Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015464

Physical Location & Seq

Genomic Coordinates Reverse (-)

20518944 .. 20520963

Gene Structure 2020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G236300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCTTCTATTAGAGTTGATTCAACTAAGCCGTACTTCGCCACGAGCAGTCTCGTGGTTGGGTATGCACTCTGTTCCAGCTTGTTAGCTGTGATAAACAAGTTTGCCATTACCAAATTCAACTACCCTGGCCTTTTGACCGCACTGCAATACCTTACTTCTGCATTGGGAGTTTGGGCTCTGGGAAAGTTTGGATTTTTACACCATGATCCCTTCTCACTCCAGACGGCCAAGAAGTTTTTGCCTGCTGCCTTTGTGTTCTACCTTGCAATCTTTACCAACACTAATCTTCTTCGCCATGCCAATGTGGATACGTTTATAGTGTTTAGATCATGCACACCCCTTTTGGTTGCGCTAGCGGATACTGCCTTTAGGAAACAGCCAATCCCATCTAAGCTTACCTTTGTGTCGTTGTTGATCATTTTGGGCGGAGCTGTTGGCTATGTGGCCACTGATTCGGGTTTCACTCTGACCGCTTATTCATGGGCATTTGCATATTTGGTGACCATTACAACTGAGATGGTTTATATTAAACATATGGTCACTAATCTCGGGTTGAACACCTGGGGTTTTGTGTTGTACAACAATCTGTTGTCACTAATGATGGCCCCACCGTTTTGGATTATAACGGGAGAGTATGCTGAAGTGTTTGGTGCTTTGGGATCGAATGCTGCGAATTTCTTTGAACCCGGTGCACTTTTCGCGGTCTCACTGTCGTGTGTGTTTGGATTGCTCATCAGTTTCTTTGGGTTTGCAGCTAGGAAGGCAATCTCTGCAACAGCATTTACAGTGACTGGTGTTGTTAATAAGTTTCTTACGGTTGCCATCAATGTGCTGATTTGGGATAAGCATGCCAGTCCTTTTGGTTTGCTCTGCCTCCTCTTAACAATTGTAGGGGGTGTTCTTTATCAGCAGTCAGTGACTGGAGCTGGCAGTGCCCCATCCCAGCGCGAAACAGCAGTGTCTAAGCAGACTCCCGTTGAGAATGATGGTGATGACTTTCCTGAAGAAAATCAAGGGAAGGCAGTTTCTGGTAAACTTGCTTCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015783 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

351

Amino Acids

37.73

Weight (kDa)

8.78

Isoelectric Point (pI)

