RLG00000016039

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015464
Physical Location & Seq
Forward (+)
3364667 .. 3365716
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016039

Sequence Viewer

Length: 1050 bp
ATGTCTGCGATTAGGGTTGATGCTAAGCAGTACTACGCCACTAGTAGTCTTCTGATTGGCTATGCAGTCTGTTCTAGCTTGTTAGCTGTGATAAACAAGTTTGCCATAACCAAATTCAACTACCCTGGTCTTTTGACCGCTCTGCAATACCTCACTTCTGCTTTGGGGGTTTGGGTTTTGGGAAAGTTGGGGTTTTTGCACCATGATGCGTTCACATGGGAAACAGCTAAGAAGTTCTTGCCTGCTGCTCTTGTGTTCTATCTTGCGATTTTCACCAATACTAATCTGCTTCGCCATGCCAATGTGGATACTTTTATAGTGTTTCGATCGTGTACACCCATTTTGGTTGCGCTGGCTGATACAGTGTTTAGGAATCAGAAGTGCCCGTCAAAGCTTACGTTTCTGTCTTTGTTGGTGATTTTGGGGGGAGCTGTTGGGTACGTGGCCACTGATTATGGGTTTACTTTGACTGCTTATTCGTGGGCATTTGCGTATTTGGTGACCATTACGACTGAGATGGTGTACATTAAGCATATGGTGACGAATCTCGGGTTGAACACTTGGGGTTTTGTGTTGTACAACAATTTGTTGTCATTGATGATGGCTCCGCCGTTCTGGATCATTACAGGAGAGTATGTTGAGGTGTTTGCAGCTTTGGGATCCAAGACTGAGAGTTTCTTTGCACCTGGTGCATTCTTTGCGGTGTCATTGTCGTGTGTGTTTGGCCTGCTCATCAGCTTCTTTGGGTTTGCAGCGAGGAAGGCAGTCTCTGCAACAGCCTTTACAGTGACTGGTGTTGTTAACAAGTTTCTTACGGTTGCTATCAATGTGATGATATGGGATAAGCATGCCAGCCCCTTTGGTTTGTTCTGCCTCCTGATGACAATCATTGGTGGTGTCTTTTATCAGCAATCCGTAACTGGACCTAGCAGTGCCCCATCAAAGAGTGAATCAGCAGTGCCTAAGCAGACTGACAGCGAGAATGATGGTGATGACTTTGACAATGAAAACCAAGGGAAGGCTGTTTCTGCTAAACTTGGGTCTATATGA

Protein Analysis

350

Amino Acids

37.99

Weight (kDa)

