Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013157

Physical Location & Seq

Genomic Coordinates Reverse (-)

7561419 .. 7565300

Gene Structure 3882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG092300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTGTCGTACGTGAGTGCGCTGCTGTACGGCGTCGGAGGCCTTGTCGTCGCCGGCATGGCGCTGCTGGTGGCGCTGCAGGAGCGACTGGTCTACGTGCCGGTCTTACCGGGCCTCACCAAGTCCTACCCTATGACCCCGGCCCGTCTCCGACTCACTTACGAGGACGTTTGGCTCCGATCCCCGGACGGCGTTCGCCTCCACGCCTGGTTCATCAAGCTCTTCCCCGACTGCCGAGGTCCAACGCTTTTGTTTTTCCAAGAGAATGCTGGAAATATTGCGCATCGTCTTGAAATGGTCCGCATAATGTTGCAAAAGTTGCAGTGCAACGTGTTTATGCTCTCATATCGAGGTTATGGAGCAAGTGAGGGATTTCCTTCTCAACATGGAATTACTAAAGATGCTCAGGCTGCGTTGGATCATCTTTCTCAGAGGACTGACATTGACACATCTAGAATAGTTGTCTTTGGAAGGTCGCTTGGGGGTGCAGTTGGATCTGTGGTTGCTAAAAACAACCCCGATAAGGTTGCTGCACTGATTCTTGAAAACACCTTCACATCCATTTTGGACATGGCTGGAGTTTTGCTGCCCTTCCTGAAGTATTTTATCGGAGGCAGTGCTTTCAAAGGTCCTAAAATCCTTAATTTCCTCGTACGTTCTCCTTGGAGTACAATCGATGTCATTGGTGAGGTGAGTTTACATGGTGGTAGAATTTCGTGTTCACCCTGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0007275 GO:0008150 GO:0012505 GO:0016020 GO:0019866 GO:0022622 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4 Peptidase_S9

Protein Analysis

244

Amino Acids

26.69

Weight (kDa)