29.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19980
fragaria_vesca	FvH4_2g20640 FvH4_6g29120
malus_domestica	MD15G1180200.v1.1
prunus_persica	Prupe.7G236300_v2.0.a1
pyrus_communis	pycom02g03270 pycom15g16160
rosa_chinensis	RchiOBHm_Chr2g0089551
rosa_laevigata	RLG00000016039
rosa_multiflora	Rmu_sc0006193.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151830
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2AG046900 Rh2BG045700 Rh2CG047400 Rh2DG046900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
AccII	CGCG	2 cut(s)	704, 951
AciI	CCGC	5 cut(s)	141, 359, 429, 474, 704
AclWI	GGATC	2 cut(s)	203, 670
AcoI	YGGCCR	2 cut(s)	228, 447
AcsI	RAATTY	2 cut(s)	116, 676
AcuI	CTGAAG	2 cut(s)	663, 1026
AfaI	GTAC	2 cut(s)	35, 581
AgsI	TTSAA	4 cut(s)	24, 121, 559, 686
AjnI	CCWGG	2 cut(s)	127, 563
AleI	CACNNNNGTG	1 cut(s)	715
AluBI	AGCT	6 cut(s)	81, 89, 397, 434, 758, 929
AluI	AGCT	6 cut(s)	81, 89, 397, 434, 758, 929
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	2 cut(s)	56, 712
Alw44I	GTGCAC	1 cut(s)	693
AlwI	GGATC	2 cut(s)	203, 670
AlwNI	CAGNNNCTG	3 cut(s)	794, 923, 1031
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	4 cut(s)	130, 228, 447, 606
ApaLI	GTGCAC	1 cut(s)	693
ApeKI	GCWGC	3 cut(s)	248, 671, 755
ApoI	RAATTY	2 cut(s)	116, 676
AspLEI	GCGC	2 cut(s)	355, 951
AspS9I	GGNCC	1 cut(s)	607
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	2 cut(s)	514, 1004
AsuNHI	GCTAGC	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	551
BaeGI	GKGCMC	2 cut(s)	697, 940
BalI	TGGCCA	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	181
BarI	GAAGNNNNNNTAC	1 cut(s)	1027
BauI	CACGAG	2 cut(s)	43, 53
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	3 cut(s)	235, 658, 767
BccI	CCATC	6 cut(s)	397, 514, 598, 833, 949, 983
BceAI	ACGGC	2 cut(s)	16, 243
BciT130I	CCWGG	2 cut(s)	129, 565
BciVI	GTATCC	2 cut(s)	304, 355
BclI	TGATCA	1 cut(s)	417
BcnI	CCSGG	1 cut(s)	690
BcoDI	GTCTC	2 cut(s)	56, 712
BfaI	CTAG	2 cut(s)	356, 759
BfuI	GTATCC	2 cut(s)	304, 355
BisI	GCNGC	3 cut(s)	249, 672, 756
BlsI	GCNGC	3 cut(s)	250, 673, 757
Bme1390I	CCNGG	3 cut(s)	129, 565, 690
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	3 cut(s)	129, 565, 690
BmtI	GCTAGC	1 cut(s)	359
BpmI	CTGGAG	2 cut(s)	206, 945
BpuMI	CCSGG	1 cut(s)	690
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	2 cut(s)	127, 564
Bse1I	ACTGG	3 cut(s)	799, 855, 928
BseBI	CCWGG	2 cut(s)	129, 565
BseDI	CCNNGG	2 cut(s)	127, 564
BseGI	GGATG	1 cut(s)	941
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	3 cut(s)	799, 855, 928
BseRI	GAGGAG	1 cut(s)	869
BseSI	GKGCMC	2 cut(s)	697, 940
BseXI	GCAGC	3 cut(s)	235, 658, 767
BseYI	CCCAGC	1 cut(s)	945
Bsh1236I	CGCG	2 cut(s)	704, 951
BshFI	GGCC	4 cut(s)	132, 230, 449, 608
BsiHKAI	GWGCWC	1 cut(s)	697
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	690
BsmAI	GTCTC	2 cut(s)	56, 712
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	4 cut(s)	132, 230, 449, 608
Bso31I	GGTCTC	1 cut(s)	712
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	3 cut(s)	181, 697, 940
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	208, 329, 417, 662
BspACI	CCGC	5 cut(s)	141, 359, 429, 474, 704
BspANI	GGCC	4 cut(s)	132, 230, 449, 608
