Rh2DG088600

Prolyl oligopeptidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013157
Physical Location & Seq
Reverse (-)
6872122 .. 6874655
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG088600.1

Sequence Viewer

Length: 960 bp
ATGGTGTCGTACGTGAGTGTGTTGCTGTACGGCGTCGGAGGCCTTGTCGTCGCCGGCATGGCGCTGCTGGTGGCGCTGCAGGAGCGACTGGTCTACGTGCCGGTCTTACCGGGCCTCACCAAGTCCTACCCTATAACCCCGGCCCGTCTCCGGCTCACTTACGAGGACGTTTGGCTCCGATCCCCGGACGGCGTTCGCCTCCACGCCTGGTTCATCAAGCTCTTCCCCGACTGCCGAGGTCCAACGCTTTTGTTTTTCCAAGAGAATGCTGGAAATATTGCGCATCGTCTTGAAATGGTCCGCATAATGTTGCAAAAGTTGCAGTGCAACGTGTTTATGCTCTCATATCGAGGTTATGGAGCAAGTGAGGGATTTCCTTCTCAACATGGAATTACTAAAGATGCTCAGGCTGCGTTGGATCATCTTTCTCAGAGGACTGACATTGACACATCTAGAATAGTTGTCTTTGGAAGGTCGCTTGGGGGTGCAGTTGGATCTGTGGTTGCTAAAAACAACCCCGATAAGGTTGCTGCACTGATTCTTGAAAACACCTTCACATCCATTTTGGACATGGCTGGAGTTTTGCTGCCCTTCCTGAAGTATTTTATCGGAGGCAGTGCTTTCAAAGGTCCTAAAATCCTTAATTTCCTCGTACGTTCTCCTTGGAGTACAATCGATGTCATTGGTGAGGTTAAGCAGCCGATCATATTTCTCTCTGGTTTGCAAGATGAGATGATTCCCCCGATCCACATGCAAATGCTGTATGCTAAAGCAGCTGCTCATAATAGGCAATGTTTTTTTGTGGAATTTCCTGACGGTATGCATATGGATACTTGGCTCTCTGGTGGTGATCATTATTGGAGAACAATCAAAGAGTTTCTTAAAAAGCATGTTCCAGAGGGACAAGATGATGAATCATCAAAGAATGATACCAGTGAGTTTTGTTTGTCTAAGAATTAA

Protein Analysis

319

Amino Acids

35.6

Weight (kDa)