9.34

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	103 - 219	1.1e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	104 - 197	3e-09	alpha/beta hydrolase fold
Peptidase_S9	PF00326	132 - 191	6.6e-06	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20520
fragaria_vesca	FvH4_1g08150 FvH4_1g08150
malus_domestica	MD02G1086100.v1.1 MD15G1213300.v1.1
prunus_persica	Prupe.7G203600_v2.0.a1 Prupe.7G203600_v2.0.a1
pyrus_communis	pycom02g06930 pycom15g18970
rosa_chinensis	RchiOBHm_Chr2g0094221
rosa_laevigata	RLG00000016467
rosa_multiflora	Rmu_sc0002193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147360
rosa_rugosa	Rorug02G0041900
rosa_samantha	Rh2AG089700 Rh2BG089800 Rh2CG092300 Rh2DG088600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	3 cut(s)	174, 426, 502
AcsI	RAATTY	1 cut(s)	711
AcuI	CTGAAG	1 cut(s)	617
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	4 cut(s)	11, 29, 654, 670
AfiI	CCNNNNNNNGG	2 cut(s)	184, 523
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	3 cut(s)	293, 545, 625
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	3 cut(s)	174, 426, 502
AoxI	GGCC	3 cut(s)	40, 112, 141
ApeKI	GCWGC	6 cut(s)	22, 64, 76, 410, 530, 586
ApoI	RAATTY	1 cut(s)	711
AspLEI	GCGC	4 cut(s)	22, 64, 76, 283
AspS9I	GGNCC	5 cut(s)	112, 142, 239, 298, 629
AsuC2I	CCSGG	3 cut(s)	111, 140, 185
AsuHPI	GGTGA	4 cut(s)	109, 698, 703, 714
AvaII	GGWCC	3 cut(s)	239, 298, 629
BbvI	GCAGC	6 cut(s)	9, 51, 63, 397, 517, 573
BceAI	ACGGC	2 cut(s)	46, 205
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	1 cut(s)	208
BcnI	CCSGG	3 cut(s)	111, 140, 185
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	77
BfoI	RGCGCY	2 cut(s)	65, 77
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	6 cut(s)	23, 65, 77, 411, 531, 587
BlsI	GCNGC	6 cut(s)	24, 66, 78, 412, 532, 588
Bme1390I	CCNGG	4 cut(s)	111, 140, 185, 208
Bme18I	GGWCC	3 cut(s)	239, 298, 629
BmgT120I	GGNCC	5 cut(s)	112, 142, 239, 298, 629
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	4 cut(s)	111, 140, 185, 208
BmsI	GCATC	2 cut(s)	292, 391
BpmI	CTGGAG	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	405
BpuMI	CCSGG	3 cut(s)	111, 140, 185
Bsa29I	ATCGAT	1 cut(s)	675
BsaAI	YACGTR	2 cut(s)	13, 97
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	4 cut(s)	138, 183, 235, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 523
Bse118I	RCCGGY	2 cut(s)	53, 100
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	4 cut(s)	138, 183, 235, 662
BseGI	GGATG	1 cut(s)	557
BseLI	CCNNNNNNNGG	2 cut(s)	184, 523
BseMII	CTCAG	2 cut(s)	419, 443
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	6 cut(s)	9, 51, 63, 397, 517, 573
BsgI	GTGCAG	2 cut(s)	507, 516
BshFI	GGCC	3 cut(s)	42, 114, 143
BshVI	ATCGAT	1 cut(s)	675
BsiSI	CCGG	5 cut(s)	54, 101, 110, 140, 185
BsiWI	CGTACG	2 cut(s)	9, 652
BslI	CCNNNNNNNGG	2 cut(s)	184, 523
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	3 cut(s)	42, 114, 143
Bsp143I	GATC	3 cut(s)	179, 418, 494
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	3 cut(s)	42, 114, 143
BspCNI	CTCAG	2 cut(s)	418, 442
BspDI	ATCGAT	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	176
BspMAI	CTGCAG	1 cut(s)	81
BspPI	GGATC	3 cut(s)	174, 426, 502
BspQI	GCTCTTC	1 cut(s)	227
BsrFI	RCCGGY	2 cut(s)	53, 100
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	2 cut(s)	53, 100
BssECI	CCNNGG	4 cut(s)	138, 183, 235, 662
BssMI	GATC	3 cut(s)	179, 418, 494
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	662
Bst2UI	CCWGG	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstBAI	YACGTR	2 cut(s)	13, 97
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	405, 429
BstF5I	GGATG	1 cut(s)	557
BstH2I	RGCGCY	2 cut(s)	65, 77
BstHHI	GCGC	4 cut(s)	22, 64, 76, 283
BstKTI	GATC	3 cut(s)	182, 421, 497
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	179, 418, 494
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 59, 73, 82, 319, 410
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	4 cut(s)	109, 138, 183, 206
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	6 cut(s)	9, 51, 63, 397, 517, 573
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
Bsu15I	ATCGAT	1 cut(s)	675
BsuRI	GGCC	3 cut(s)	42, 114, 143
BsuTUI	ATCGAT	1 cut(s)	675
BtsCI	GGATG	1 cut(s)	557
BtsI	GCAGTG	2 cut(s)	329, 622
BtsIMutI	CAGTG	3 cut(s)	329, 533, 622
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	4 cut(s)	22, 64, 76, 283
Cfr10I	RCCGGY	2 cut(s)	53, 100
Cfr13I	GGNCC	5 cut(s)	112, 142, 239, 298, 629
ClaI	ATCGAT	1 cut(s)	675
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	4 cut(s)	10, 28, 653, 669
CviAII	CATG	4 cut(s)	58, 386, 571, 701
CviJI	RGCY	7 cut(s)	42, 114, 143, 175, 220, 410, 575
CviKI_1	RGCY	7 cut(s)	42, 114, 143, 175, 220, 410, 575
