Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013157

Physical Location & Seq

Genomic Coordinates Reverse (-)

6942955 .. 6946514

Gene Structure 3560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGTGACGTACGTGAGCGCGTTGTTCTACGGATTCGGAGGGATAGTCGTCGCCGGAGTGGCGCTGCTCGTGGCTTTCCAGGAGAAGCTTGTGTACGTCCCAGTGCTTCCGGGTTTAAGCAAGTCTTATCCGATCACTCCCGCTAGGCTCAATCTCATCTACGAAGATATTTGGCTTCAATCATCCGATGGTGTACGTCTCCACGCTTGGTTCATCAAGATGTTCCCTGAATGTCGAGGTCCAACCATTTTATTTTTCCAGGAGAACGCTGGAAACATCGCTCATCGTCTGGAGATGGTTCGCATCATGATACAAAAATTGAAGTGCAATGTATTCATGCTTTCATATCGCGGCTATGGGGCAAGTGAAGGCTATCCTTCACAACAAGGTATCATAAAAGATGCTCAGGCTGCATTGGATCACCTTTCTGGAAGGACTGACATTGATACATCTAGAATAGTTGTATTTGGAAGGTCCCTTGGGGGAGCTGTTGGAGCTGTGCTTACCAAAAACAATCCAGATAAGGTATCTGCATTGATTCTGGAAAATACTTTCACATCCATTCTTGATATGGCTGGCGTTTTGCTGCCGTTCTTGAAGTGGTTTATTGGAGGAAGTGGTACGAAAAGCCTGAAGCTTCTTAATTTTGTTGTACGTTCTCCCTGGAAAACAATTGATGCTATTGCTGAGATCAAACAACCAGTGCTTTTCCTCTCTGGACTGCAAGATGAGATGGTCCCTCCATTTCACATGAAAATGCTGTATGCGAAAGCGGCTGCCCGTAACCCTCAGTGCACATTTGTGGAGTTTCCAAGTGGGATGCATATGGATACATGGCTGTCTGGTGGTGAAGTTTACTGGAAAACAAACTTGCAATTTCTCGAAAAGTATGCGCCTGAGAAAAGGAAAGAAGATACAGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0007275 GO:0008150 GO:0012505 GO:0016020 GO:0019866 GO:0022622 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4 Peptidase_S9

Protein Analysis

308

Amino Acids

34.34

Weight (kDa)