7.72

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 104 - 197 5.3e-09 alpha/beta hydrolase fold
Hydrolase_4 PF12146 104 - 207 2.4e-09 Serine aminopeptidase, S33
Peptidase_S9 PF00326 132 - 297 4.3e-11 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20520
fragaria_vesca FvH4_1g08150 FvH4_1g08150
malus_domestica MD02G1086100.v1.1 MD15G1213300.v1.1
prunus_persica Prupe.7G203600_v2.0.a1 Prupe.7G203600_v2.0.a1
pyrus_communis pycom02g06930 pycom15g18970
rosa_chinensis RchiOBHm_Chr2g0094221
rosa_laevigata RLG00000016467
rosa_multiflora Rmu_sc0002193.1_g000008
rosa_roxburghii Rroxscaffold_2G00147360
rosa_rugosa Rorug02G0041900
rosa_samantha Rh2AG089700 Rh2BG089800 Rh2CG092300 Rh2DG088600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 282
AccI GTMKAC 1 cut(s) 93
AciI CCGC 1 cut(s) 301
AclWI GGATC 4 cut(s) 174, 426, 502, 739
AcsI RAATTY 1 cut(s) 806
AcuI CTGAAG 1 cut(s) 617
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 4 cut(s) 11, 29, 654, 670
AfiI CCNNNNNNNGG 3 cut(s) 150, 184, 523
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 3 cut(s) 293, 545, 625
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 2 cut(s) 220, 776
AluI AGCT 2 cut(s) 220, 776
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 4 cut(s) 174, 426, 502, 739
AoxI GGCC 3 cut(s) 40, 112, 141
ApeKI GCWGC 8 cut(s) 64, 76, 410, 530, 586, 697, 773, 776
ApoI RAATTY 1 cut(s) 806
AspLEI GCGC 3 cut(s) 64, 76, 283
AspS9I GGNCC 5 cut(s) 112, 142, 239, 298, 629
AsuC2I CCSGG 3 cut(s) 111, 140, 185
AsuHPI GGTGA 3 cut(s) 109, 698, 860
AvaII GGWCC 3 cut(s) 239, 298, 629
BbvI GCAGC 8 cut(s) 51, 63, 397, 517, 573, 709, 763, 785
BceAI ACGGC 2 cut(s) 46, 205
BcgI CGANNNNNNTGC 4 cut(s) 509, 543, 733, 767
BciT130I CCWGG 1 cut(s) 208
BciVI GTATCC 1 cut(s) 823
BclI TGATCA 1 cut(s) 850
BcnI CCSGG 3 cut(s) 111, 140, 185
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 453
BfmI CTRYAG 1 cut(s) 77
BfoI RGCGCY 2 cut(s) 65, 77
BfuI GTATCC 1 cut(s) 823
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 8 cut(s) 65, 77, 411, 531, 587, 698, 774, 777
BlsI GCNGC 8 cut(s) 66, 78, 412, 532, 588, 699, 775, 778
Bme1390I CCNGG 4 cut(s) 111, 140, 185, 208
Bme18I GGWCC 3 cut(s) 239, 298, 629
BmgT120I GGNCC 5 cut(s) 112, 142, 239, 298, 629
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 4 cut(s) 111, 140, 185, 208
BmsI GCATC 2 cut(s) 292, 391
BpmI CTGGAG 1 cut(s) 597
Bpu10I CCTNAGC 1 cut(s) 405
BpuMI CCSGG 3 cut(s) 111, 140, 185
Bsa29I ATCGAT 1 cut(s) 675
BsaAI YACGTR 2 cut(s) 13, 97
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 4 cut(s) 138, 183, 235, 662
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 184, 523
Bse118I RCCGGY 2 cut(s) 53, 100
Bse1I ACTGG 2 cut(s) 93, 933
Bse3DI GCAATG 1 cut(s) 797
BseBI CCWGG 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 675
BseDI CCNNGG 4 cut(s) 138, 183, 235, 662
BseGI GGATG 1 cut(s) 557
BseLI CCNNNNNNNGG 3 cut(s) 150, 184, 523
BseMI GCAATG 1 cut(s) 797
BseMII CTCAG 2 cut(s) 419, 443
BseNI ACTGG 2 cut(s) 93, 933
BseXI GCAGC 8 cut(s) 51, 63, 397, 517, 573, 709, 763, 785
BsgI GTGCAG 2 cut(s) 507, 516
BshFI GGCC 3 cut(s) 42, 114, 143
BshVI ATCGAT 1 cut(s) 675
BsiSI CCGG 6 cut(s) 54, 101, 110, 140, 151, 185
BsiWI CGTACG 2 cut(s) 9, 652
BslFI GGGAC 1 cut(s) 915
BslI CCNNNNNNNGG 3 cut(s) 150, 184, 523
BsmAI GTCTC 1 cut(s) 152
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 915