CviQI	GTAC	4 cut(s)	10, 28, 653, 669
DdeI	CTNAG	2 cut(s)	405, 429
DpnI	GATC	3 cut(s)	181, 420, 496
DpnII	GATC	3 cut(s)	179, 418, 494
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	662
Eco147I	AGGCCT	1 cut(s)	42
Eco47I	GGWCC	3 cut(s)	239, 298, 629
Eco57I	CTGAAG	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	662
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	4 cut(s)	61, 389, 574, 704
FaiI	YATR	9 cut(s)	59, 134, 305, 338, 346, 357, 387, 572, 702
FatI	CATG	4 cut(s)	57, 385, 570, 700
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	6 cut(s)	23, 65, 77, 411, 531, 587
FokI	GGATG	1 cut(s)	544
Fsp4HI	GCNGC	6 cut(s)	23, 65, 77, 411, 531, 587
FspBI	CTAG	1 cut(s)	453
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	4 cut(s)	21, 63, 75, 282
GluI	GCNGC	6 cut(s)	23, 65, 77, 411, 531, 587
GsuI	CTGGAG	1 cut(s)	597
HaeII	RGCGCY	2 cut(s)	65, 77
HaeIII	GGCC	3 cut(s)	42, 114, 143
HapII	CCGG	5 cut(s)	54, 101, 110, 140, 185
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	4 cut(s)	22, 64, 76, 283
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	61, 389, 574, 704
Hin6I	GCGC	4 cut(s)	20, 62, 74, 281
HinP1I	GCGC	4 cut(s)	20, 62, 74, 281
HinfI	GANTC	2 cut(s)	153, 538
HpaII	CCGG	5 cut(s)	54, 101, 110, 140, 185
HphI	GGTGA	4 cut(s)	109, 698, 703, 714
Hpy166II	GTNNAC	3 cut(s)	94, 698, 722
Hpy188I	TCNGA	5 cut(s)	38, 152, 179, 432, 611
Hpy188III	TCNNGA	4 cut(s)	290, 453, 542, 595
Hpy8I	GTNNAC	3 cut(s)	94, 698, 722
Hpy99I	CGWCG	2 cut(s)	38, 53
HpyAV	CCTTC	4 cut(s)	387, 465, 562, 601
HpyCH4IV	ACGT	5 cut(s)	12, 96, 168, 330, 655
HpyCH4V	TGCA	7 cut(s)	79, 313, 322, 327, 488, 533, 729
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 59, 73, 82, 319, 410
HpyF3I	CTNAG	2 cut(s)	405, 429
HpySE526I	ACGT	5 cut(s)	12, 96, 168, 330, 655
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	61, 389, 574, 704
HspAI	GCGC	4 cut(s)	20, 62, 74, 281
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	179, 418, 494
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	3 cut(s)	82, 180, 359
Lsp1109I	GCAGC	6 cut(s)	9, 51, 63, 397, 517, 573
LweI	GCATC	2 cut(s)	292, 391
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	5 cut(s)	12, 96, 168, 330, 655
MalI	GATC	3 cut(s)	181, 420, 496
MboI	GATC	3 cut(s)	179, 418, 494
MboII	GAAGA	1 cut(s)	214
MflI	RGATCY	1 cut(s)	494
MluCI	AATT	3 cut(s)	390, 643, 711
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	5 cut(s)	16, 175, 266, 396, 472
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	1 cut(s)	642
MspI	CCGG	5 cut(s)	54, 101, 110, 140, 185
MspR9I	CCNGG	4 cut(s)	111, 140, 185, 208
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	6 cut(s)	39, 59, 73, 82, 319, 410
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	3 cut(s)	111, 140, 185
NdeII	GATC	3 cut(s)	179, 418, 494
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	4 cut(s)	61, 389, 574, 704
NlaIV	GGNNCC	1 cut(s)	176
NmeAIII	GCCGAG	1 cut(s)	260
NsbI	TGCGCA	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	227
PctI	GAATGC	1 cut(s)	271
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	538
Pfl23II	CGTACG	2 cut(s)	9, 652
PkrI	GCNGC	6 cut(s)	24, 66, 78, 412, 532, 588
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
Ppu21I	YACGTR	2 cut(s)	13, 97
PpuMI	RGGWCCY	1 cut(s)	629
Psp5II	RGGWCCY	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspLI	CGTACG	2 cut(s)	9, 652
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	5 cut(s)	112, 142, 239, 298, 629
PspPPI	RGGWCCY	1 cut(s)	629
PstI	CTGCAG	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	4 cut(s)	11, 29, 654, 670
RsaNI	GTAC	4 cut(s)	10, 28, 653, 669
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	6 cut(s)	23, 65, 77, 411, 531, 587
Sau3AI	GATC	3 cut(s)	179, 418, 494
Sau96I	GGNCC	5 cut(s)	112, 142, 239, 298, 629
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	4 cut(s)	111, 140, 185, 208
SfaNI	GCATC	2 cut(s)	292, 391
SfcI	CTRYAG	1 cut(s)	77
SinI	GGWCC	3 cut(s)	239, 298, 629
Sse9I	AATT	3 cut(s)	390, 643, 711
SseBI	AGGCCT	1 cut(s)	42
SsiI	CCGC	1 cut(s)	301
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	42
StyD4I	CCNGG	4 cut(s)	109, 138, 183, 206
StyI	CCWWGG	1 cut(s)	662
TaiI	ACGT	5 cut(s)	15, 99, 171, 333, 658
TaqI	TCGA	2 cut(s)	349, 675
TasI	AATT	3 cut(s)	390, 643, 711
TatI	WGTACW	1 cut(s)	668
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	3 cut(s)	329, 540, 622
TseI	GCWGC	6 cut(s)	22, 64, 76, 410, 530, 586
TspDTI	ATGAA	1 cut(s)	202
TspRI	CASTG	3 cut(s)	329, 540, 622
VpaK11BI	GGWCC	3 cut(s)	239, 298, 629
XapI	RAATTY	1 cut(s)	711
XbaI	TCTAGA	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	2 cut(s)	266, 568
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.