9.1

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	106 - 202	7.6e-09	alpha/beta hydrolase fold
Hydrolase_4	PF12146	109 - 206	2.8e-09	Serine aminopeptidase, S33
Peptidase_S9	PF00326	130 - 276	1.2e-12	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20520
fragaria_vesca	FvH4_1g08150 FvH4_1g08150
malus_domestica	MD02G1086100.v1.1 MD15G1213300.v1.1
prunus_persica	Prupe.7G203600_v2.0.a1 Prupe.7G203600_v2.0.a1
pyrus_communis	pycom02g06930 pycom15g18970
rosa_chinensis	RchiOBHm_Chr2g0094221
rosa_laevigata	RLG00000016467
rosa_multiflora	Rmu_sc0002193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147360
rosa_rugosa	Rorug02G0041900
rosa_samantha	Rh2AG089700 Rh2BG089800 Rh2CG092300 Rh2DG088600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	20, 351
AciI	CCGC	3 cut(s)	141, 351, 773
AclWI	GGATC	1 cut(s)	426
AcuI	CTGAAG	1 cut(s)	653
AfaI	GTAC	5 cut(s)	11, 95, 195, 622, 654
AgsI	TTSAA	3 cut(s)	179, 322, 598
AjnI	CCWGG	3 cut(s)	78, 258, 662
AleI	CACNNNNGTG	1 cut(s)	800
AluBI	AGCT	4 cut(s)	88, 488, 497, 637
AluI	AGCT	4 cut(s)	88, 488, 497, 637
Alw21I	GWGCWC	1 cut(s)	797
Alw26I	GTCTC	1 cut(s)	203
Alw44I	GTGCAC	1 cut(s)	793
AlwI	GGATC	1 cut(s)	426
ApaLI	GTGCAC	1 cut(s)	793
ApeKI	GCWGC	4 cut(s)	64, 410, 586, 776
AspLEI	GCGC	3 cut(s)	20, 64, 895
AspS9I	GGNCC	3 cut(s)	239, 474, 736
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	3 cut(s)	16, 413, 860
AvaII	GGWCC	3 cut(s)	239, 474, 736
BaeGI	GKGCMC	1 cut(s)	797
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BauI	CACGAG	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	797
BbvI	GCAGC	4 cut(s)	51, 397, 573, 763
BccI	CCATC	3 cut(s)	182, 289, 727
BceAI	ACGGC	1 cut(s)	574
BcgI	CGANNNNNNTGC	2 cut(s)	872, 906
BciT130I	CCWGG	3 cut(s)	80, 260, 664
BciVI	GTATCC	1 cut(s)	823
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	144, 453
BfoI	RGCGCY	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	823
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	6 cut(s)	65, 352, 411, 587, 774, 777
BlsI	GCNGC	6 cut(s)	66, 353, 412, 588, 775, 778
Bme1390I	CCNGG	4 cut(s)	80, 111, 260, 664
Bme18I	GGWCC	3 cut(s)	239, 474, 736
BmgT120I	GGNCC	3 cut(s)	239, 474, 736
BmiI	GGNNCC	2 cut(s)	476, 738
BmrFI	CCNGG	4 cut(s)	80, 111, 260, 664
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	4 cut(s)	312, 391, 667, 810
BmuI	ACTGGG	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	478, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bse1I	ACTGG	3 cut(s)	101, 701, 863
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	3 cut(s)	80, 260, 664
BseDI	CCNNGG	2 cut(s)	478, 662
BseGI	GGATG	3 cut(s)	182, 557, 825
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	4 cut(s)	419, 678, 803, 888
BseNI	ACTGG	3 cut(s)	101, 701, 863
BseSI	GKGCMC	1 cut(s)	797
BseXI	GCAGC	4 cut(s)	51, 397, 573, 763
Bsh1236I	CGCG	2 cut(s)	20, 351
BsiHKAI	GWGCWC	1 cut(s)	797
BsiSI	CCGG	2 cut(s)	54, 110
BsiWI	CGTACG	1 cut(s)	9
BslFI	GGGAC	3 cut(s)	83, 460, 722
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	3 cut(s)	83, 460, 722