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 3 cut(s) 42, 114, 143
Bsp143I GATC 6 cut(s) 179, 418, 494, 702, 744, 850
BspACI CCGC 1 cut(s) 301
BspANI GGCC 3 cut(s) 42, 114, 143
BspCNI CTCAG 2 cut(s) 418, 442
BspDI ATCGAT 1 cut(s) 675
BspLI GGNNCC 1 cut(s) 176
BspMAI CTGCAG 1 cut(s) 81
BspPI GGATC 4 cut(s) 174, 426, 502, 739
BspQI GCTCTTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 797
BsrFI RCCGGY 2 cut(s) 53, 100
BsrI ACTGG 2 cut(s) 93, 933
BssAI RCCGGY 2 cut(s) 53, 100
BssECI CCNNGG 4 cut(s) 138, 183, 235, 662
BssMI GATC 6 cut(s) 179, 418, 494, 702, 744, 850
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 662
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 818
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 319
BstBAI YACGTR 2 cut(s) 13, 97
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 3 cut(s) 405, 429, 951
BstF5I GGATG 1 cut(s) 557
BstH2I RGCGCY 2 cut(s) 65, 77
BstHHI GCGC 3 cut(s) 64, 76, 283
BstKTI GATC 6 cut(s) 182, 421, 497, 705, 747, 853
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 6 cut(s) 179, 418, 494, 702, 744, 850
BstMWI GCNNNNNNNGC 7 cut(s) 39, 59, 73, 82, 319, 410, 773
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 2 cut(s) 754, 893
BstSCI CCNGG 4 cut(s) 109, 138, 183, 206
BstSFI CTRYAG 1 cut(s) 77
BstV1I GCAGC 8 cut(s) 51, 63, 397, 517, 573, 709, 763, 785
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
Bsu15I ATCGAT 1 cut(s) 675
BsuI GTATCC 1 cut(s) 823
BsuRI GGCC 3 cut(s) 42, 114, 143
BsuTUI ATCGAT 1 cut(s) 675
BtsCI GGATG 1 cut(s) 557
BtsI GCAGTG 2 cut(s) 329, 622
BtsIMutI CAGTG 4 cut(s) 329, 533, 622, 940
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 3 cut(s) 64, 76, 283
Cfr10I RCCGGY 2 cut(s) 53, 100
Cfr13I GGNCC 5 cut(s) 112, 142, 239, 298, 629
ClaI ATCGAT 1 cut(s) 675
CseI GACGC 1 cut(s) 22
Csp6I GTAC 4 cut(s) 10, 28, 653, 669
CviAII CATG 5 cut(s) 58, 386, 571, 751, 890
CviQI GTAC 4 cut(s) 10, 28, 653, 669
DdeI CTNAG 3 cut(s) 405, 429, 951
DpnI GATC 6 cut(s) 181, 420, 496, 704, 746, 852
DpnII GATC 6 cut(s) 179, 418, 494, 702, 744, 850
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 662
Eco147I AGGCCT 1 cut(s) 42
Eco47I GGWCC 3 cut(s) 239, 298, 629
Eco57I CTGAAG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 662
EcoT22I ATGCAT 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 662
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 5 cut(s) 61, 389, 574, 754, 893
FalI AAGNNNNNCTT 2 cut(s) 864, 896
FaqI GGGAC 1 cut(s) 915
FatI CATG 5 cut(s) 57, 385, 570, 750, 889
FauNDI CATATG 1 cut(s) 825
FbaI TGATCA 1 cut(s) 850
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 8 cut(s) 65, 77, 411, 531, 587, 698, 774, 777
FokI GGATG 1 cut(s) 544
Fsp4HI GCNGC 8 cut(s) 65, 77, 411, 531, 587, 698, 774, 777
FspBI CTAG 1 cut(s) 453
FspI TGCGCA 1 cut(s) 282
GlaI GCGC 3 cut(s) 63, 75, 282
GluI GCNGC 8 cut(s) 65, 77, 411, 531, 587, 698, 774, 777
GsuI CTGGAG 1 cut(s) 597
HaeII RGCGCY 2 cut(s) 65, 77
HaeIII GGCC 3 cut(s) 42, 114, 143
HapII CCGG 6 cut(s) 54, 101, 110, 140, 151, 185
HgaI GACGC 1 cut(s) 22
HhaI GCGC 3 cut(s) 64, 76, 283
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 5 cut(s) 61, 389, 574, 754, 893
Hin6I GCGC 3 cut(s) 62, 74, 281
HinP1I GCGC 3 cut(s) 62, 74, 281
HinfI GANTC 3 cut(s) 538, 736, 914
HpaII CCGG 6 cut(s) 54, 101, 110, 140, 151, 185
HphI GGTGA 3 cut(s) 109, 698, 860
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 4 cut(s) 38, 179, 432, 611
