Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015464

Physical Location & Seq

Genomic Coordinates Reverse (-)

88978983 .. 88980031

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCTGCGATTAGGGTTGATGCTAAGCAGTACTACGCCACTAGTAGTCTTCTGATTGGCTATGCAGTCTGTTCTAGCTTGTTAGCTGTGATAAACAAGTTTGCCATAACCAAATTCAACTACCCGGGTCTTTTGACCGCTCTGCAATACCTCACTTCTGCTTTGGGGGTTTGGGTTTTGGGAAAGTTGGGGTTTTTGCACCATGATGCATTCACATGGGAAACAGCTAAGAAGTTCTTGCCTGCGGCTCTTGAATCAGAAGTGCCCGTCGAAGCTTACGTTTCTGTCTTTGTTGGTGATTTTGGGGGAGCTGTTGGGTATGTGGCCACTGATTATGGCTTTACTTTGACTGCTTATTCGTGGGCGTTTGCGTATATGGTGACCATTACGACTGAGATGGTGTACATTAAGCATATGGTGACGAATCTCGGGTTGAACACTTGGGGTTTTGTGTTGTACAACAATTTGTTGTCATTGATGATGGCTCCGCCGTTCTGGATCATTACAGGAGAGTATGTTGAGGTGTTTGCTGCTTTGGGATCCAAGACTGAGAGTTTCTTTGCACCTGGTGCATTCTTTGCGGTGTCATTGTCGTGTGTGTTTGGCCTGCTTATCAGCTTCTTTGGGTTTGCAGCGAGGAAGGCAGTCTCTGCAACAGCCTTTACAGTGACTGGTGTTGTTAACAAGTTTCTCACGGTTGCTATCAATGTGATGATATGGGATAAGCATGCCAGCCCCTTTGGTTTGTTCTGCCTCCTAATGACAATCATTGGTGGTGTCTTTTATCAGCAATCCGTAACTGGACCTAGCAGTACCCCATCAAAGAGTGAATCAGCAGTGCCTAAGCAGACTGACAGCGAGAATGATGGTGATGACTTTGACAATGAAAACCAAGGGAAGGCTGTTTCTGCTAAACTTGGGTCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015783 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

309

Amino Acids

33.44

Weight (kDa)