BspCNI	CTCAG	1 cut(s)	508
BspFNI	CGCG	2 cut(s)	704, 951
BspLI	GGNNCC	1 cut(s)	609
BspOI	GCTAGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	203, 670
BspTNI	GGTCTC	1 cut(s)	712
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	3 cut(s)	799, 855, 928
BssECI	CCNNGG	2 cut(s)	127, 564
BssMI	GATC	4 cut(s)	208, 329, 417, 662
BssSI	CACGAG	2 cut(s)	43, 53
Bst2BI	CACGAG	2 cut(s)	43, 53
Bst2UI	CCWGG	2 cut(s)	129, 565
Bst4CI	ACNGT	4 cut(s)	615, 714, 790, 820
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	246, 357, 852, 931
BstDEI	CTNAG	4 cut(s)	27, 393, 516, 966
BstEII	GGTNACC	1 cut(s)	502
BstF5I	GGATG	1 cut(s)	941
BstFNI	CGCG	2 cut(s)	704, 951
BstHHI	GCGC	2 cut(s)	355, 951
BstKTI	GATC	4 cut(s)	211, 332, 420, 665
BstMAI	GTCTC	2 cut(s)	56, 712
BstMBI	GATC	4 cut(s)	208, 329, 417, 662
BstMWI	GCNNNNNNNGC	5 cut(s)	365, 701, 764, 773, 935
BstNI	CCWGG	2 cut(s)	129, 565
BstNSI	RCATGY	1 cut(s)	854
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	3 cut(s)	127, 563, 688
BstSLI	GKGCMC	2 cut(s)	697, 940
BstUI	CGCG	2 cut(s)	704, 951
BstV1I	GCAGC	3 cut(s)	235, 658, 767
BstXI	CCANNNNNNTGG	1 cut(s)	618
BsuI	GTATCC	2 cut(s)	304, 355
BsuRI	GGCC	4 cut(s)	132, 230, 449, 608
BtsCI	GGATG	1 cut(s)	941
BtsI	GCAGTG	3 cut(s)	143, 940, 966
BtsIMutI	CAGTG	7 cut(s)	143, 450, 710, 795, 924, 940, 966
Cac8I	GCNNGC	4 cut(s)	246, 357, 852, 931
CaiI	CAGNNNCTG	3 cut(s)	794, 923, 1031
CfoI	GCGC	2 cut(s)	355, 951
Cfr13I	GGNCC	1 cut(s)	607
Csp6I	GTAC	2 cut(s)	34, 580
CviAII	CATG	5 cut(s)	206, 299, 333, 483, 851
CviQI	GTAC	2 cut(s)	34, 580
DdeI	CTNAG	4 cut(s)	27, 393, 516, 966
DpnI	GATC	4 cut(s)	210, 331, 419, 664
DpnII	GATC	4 cut(s)	208, 329, 417, 662
EaeI	YGGCCR	2 cut(s)	228, 447
EciI	GGCGGA	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	712
Eco57I	CTGAAG	2 cut(s)	663, 1026
Eco88I	CYCGRG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	502
EcoO65I	GGTNACC	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	127, 563
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	5 cut(s)	209, 302, 336, 486, 854
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 386, 418
FatI	CATG	5 cut(s)	205, 298, 332, 482, 850
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	417
Fnu4HI	GCNGC	3 cut(s)	249, 672, 756
FokI	GGATG	1 cut(s)	928
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	3 cut(s)	249, 672, 756
FspBI	CTAG	2 cut(s)	356, 759
GlaI	GCGC	2 cut(s)	354, 950
GluI	GCNGC	3 cut(s)	249, 672, 756
GsaI	CCCAGC	1 cut(s)	949
GsuI	CTGGAG	2 cut(s)	206, 945
HaeIII	GGCC	4 cut(s)	132, 230, 449, 608
HapII	CCGG	1 cut(s)	690
HhaI	GCGC	2 cut(s)	355, 951
Hin1II	CATG	5 cut(s)	209, 302, 336, 486, 854
Hin6I	GCGC	2 cut(s)	353, 949
HinP1I	GCGC	2 cut(s)	353, 949
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	3 cut(s)	20, 455, 973
HpaII	CCGG	1 cut(s)	690
HphI	GGTGA	2 cut(s)	514, 1004
Hpy166II	GTNNAC	2 cut(s)	695, 1037
Hpy188I	TCNGA	1 cut(s)	471
Hpy188III	TCNNGA	2 cut(s)	223, 1004
Hpy8I	GTNNAC	2 cut(s)	695, 1037
HpyAV	CCTTC	3 cut(s)	223, 757, 1015
HpyCH4III	ACNGT	4 cut(s)	615, 714, 790, 820
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	9 cut(s)	68, 148, 164, 269, 336, 494, 695, 755, 776
HpyF10VI	GCNNNNNNNGC	5 cut(s)	365, 701, 764, 773, 935