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp143I	GATC	3 cut(s)	132, 418, 690
BspACI	CCGC	3 cut(s)	141, 351, 773
BspCNI	CTCAG	4 cut(s)	418, 679, 802, 889
BspFNI	CGCG	2 cut(s)	20, 351
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	476, 738
BspPI	GGATC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	3 cut(s)	101, 701, 863
BssECI	CCNNGG	2 cut(s)	478, 662
BssMI	GATC	3 cut(s)	132, 418, 690
BssSI	CACGAG	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	478
Bst2BI	CACGAG	1 cut(s)	68
Bst2UI	CCWGG	3 cut(s)	80, 260, 664
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	4 cut(s)	405, 687, 789, 897
BstF5I	GGATG	3 cut(s)	182, 557, 825
BstFNI	CGCG	2 cut(s)	20, 351
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	3 cut(s)	20, 64, 895
BstKTI	GATC	3 cut(s)	135, 421, 693
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	3 cut(s)	132, 418, 690
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 410, 494, 773
BstNI	CCWGG	3 cut(s)	80, 260, 664
BstSCI	CCNGG	4 cut(s)	78, 109, 258, 662
BstSLI	GKGCMC	1 cut(s)	797
BstUI	CGCG	2 cut(s)	20, 351
BstV1I	GCAGC	4 cut(s)	51, 397, 573, 763
BsuI	GTATCC	1 cut(s)	823
BtgZI	GCGATG	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	182, 557, 825
BtsIMutI	CAGTG	3 cut(s)	108, 708, 797
Cac8I	GCNNGC	1 cut(s)	577
CciI	TCATGA	1 cut(s)	306
CfoI	GCGC	3 cut(s)	20, 64, 895
Cfr13I	GGNCC	3 cut(s)	239, 474, 736
Csp6I	GTAC	5 cut(s)	10, 94, 194, 621, 653
CviAII	CATG	4 cut(s)	307, 337, 751, 834
CviQI	GTAC	5 cut(s)	10, 94, 194, 621, 653
DdeI	CTNAG	4 cut(s)	405, 687, 789, 897
DpnI	GATC	3 cut(s)	134, 420, 692
DpnII	GATC	3 cut(s)	132, 418, 690
Eco130I	CCWWGG	1 cut(s)	478
Eco47I	GGWCC	3 cut(s)	239, 474, 736
Eco57I	CTGAAG	1 cut(s)	653
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	3 cut(s)	78, 258, 662
EcoT14I	CCWWGG	1 cut(s)	478
EcoT22I	ATGCAT	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	478
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	4 cut(s)	310, 340, 754, 837
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FaqI	GGGAC	3 cut(s)	83, 460, 722
FatI	CATG	4 cut(s)	306, 336, 750, 833
FauI	CCCGC	1 cut(s)	148
FauNDI	CATATG	1 cut(s)	825
Fnu4HI	GCNGC	6 cut(s)	65, 352, 411, 587, 774, 777
FokI	GGATG	3 cut(s)	169, 544, 832
Fsp4HI	GCNGC	6 cut(s)	65, 352, 411, 587, 774, 777
FspBI	CTAG	2 cut(s)	144, 453
GlaI	GCGC	3 cut(s)	19, 63, 894
GluI	GCNGC	6 cut(s)	65, 352, 411, 587, 774, 777
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	65
HapII	CCGG	2 cut(s)	54, 110
HhaI	GCGC	3 cut(s)	20, 64, 895
Hin1II	CATG	4 cut(s)	310, 340, 754, 837
Hin6I	GCGC	3 cut(s)	18, 62, 893
HinP1I	GCGC	3 cut(s)	18, 62, 893
HindIII	AAGCTT	2 cut(s)	86, 635
HinfI	GANTC	2 cut(s)	33, 538
HpaII	CCGG	2 cut(s)	54, 110
HphI	GGTGA	3 cut(s)	16, 413, 860
Hpy166II	GTNNAC	4 cut(s)	94, 194, 795, 856
Hpy188I	TCNGA	3 cut(s)	38, 132, 187
Hpy8I	GTNNAC	4 cut(s)	94, 194, 795, 856
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	5 cut(s)	362, 387, 426, 465, 915
HpyCH4IV	ACGT	5 cut(s)	8, 12, 96, 196, 655
HpyCH4V	TGCA	7 cut(s)	327, 413, 533, 724, 795, 823, 874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 410, 494, 773