8.47

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 22 - 302 4.9e-15 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19980
fragaria_vesca FvH4_2g20640 FvH4_6g29120
malus_domestica MD15G1180200.v1.1
prunus_persica Prupe.7G236300_v2.0.a1
pyrus_communis pycom02g03270 pycom15g16160
rosa_chinensis RchiOBHm_Chr2g0089551
rosa_laevigata RLG00000016039
rosa_multiflora Rmu_sc0006193.1_g000006
rosa_roxburghii Rroxscaffold_2G00151830
rosa_rugosa Rorug02G0001500
rosa_samantha Rh2AG046900 Rh2BG045700 Rh2CG047400 Rh2DG046900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 140
AciI CCGC 3 cut(s) 138, 608, 701
AclWI GGATC 3 cut(s) 626, 654, 667
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 1 cut(s) 113
AdeI CACNNNGTG 1 cut(s) 689
AfaI GTAC 5 cut(s) 32, 334, 440, 524, 578
AfiI CCNNNNNNNGG 1 cut(s) 1018
AgsI TTSAA 2 cut(s) 118, 556
AhlI ACTAGT 1 cut(s) 41
AjnI CCWGG 2 cut(s) 124, 685
AluBI AGCT 7 cut(s) 78, 86, 227, 394, 431, 653, 738
AluI AGCT 7 cut(s) 78, 86, 227, 394, 431, 653, 738
Alw26I GTCTC 1 cut(s) 772
AlwI GGATC 3 cut(s) 626, 654, 667
AlwNI CAGNNNCTG 2 cut(s) 770, 791
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 2 cut(s) 444, 724
ApeKI GCWGC 3 cut(s) 245, 650, 752
ApoI RAATTY 1 cut(s) 113
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 923
AsuHPI GGTGA 5 cut(s) 265, 427, 511, 550, 1001
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 1 cut(s) 923
BaeGI GKGCMC 2 cut(s) 386, 937
BalI TGGCCA 1 cut(s) 446
BamHI GGATCC 1 cut(s) 659
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 232, 662, 764
BccI CCATC 4 cut(s) 511, 595, 946, 980
BceAI ACGGC 1 cut(s) 595
BciT130I CCWGG 2 cut(s) 126, 687
BciVI GTATCC 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 772
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 3 cut(s) 42, 75, 927
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 3 cut(s) 246, 651, 753
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 3 cut(s) 247, 652, 754
BmcAI AGTACT 1 cut(s) 32
Bme1390I CCNGG 2 cut(s) 126, 687
Bme18I GGWCC 1 cut(s) 923
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 923
BmiI GGNNCC 2 cut(s) 606, 661
BmrFI CCNGG 2 cut(s) 126, 687
BmsI GCATC 2 cut(s) 10, 196
BpiI GAAGAC 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 963
Bpu1102I GCTNAGC 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 884
BsaJI CCNNGG 2 cut(s) 124, 1012
BsaXI ACNNNNNCTCC 2 cut(s) 621, 651
Bsc4I CCNNNNNNNGG 1 cut(s) 1018
Bse1I ACTGG 2 cut(s) 796, 925
Bse8I GATNNNNATC 1 cut(s) 884
BseBI CCWGG 2 cut(s) 126, 687
BseDI CCNNGG 2 cut(s) 124, 1012
BseJI GATNNNNATC 1 cut(s) 884
BseLI CCNNNNNNNGG 1 cut(s) 1018
BseMII CTCAG 2 cut(s) 504, 660
BseNI ACTGG 2 cut(s) 796, 925
BseSI GKGCMC 2 cut(s) 386, 937
BseXI GCAGC 3 cut(s) 232, 662, 764
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 2 cut(s) 446, 726
BsiEI CGRYCG 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 1018
BsmAI GTCTC 1 cut(s) 772
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 2 cut(s) 446, 726
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 386, 937
