1II CATG 3 cut(s) 222, 302, 854
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 3 cut(s) 20, 455, 547
HpaII CCGG 1 cut(s) 1032
HphI GGTGA 3 cut(s) 514, 992, 1004
Hpy166II GTNNAC 2 cut(s) 695, 1037
Hpy188I TCNGA 2 cut(s) 643, 1006
Hpy188III TCNNGA 2 cut(s) 192, 544
Hpy8I GTNNAC 2 cut(s) 695, 1037
HpyAV CCTTC 3 cut(s) 223, 757, 1015
HpyCH4III ACNGT 3 cut(s) 790, 820, 961
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 7 cut(s) 143, 148, 202, 336, 476, 695, 755
HpyF10VI GCNNNNNNNGC 4 cut(s) 365, 701, 764, 773
HpyF3I CTNAG 3 cut(s) 27, 393, 516
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 3 cut(s) 222, 302, 854
HspAI GCGC 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 4 cut(s) 208, 329, 417, 662
LmnI GCTCC 3 cut(s) 431, 613, 943
Lsp1109I GCAGC 4 cut(s) 391, 640, 658, 767
MabI ACCWGGT 1 cut(s) 688
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 5 cut(s) 502, 541, 594, 790, 919
MalI GATC 4 cut(s) 210, 331, 419, 664
MboI GATC 4 cut(s) 208, 329, 417, 662
MboII GAAGA 3 cut(s) 281, 284, 1019
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 697
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 4 cut(s) 116, 676, 837, 998
MluNI TGGCCA 1 cut(s) 449
MnlI CCTC 3 cut(s) 887, 890, 984
Mox20I TGGCCA 1 cut(s) 449
MscI TGGCCA 1 cut(s) 449
MseI TTAA 2 cut(s) 531, 884
MslI CAYNNNNRTG 3 cut(s) 303, 481, 830
Msp20I TGGCCA 1 cut(s) 449
MspI CCGG 1 cut(s) 1032
MspR9I CCNGG 2 cut(s) 129, 690
Mva1269I GAATGC 1 cut(s) 782
MvaI CCWGG 2 cut(s) 129, 690
MvnI CGCG 1 cut(s) 704
MwoI GCNNNNNNNGC 4 cut(s) 365, 701, 764, 773
NdeI CATATG 1 cut(s) 537
NdeII GATC 4 cut(s) 208, 329, 417, 662
NlaIII CATG 3 cut(s) 222, 302, 854
NlaIV GGNNCC 1 cut(s) 609
NmuCI GTSAC 4 cut(s) 502, 541, 594, 790
NspI RCATGY 1 cut(s) 854
PaeI GCATGC 1 cut(s) 854
PctI GAATGC 1 cut(s) 782
PfeI GAWTC 3 cut(s) 20, 455, 547
PkrI GCNGC 5 cut(s) 250, 381, 655, 673, 757
Psp6I CCWGG 2 cut(s) 127, 688
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 2 cut(s) 127, 688
PspN4I GGNNCC 1 cut(s) 609
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 1 cut(s) 329
RsaI GTAC 2 cut(s) 152, 581
RsaNI GTAC 2 cut(s) 151, 580
RseI CAYNNNNRTG 3 cut(s) 303, 481, 830
SaqAI TTAA 2 cut(s) 531, 884
SatI GCNGC 5 cut(s) 249, 380, 654, 672, 756
Sau3AI GATC 4 cut(s) 208, 329, 417, 662
ScrFI CCNGG 2 cut(s) 129, 690
SduI GDGCHC 1 cut(s) 697
SexAI ACCWGGT 1 cut(s) 688
SmiMI CAYNNNNRTG 3 cut(s) 303, 481, 830
SphI GCATGC 1 cut(s) 854
Sse9I AATT 4 cut(s) 116, 676, 837, 998
SsiI CCGC 6 cut(s) 24, 246, 249, 359, 704, 780
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 127, 688
TaaI ACNGT 3 cut(s) 790, 820, 961
TaiI ACGT 1 cut(s) 317
TasI AATT 4 cut(s) 116, 676, 837, 998
TatI WGTACW 1 cut(s) 579
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 3 cut(s) 20, 455, 547
Tru1I TTAA 2 cut(s) 531, 884
Tru9I TTAA 2 cut(s) 531, 884
TscAI CASTG 3 cut(s) 457, 603, 795
TseFI GTSAC 4 cut(s) 502, 541, 594, 790
TseI GCWGC 4 cut(s) 379, 653, 671, 755
Tsp45I GTSAC 4 cut(s) 502, 541, 594, 790
TspDTI ATGAA 1 cut(s) 1011
TspGWI ACGGA 1 cut(s) 907
TspRI CASTG 3 cut(s) 457, 603, 795
VneI GTGCAC 1 cut(s) 693
XapI RAATTY 3 cut(s) 116, 676, 998
XceI RCATGY 1 cut(s) 854
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.