5.55

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19980
fragaria_vesca	FvH4_2g20640 FvH4_6g29120
malus_domestica	MD15G1180200.v1.1
prunus_persica	Prupe.7G236300_v2.0.a1
pyrus_communis	pycom02g03270 pycom15g16160
rosa_chinensis	RchiOBHm_Chr2g0089551
rosa_laevigata	RLG00000016039
rosa_multiflora	Rmu_sc0006193.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151830
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2AG046900 Rh2BG045700 Rh2CG047400 Rh2DG046900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	4 cut(s)	138, 245, 488, 581
AclWI	GGATC	3 cut(s)	506, 534, 547
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	113
AdeI	CACNNNGTG	1 cut(s)	569
AfaI	GTAC	4 cut(s)	32, 404, 458, 814
AfiI	CCNNNNNNNGG	1 cut(s)	898
AgsI	TTSAA	3 cut(s)	118, 254, 436
AhlI	ACTAGT	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	6 cut(s)	78, 86, 227, 275, 311, 618
AluI	AGCT	6 cut(s)	78, 86, 227, 275, 311, 618
Alw26I	GTCTC	1 cut(s)	652
AlwI	GGATC	3 cut(s)	506, 534, 547
AlwNI	CAGNNNCTG	2 cut(s)	650, 671
Ama87I	CYCGRG	2 cut(s)	124, 428
AoxI	GGCC	2 cut(s)	324, 604
ApeKI	GCWGC	2 cut(s)	530, 632
ApoI	RAATTY	1 cut(s)	113
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AspS9I	GGNCC	1 cut(s)	803
AsuC2I	CCSGG	2 cut(s)	125, 126
AsuHPI	GGTGA	4 cut(s)	308, 391, 430, 881
AvaI	CYCGRG	2 cut(s)	124, 428
AvaII	GGWCC	1 cut(s)	803
BaeGI	GKGCMC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	326
BamHI	GGATCC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	517, 644
BccI	CCATC	4 cut(s)	391, 475, 826, 860
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	2 cut(s)	125, 126
BcoDI	GTCTC	1 cut(s)	652
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	3 cut(s)	42, 75, 807
BisI	GCNGC	3 cut(s)	246, 531, 633
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	3 cut(s)	247, 532, 634
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	3 cut(s)	125, 126, 567
Bme18I	GGWCC	1 cut(s)	803
BmeT110I	CYCGRG	2 cut(s)	124, 428
BmgT120I	GGNCC	1 cut(s)	803
BmiI	GGNNCC	2 cut(s)	486, 541
BmrFI	CCNGG	3 cut(s)	125, 126, 567
BmsI	GCATC	2 cut(s)	10, 196
BpiI	GAAGAC	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	843
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuMI	CCSGG	2 cut(s)	125, 126
BsaJI	CCNNGG	2 cut(s)	124, 892
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	898
Bse1I	ACTGG	2 cut(s)	676, 805
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	124, 892
BseLI	CCNNNNNNNGG	1 cut(s)	898
BseMII	CTCAG	2 cut(s)	384, 540
BseNI	ACTGG	2 cut(s)	676, 805
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	517, 644
BshFI	GGCC	2 cut(s)	326, 606
BsiHKCI	CYCGRG	2 cut(s)	124, 428
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	898
BsmAI	GTCTC	1 cut(s)	652
BsmI	GAATGC	2 cut(s)	209, 572
BsnI	GGCC	2 cut(s)	326, 606
BsoBI	CYCGRG	2 cut(s)	124, 428
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	2 cut(s)	402, 456
Bsp143I	GATC	2 cut(s)	498, 539
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	4 cut(s)	138, 245, 488, 581
BspANI	GGCC	2 cut(s)	326, 606
BspCNI	CTCAG	2 cut(s)	385, 541
BspLI	GGNNCC	2 cut(s)	486, 541
BspPI	GGATC	3 cut(s)	506, 534, 547
BsrBI	CCGCTC	1 cut(s)	140
BsrGI	TGTACA	2 cut(s)	402, 456
BsrI	ACTGG	2 cut(s)	676, 805
BssECI	CCNNGG	2 cut(s)	124, 892
BssMI	GATC	2 cut(s)	498, 539
BssT1I	CCWWGG	1 cut(s)	892
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	2 cut(s)	667, 697
BstAPI	GCANNNNNTGC	3 cut(s)	569, 578, 650
BstAUI	TGTACA	2 cut(s)	402, 456
BstC8I	GCNNGC	4 cut(s)	243, 608, 729, 733
BstDEI	CTNAG	5 cut(s)	24, 228, 393, 549, 843
BstEII	GGTNACC	1 cut(s)	379
BstKTI	GATC	2 cut(s)	501, 542
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	2 cut(s)	498, 539
BstMWI	GCNNNNNNNGC	5 cut(s)	569, 578, 641, 650, 908
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	1 cut(s)	731
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	3 cut(s)	123, 124, 565
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	517, 644
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	326, 606
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	3 cut(s)	327, 672, 843
Cac8I	GCNNGC	4 cut(s)	243, 608, 729, 733
CaiI	CAGNNNCTG	2 cut(s)	650, 671
Cfr13I	GGNCC	1 cut(s)	803
Cfr9I	CCCGGG	1 cut(s)	124
CsiI	ACCWGGT	1 cut(s)	565
Csp6I	GTAC	4 cut(s)	31, 403, 457, 813
CviAII	CATG	3 cut(s)	203, 216, 728
CviQI	GTAC	4 cut(s)	31, 403, 457, 813
DdeI	CTNAG	5 cut(s)	24, 228, 393, 549, 843
DpnI	GATC	2 cut(s)	500, 541