Bsp1407I TGTACA 3 cut(s) 332, 522, 576
Bsp143I GATC 3 cut(s) 326, 618, 659
Bsp1720I GCTNAGC 1 cut(s) 24
BspACI CCGC 3 cut(s) 138, 608, 701
BspANI GGCC 2 cut(s) 446, 726
BspCNI CTCAG 2 cut(s) 505, 661
BspLI GGNNCC 2 cut(s) 606, 661
BspPI GGATC 3 cut(s) 626, 654, 667
BsrBI CCGCTC 1 cut(s) 140
BsrGI TGTACA 3 cut(s) 332, 522, 576
BsrI ACTGG 2 cut(s) 796, 925
BssECI CCNNGG 2 cut(s) 124, 1012
BssMI GATC 3 cut(s) 326, 618, 659
BssT1I CCWWGG 1 cut(s) 1012
Bst2UI CCWGG 2 cut(s) 126, 687
Bst4CI ACNGT 3 cut(s) 364, 787, 817
BstAPI GCANNNNNTGC 3 cut(s) 689, 698, 770
BstAUI TGTACA 3 cut(s) 332, 522, 576
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 5 cut(s) 243, 354, 728, 849, 853
BstDEI CTNAG 5 cut(s) 24, 228, 513, 669, 963
BstEII GGTNACC 1 cut(s) 499
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 3 cut(s) 329, 621, 662
BstMAI GTCTC 1 cut(s) 772
BstMBI GATC 3 cut(s) 326, 618, 659
BstMCI CGRYCG 1 cut(s) 329
BstMWI GCNNNNNNNGC 5 cut(s) 689, 698, 761, 770, 1028
BstNI CCWGG 2 cut(s) 126, 687
BstNSI RCATGY 1 cut(s) 851
BstPI GGTNACC 1 cut(s) 499
BstSCI CCNGG 2 cut(s) 124, 685
BstSLI GKGCMC 2 cut(s) 386, 937
BstV1I GCAGC 3 cut(s) 232, 662, 764
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 659
BstYI RGATCY 1 cut(s) 659
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 2 cut(s) 446, 726
BtsI GCAGTG 2 cut(s) 937, 963
BtsIMutI CAGTG 5 cut(s) 369, 447, 792, 937, 963
Cac8I GCNNGC 5 cut(s) 243, 354, 728, 849, 853
CaiI CAGNNNCTG 2 cut(s) 770, 791
CfoI GCGC 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 923
CsiI ACCWGGT 1 cut(s) 685
Csp6I GTAC 5 cut(s) 31, 333, 439, 523, 577
CviAII CATG 4 cut(s) 203, 216, 296, 848
CviQI GTAC 5 cut(s) 31, 333, 439, 523, 577
DdeI CTNAG 5 cut(s) 24, 228, 513, 669, 963
DpnI GATC 3 cut(s) 328, 620, 661
DpnII GATC 3 cut(s) 326, 618, 659
DraIII CACNNNGTG 1 cut(s) 689
EaeI YGGCCR 1 cut(s) 444
EciI GGCGGA 1 cut(s) 597
Eco130I CCWWGG 1 cut(s) 1012
Eco47I GGWCC 1 cut(s) 923
Eco88I CYCGRG 1 cut(s) 548
Eco91I GGTNACC 1 cut(s) 499
EcoO65I GGTNACC 1 cut(s) 499
EcoRII CCWGG 2 cut(s) 124, 685
EcoT14I CCWWGG 1 cut(s) 1012
ErhI CCWWGG 1 cut(s) 1012
FaeI CATG 4 cut(s) 206, 219, 299, 851
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 4 cut(s) 202, 215, 295, 847
FauNDI CATATG 1 cut(s) 534
Fnu4HI GCNGC 3 cut(s) 246, 651, 753
Fsp4HI GCNGC 3 cut(s) 246, 651, 753
FspBI CTAG 3 cut(s) 42, 75, 927
GlaI GCGC 1 cut(s) 351
GluI GCNGC 3 cut(s) 246, 651, 753
HaeIII GGCC 2 cut(s) 446, 726
HhaI GCGC 1 cut(s) 352
Hin1II CATG 4 cut(s) 206, 219, 299, 851
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 3 cut(s) 373, 544, 950
HpaI GTTAAC 1 cut(s) 802
HphI GGTGA 5 cut(s) 265, 427, 511, 550, 1001
Hpy166II GTNNAC 6 cut(s) 213, 333, 335, 462, 523, 802
Hpy188I TCNGA 2 cut(s) 54, 378
Hpy188III TCNNGA 2 cut(s) 616, 877
Hpy8I GTNNAC 6 cut(s) 213, 333, 335, 462, 523, 802
HpyAV CCTTC 2 cut(s) 754, 1012
HpyCH4III ACNGT 3 cut(s) 364, 787, 817
HpyCH4IV ACGT 2 cut(s) 398, 441