HpyF3I	CTNAG	4 cut(s)	27, 393, 516, 966
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	5 cut(s)	209, 302, 336, 486, 854
HspAI	GCGC	2 cut(s)	353, 949
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	4 cut(s)	208, 329, 417, 662
LmnI	GCTCC	2 cut(s)	431, 926
Lsp1109I	GCAGC	3 cut(s)	235, 658, 767
MaeI	CTAG	2 cut(s)	356, 759
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	5 cut(s)	502, 541, 594, 790, 919
MalI	GATC	4 cut(s)	210, 331, 419, 664
MboI	GATC	4 cut(s)	208, 329, 417, 662
MboII	GAAGA	3 cut(s)	281, 284, 1019
MfeI	CAATTG	1 cut(s)	888
MhlI	GDGCHC	3 cut(s)	181, 697, 940
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	3 cut(s)	116, 676, 888
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	967
MnlI	CCTC	2 cut(s)	887, 890
Mox20I	TGGCCA	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	3 cut(s)	531, 804, 884
MslI	CAYNNNNRTG	3 cut(s)	303, 715, 830
Msp20I	TGGCCA	1 cut(s)	449
MspI	CCGG	1 cut(s)	690
MspR9I	CCNGG	3 cut(s)	129, 565, 690
MunI	CAATTG	1 cut(s)	888
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	2 cut(s)	129, 565
MvnI	CGCG	2 cut(s)	704, 951
MwoI	GCNNNNNNNGC	5 cut(s)	365, 701, 764, 773, 935
NciI	CCSGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	4 cut(s)	208, 329, 417, 662
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	5 cut(s)	209, 302, 336, 486, 854
NlaIV	GGNNCC	1 cut(s)	609
NmuCI	GTSAC	5 cut(s)	502, 541, 594, 790, 919
NspI	RCATGY	1 cut(s)	854
OliI	CACNNNNGTG	1 cut(s)	715
PaeI	GCATGC	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	1 cut(s)	671
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	2 cut(s)	20, 455
PkrI	GCNGC	3 cut(s)	250, 673, 757
PleI	GAGTC	1 cut(s)	967
PpsI	GAGTC	1 cut(s)	967
PsiI	TTATAA	1 cut(s)	626
Psp6I	CCWGG	2 cut(s)	127, 563
PspEI	GGTNACC	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	945
PspGI	CCWGG	2 cut(s)	127, 563
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	1 cut(s)	607
PsrI	GAACNNNNNNTAC	2 cut(s)	885, 917
PstNI	CAGNNNCTG	3 cut(s)	794, 923, 1031
RsaI	GTAC	2 cut(s)	35, 581
RsaNI	GTAC	2 cut(s)	34, 580
RseI	CAYNNNNRTG	3 cut(s)	303, 715, 830
SaqAI	TTAA	3 cut(s)	531, 804, 884
SatI	GCNGC	3 cut(s)	249, 672, 756
Sau3AI	GATC	4 cut(s)	208, 329, 417, 662
Sau96I	GGNCC	1 cut(s)	607
SchI	GAGTC	1 cut(s)	967
ScrFI	CCNGG	3 cut(s)	129, 565, 690
SduI	GDGCHC	3 cut(s)	181, 697, 940
SmiMI	CAYNNNNRTG	3 cut(s)	303, 715, 830
SphI	GCATGC	1 cut(s)	854
Sse9I	AATT	3 cut(s)	116, 676, 888
SsiI	CCGC	5 cut(s)	141, 359, 429, 474, 704
SspMI	CTAG	2 cut(s)	356, 759
StyD4I	CCNGG	3 cut(s)	127, 563, 688
TaaI	ACNGT	4 cut(s)	615, 714, 790, 820
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	665
TasI	AATT	3 cut(s)	116, 676, 888
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	20, 455
Tru1I	TTAA	3 cut(s)	531, 804, 884
Tru9I	TTAA	3 cut(s)	531, 804, 884
TscAI	CASTG	7 cut(s)	150, 457, 717, 795, 924, 940, 966
TseFI	GTSAC	5 cut(s)	502, 541, 594, 790, 919
TseI	GCWGC	3 cut(s)	248, 671, 755
Tsp45I	GTSAC	5 cut(s)	502, 541, 594, 790, 919
TspDTI	ATGAA	1 cut(s)	471
TspRI	CASTG	7 cut(s)	150, 457, 717, 795, 924, 940, 966
VneI	GTGCAC	1 cut(s)	693
XapI	RAATTY	2 cut(s)	116, 676
XceI	RCATGY	1 cut(s)	854
XspI	CTAG	2 cut(s)	356, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.