HpyF3I	CTNAG	4 cut(s)	405, 687, 789, 897
HpySE526I	ACGT	5 cut(s)	8, 12, 96, 196, 655
Hsp92II	CATG	4 cut(s)	310, 340, 754, 837
HspAI	GCGC	3 cut(s)	18, 62, 893
Kzo9I	GATC	3 cut(s)	132, 418, 690
LmnI	GCTCC	2 cut(s)	485, 494
Lsp1109I	GCAGC	4 cut(s)	51, 397, 573, 763
LweI	GCATC	4 cut(s)	312, 391, 667, 810
MaeI	CTAG	2 cut(s)	144, 453
MaeII	ACGT	5 cut(s)	8, 12, 96, 196, 655
MaeIII	GTNAC	2 cut(s)	4, 782
MalI	GATC	3 cut(s)	134, 420, 692
MboI	GATC	3 cut(s)	132, 418, 690
MboII	GAAGA	2 cut(s)	176, 923
MfeI	CAATTG	1 cut(s)	672
MhlI	GDGCHC	1 cut(s)	797
MluCI	AATT	4 cut(s)	317, 643, 672, 875
MmeI	TCCRAC	2 cut(s)	266, 472
MnlI	CCTC	6 cut(s)	32, 230, 605, 722, 750, 798
Mph1103I	ATGCAT	1 cut(s)	825
MseI	TTAA	2 cut(s)	116, 642
MslI	CAYNNNNRTG	3 cut(s)	218, 755, 800
MspI	CCGG	2 cut(s)	54, 110
MspR9I	CCNGG	4 cut(s)	80, 111, 260, 664
MunI	CAATTG	1 cut(s)	672
MvaI	CCWGG	3 cut(s)	80, 260, 664
MvnI	CGCG	2 cut(s)	20, 351
MwoI	GCNNNNNNNGC	4 cut(s)	59, 410, 494, 773
NciI	CCSGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	825
NdeII	GATC	3 cut(s)	132, 418, 690
NlaIII	CATG	4 cut(s)	310, 340, 754, 837
NlaIV	GGNNCC	2 cut(s)	476, 738
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	825
OliI	CACNNNNGTG	1 cut(s)	800
PagI	TCATGA	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	33, 538
Pfl23II	CGTACG	1 cut(s)	9
PfoI	TCCNGGA	2 cut(s)	78, 258
PkrI	GCNGC	6 cut(s)	66, 353, 412, 588, 775, 778
Ppu21I	YACGTR	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	474
Psp6I	CCWGG	3 cut(s)	78, 258, 662
PspGI	CCWGG	3 cut(s)	78, 258, 662
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	476, 738
PspPI	GGNCC	3 cut(s)	239, 474, 736
PspPPI	RGGWCCY	1 cut(s)	474
RsaI	GTAC	5 cut(s)	11, 95, 195, 622, 654
RsaNI	GTAC	5 cut(s)	10, 94, 194, 621, 653
RseI	CAYNNNNRTG	3 cut(s)	218, 755, 800
SaqAI	TTAA	2 cut(s)	116, 642
SatI	GCNGC	6 cut(s)	65, 352, 411, 587, 774, 777
Sau3AI	GATC	3 cut(s)	132, 418, 690
Sau96I	GGNCC	3 cut(s)	239, 474, 736
ScrFI	CCNGG	4 cut(s)	80, 111, 260, 664
SduI	GDGCHC	1 cut(s)	797
SfaNI	GCATC	4 cut(s)	312, 391, 667, 810
SinI	GGWCC	3 cut(s)	239, 474, 736
SmiMI	CAYNNNNRTG	3 cut(s)	218, 755, 800
Sse9I	AATT	4 cut(s)	317, 643, 672, 875
SsiI	CCGC	3 cut(s)	141, 351, 773
SspMI	CTAG	2 cut(s)	144, 453
StyD4I	CCNGG	4 cut(s)	78, 109, 258, 662
StyI	CCWWGG	1 cut(s)	478
TaiI	ACGT	5 cut(s)	11, 15, 99, 199, 658
TaqI	TCGA	2 cut(s)	235, 882
TasI	AATT	4 cut(s)	317, 643, 672, 875
TauI	GCSGC	2 cut(s)	354, 776
TfiI	GAWTC	2 cut(s)	33, 538
Tru1I	TTAA	2 cut(s)	116, 642
Tru9I	TTAA	2 cut(s)	116, 642
TscAI	CASTG	3 cut(s)	108, 708, 797
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	4 cut(s)	64, 410, 586, 776
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	4 cut(s)	202, 325, 333, 767
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	3 cut(s)	108, 708, 797
VneI	GTGCAC	1 cut(s)	793
VpaK11BI	GGWCC	3 cut(s)	239, 474, 736
XbaI	TCTAGA	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	2 cut(s)	266, 568
XspI	CTAG	2 cut(s)	144, 453
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.