HpyCH4V TGCA 8 cut(s) 65, 145, 199, 650, 683, 692, 752, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 689, 698, 761, 770, 1028
HpyF3I CTNAG 5 cut(s) 24, 228, 513, 669, 963
HpySE526I ACGT 2 cut(s) 398, 441
Hsp92II CATG 4 cut(s) 206, 219, 299, 851
HspAI GCGC 1 cut(s) 350
KspAI GTTAAC 1 cut(s) 802
Kzo9I GATC 3 cut(s) 326, 618, 659
LmnI GCTCC 2 cut(s) 428, 610
Lsp1109I GCAGC 3 cut(s) 232, 662, 764
LweI GCATC 2 cut(s) 10, 196
MabI ACCWGGT 1 cut(s) 685
MaeI CTAG 3 cut(s) 42, 75, 927
MaeII ACGT 2 cut(s) 398, 441
MaeIII GTNAC 4 cut(s) 499, 538, 787, 916
MalI GATC 3 cut(s) 328, 620, 661
MbiI CCGCTC 1 cut(s) 140
MboI GATC 3 cut(s) 326, 618, 659
MboII GAAGA 1 cut(s) 41
MflI RGATCY 1 cut(s) 659
MhlI GDGCHC 2 cut(s) 386, 937
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 2 cut(s) 113, 583
MluNI TGGCCA 1 cut(s) 446
MnlI CCTC 4 cut(s) 161, 634, 750, 884
Mox20I TGGCCA 1 cut(s) 446
MscI TGGCCA 1 cut(s) 446
MseI TTAA 2 cut(s) 528, 801
MslI CAYNNNNRTG 3 cut(s) 204, 300, 712
Msp20I TGGCCA 1 cut(s) 446
MspR9I CCNGG 2 cut(s) 126, 687
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 2 cut(s) 126, 687
MwoI GCNNNNNNNGC 5 cut(s) 689, 698, 761, 770, 1028
NdeI CATATG 1 cut(s) 534
NdeII GATC 3 cut(s) 326, 618, 659
NlaIII CATG 4 cut(s) 206, 219, 299, 851
NlaIV GGNNCC 2 cut(s) 606, 661
NmuCI GTSAC 3 cut(s) 499, 538, 787
NspI RCATGY 1 cut(s) 851
PaeI GCATGC 1 cut(s) 851
PctI GAATGC 1 cut(s) 692
PfeI GAWTC 3 cut(s) 373, 544, 950
PkrI GCNGC 3 cut(s) 247, 652, 754
Ple19I CGATCG 1 cut(s) 329
Ppu21I YACGTR 1 cut(s) 442
Psp6I CCWGG 2 cut(s) 124, 685
PspEI GGTNACC 1 cut(s) 499
PspGI CCWGG 2 cut(s) 124, 685
PspN4I GGNNCC 2 cut(s) 606, 661
PspPI GGNCC 1 cut(s) 923
PstNI CAGNNNCTG 2 cut(s) 770, 791
PsuI RGATCY 1 cut(s) 659
PvuI CGATCG 1 cut(s) 329
RsaI GTAC 5 cut(s) 32, 334, 440, 524, 578
RsaNI GTAC 5 cut(s) 31, 333, 439, 523, 577
RseI CAYNNNNRTG 3 cut(s) 204, 300, 712
SaqAI TTAA 2 cut(s) 528, 801
SatI GCNGC 3 cut(s) 246, 651, 753
Sau3AI GATC 3 cut(s) 326, 618, 659
Sau96I GGNCC 1 cut(s) 923
ScaI AGTACT 1 cut(s) 32
ScrFI CCNGG 2 cut(s) 126, 687
SduI GDGCHC 2 cut(s) 386, 937
SexAI ACCWGGT 1 cut(s) 685
SfaNI GCATC 2 cut(s) 10, 196
SinI GGWCC 1 cut(s) 923
SmiMI CAYNNNNRTG 3 cut(s) 204, 300, 712
SpeI ACTAGT 1 cut(s) 41
SphI GCATGC 1 cut(s) 851
Sse9I AATT 2 cut(s) 113, 583
SsiI CCGC 3 cut(s) 138, 608, 701
SspMI CTAG 3 cut(s) 42, 75, 927
StyD4I CCNGG 2 cut(s) 124, 685
StyI CCWWGG 1 cut(s) 1012
TaaI ACNGT 3 cut(s) 364, 787, 817
TaiI ACGT 2 cut(s) 401, 444
TaqI TCGA 1 cut(s) 325
TasI AATT 2 cut(s) 113, 583
TatI WGTACW 4 cut(s) 30, 332, 522, 576
TfiI GAWTC 3 cut(s) 373, 544, 950
Tru1I TTAA 2 cut(s) 528, 801
Tru9I TTAA 2 cut(s) 528, 801
TscAI CASTG 5 cut(s) 369, 454, 792, 937, 963
TseFI GTSAC 3 cut(s) 499, 538, 787
TseI GCWGC 3 cut(s) 245, 650, 752
Tsp45I GTSAC 3 cut(s) 499, 538, 787
TspDTI ATGAA 1 cut(s) 1020
TspGWI ACGGA 1 cut(s) 904
TspRI CASTG 5 cut(s) 369, 454, 792, 937, 963
VpaK11BI GGWCC 1 cut(s) 923
XapI RAATTY 1 cut(s) 113
XceI RCATGY 1 cut(s) 851
XspI CTAG 3 cut(s) 42, 75, 927
ZrmI AGTACT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.