DpnII	GATC	2 cut(s)	498, 539
DraIII	CACNNNGTG	1 cut(s)	569
EaeI	YGGCCR	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	892
Eco47I	GGWCC	1 cut(s)	803
Eco88I	CYCGRG	2 cut(s)	124, 428
Eco91I	GGTNACC	1 cut(s)	379
EcoO65I	GGTNACC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	892
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	892
FaeI	CATG	3 cut(s)	206, 219, 731
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	3 cut(s)	202, 215, 727
FauNDI	CATATG	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	246, 531, 633
Fsp4HI	GCNGC	3 cut(s)	246, 531, 633
FspBI	CTAG	3 cut(s)	42, 75, 807
GluI	GCNGC	3 cut(s)	246, 531, 633
HaeIII	GGCC	2 cut(s)	326, 606
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	3 cut(s)	206, 219, 731
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	3 cut(s)	254, 424, 830
HpaI	GTTAAC	1 cut(s)	682
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	4 cut(s)	308, 391, 430, 881
Hpy166II	GTNNAC	2 cut(s)	403, 682
Hpy188I	TCNGA	2 cut(s)	54, 259
Hpy188III	TCNNGA	2 cut(s)	251, 496
Hpy8I	GTNNAC	2 cut(s)	403, 682
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	634, 892
HpyCH4III	ACNGT	2 cut(s)	667, 697
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	8 cut(s)	65, 145, 199, 209, 563, 572, 632, 653
HpyF10VI	GCNNNNNNNGC	5 cut(s)	569, 578, 641, 650, 908
HpyF3I	CTNAG	5 cut(s)	24, 228, 393, 549, 843
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	206, 219, 731
KspAI	GTTAAC	1 cut(s)	682
Kzo9I	GATC	2 cut(s)	498, 539
LmnI	GCTCC	2 cut(s)	308, 490
Lsp1109I	GCAGC	2 cut(s)	517, 644
LweI	GCATC	2 cut(s)	10, 196
MabI	ACCWGGT	1 cut(s)	565
MaeI	CTAG	3 cut(s)	42, 75, 807
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	4 cut(s)	379, 418, 667, 796
MalI	GATC	2 cut(s)	500, 541
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	2 cut(s)	498, 539
MboII	GAAGA	1 cut(s)	41
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	2 cut(s)	113, 463
MluNI	TGGCCA	1 cut(s)	326
MnlI	CCTC	4 cut(s)	161, 514, 630, 764
Mox20I	TGGCCA	1 cut(s)	326
Mph1103I	ATGCAT	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	2 cut(s)	408, 681
MslI	CAYNNNNRTG	3 cut(s)	204, 214, 592
Msp20I	TGGCCA	1 cut(s)	326
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	3 cut(s)	125, 126, 567
Mva1269I	GAATGC	2 cut(s)	209, 572
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	5 cut(s)	569, 578, 641, 650, 908
NciI	CCSGG	2 cut(s)	125, 126
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	2 cut(s)	498, 539
NlaIII	CATG	3 cut(s)	206, 219, 731
NlaIV	GGNNCC	2 cut(s)	486, 541
NmuCI	GTSAC	3 cut(s)	379, 418, 667
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	1 cut(s)	731
PaeI	GCATGC	1 cut(s)	731
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	2 cut(s)	209, 572
PfeI	GAWTC	3 cut(s)	254, 424, 830
PkrI	GCNGC	3 cut(s)	247, 532, 634
Psp6I	CCWGG	1 cut(s)	565
PspEI	GGTNACC	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	486, 541
PspPI	GGNCC	1 cut(s)	803
PstNI	CAGNNNCTG	2 cut(s)	650, 671
PsuI	RGATCY	1 cut(s)	539
RsaI	GTAC	4 cut(s)	32, 404, 458, 814
RsaNI	GTAC	4 cut(s)	31, 403, 457, 813
RseI	CAYNNNNRTG	3 cut(s)	204, 214, 592
SaqAI	TTAA	2 cut(s)	408, 681
SatI	GCNGC	3 cut(s)	246, 531, 633
Sau3AI	GATC	2 cut(s)	498, 539
Sau96I	GGNCC	1 cut(s)	803
ScaI	AGTACT	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	125, 126, 567
SduI	GDGCHC	1 cut(s)	267
SexAI	ACCWGGT	1 cut(s)	565
SfaNI	GCATC	2 cut(s)	10, 196
SinI	GGWCC	1 cut(s)	803
SmaI	CCCGGG	1 cut(s)	126
SmiMI	CAYNNNNRTG	3 cut(s)	204, 214, 592
SpeI	ACTAGT	1 cut(s)	41
SphI	GCATGC	1 cut(s)	731
Sse9I	AATT	2 cut(s)	113, 463
SsiI	CCGC	4 cut(s)	138, 245, 488, 581
SspMI	CTAG	3 cut(s)	42, 75, 807
StyD4I	CCNGG	3 cut(s)	123, 124, 565
StyI	CCWWGG	1 cut(s)	892
TaaI	ACNGT	2 cut(s)	667, 697
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	113, 463
TatI	WGTACW	3 cut(s)	30, 402, 456
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	3 cut(s)	254, 424, 830
Tru1I	TTAA	2 cut(s)	408, 681
Tru9I	TTAA	2 cut(s)	408, 681
TscAI	CASTG	3 cut(s)	334, 672, 843
TseFI	GTSAC	3 cut(s)	379, 418, 667
TseI	GCWGC	2 cut(s)	530, 632
Tsp45I	GTSAC	3 cut(s)	379, 418, 667
TspDTI	ATGAA	1 cut(s)	900
TspGWI	ACGGA	1 cut(s)	784
TspMI	CCCGGG	1 cut(s)	124
TspRI	CASTG	3 cut(s)	334, 672, 843
VpaK11BI	GGWCC	1 cut(s)	803
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	731
XmaI	CCCGGG	1 cut(s)	124
XspI	CTAG	3 cut(s)	42, 75, 807
ZrmI	AGTACT	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.