Hpy188III TCNNGA 6 cut(s) 290, 453, 542, 595, 812, 896
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 2 cut(s) 38, 53
HpyAV CCTTC 4 cut(s) 387, 465, 562, 601
HpyCH4III ACNGT 1 cut(s) 818
HpyCH4IV ACGT 5 cut(s) 12, 96, 168, 330, 655
HpyCH4V TGCA 9 cut(s) 79, 313, 322, 327, 488, 533, 724, 754, 823
HpyF10VI GCNNNNNNNGC 7 cut(s) 39, 59, 73, 82, 319, 410, 773
HpyF3I CTNAG 3 cut(s) 405, 429, 951
HpySE526I ACGT 5 cut(s) 12, 96, 168, 330, 655
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 5 cut(s) 61, 389, 574, 754, 893
HspAI GCGC 3 cut(s) 62, 74, 281
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 6 cut(s) 179, 418, 494, 702, 744, 850
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 3 cut(s) 82, 180, 359
Lsp1109I GCAGC 8 cut(s) 51, 63, 397, 517, 573, 709, 763, 785
LweI GCATC 2 cut(s) 292, 391
MaeI CTAG 1 cut(s) 453
MaeII ACGT 5 cut(s) 12, 96, 168, 330, 655
MalI GATC 6 cut(s) 181, 420, 496, 704, 746, 852
MboI GATC 6 cut(s) 179, 418, 494, 702, 744, 850
MboII GAAGA 1 cut(s) 214
MflI RGATCY 1 cut(s) 494
MluCI AATT 4 cut(s) 390, 643, 806, 955
MmeI TCCRAC 4 cut(s) 16, 266, 396, 472
Mph1103I ATGCAT 1 cut(s) 825
MroNI GCCGGC 1 cut(s) 53
MseI TTAA 4 cut(s) 642, 693, 882, 958
MslI CAYNNNNRTG 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 6 cut(s) 54, 101, 110, 140, 151, 185
MspR9I CCNGG 4 cut(s) 111, 140, 185, 208
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 7 cut(s) 39, 59, 73, 82, 319, 410, 773
NaeI GCCGGC 1 cut(s) 55
NciI CCSGG 3 cut(s) 111, 140, 185
NdeI CATATG 1 cut(s) 825
NdeII GATC 6 cut(s) 179, 418, 494, 702, 744, 850
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 5 cut(s) 61, 389, 574, 754, 893
NlaIV GGNNCC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 260
NsbI TGCGCA 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 825
NspI RCATGY 2 cut(s) 754, 893
PceI AGGCCT 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 227
PctI GAATGC 1 cut(s) 271
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 3 cut(s) 538, 736, 914
Pfl23II CGTACG 2 cut(s) 9, 652
PkrI GCNGC 8 cut(s) 66, 78, 412, 532, 588, 699, 775, 778
Ppu21I YACGTR 2 cut(s) 13, 97
PpuMI RGGWCCY 1 cut(s) 629
Psp5II RGGWCCY 1 cut(s) 629
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspLI CGTACG 2 cut(s) 9, 652
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 5 cut(s) 112, 142, 239, 298, 629
PspPPI RGGWCCY 1 cut(s) 629
PstI CTGCAG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 494
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 4 cut(s) 11, 29, 654, 670
RsaNI GTAC 4 cut(s) 10, 28, 653, 669
RseI CAYNNNNRTG 1 cut(s) 755
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 4 cut(s) 642, 693, 882, 958
SatI GCNGC 8 cut(s) 65, 77, 411, 531, 587, 698, 774, 777
Sau3AI GATC 6 cut(s) 179, 418, 494, 702, 744, 850
Sau96I GGNCC 5 cut(s) 112, 142, 239, 298, 629
ScrFI CCNGG 4 cut(s) 111, 140, 185, 208
SfaNI GCATC 2 cut(s) 292, 391
SfcI CTRYAG 1 cut(s) 77
SinI GGWCC 3 cut(s) 239, 298, 629
SmiMI CAYNNNNRTG 1 cut(s) 755
Sse9I AATT 4 cut(s) 390, 643, 806, 955
SseBI AGGCCT 1 cut(s) 42
SsiI CCGC 1 cut(s) 301
SspI AATATT 1 cut(s) 277
SspMI CTAG 1 cut(s) 453
StuI AGGCCT 1 cut(s) 42
StyD4I CCNGG 4 cut(s) 109, 138, 183, 206
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 1 cut(s) 818
TaiI ACGT 5 cut(s) 15, 99, 171, 333, 658
TaqI TCGA 2 cut(s) 349, 675
TasI AATT 4 cut(s) 390, 643, 806, 955
TatI WGTACW 1 cut(s) 668
TfiI GAWTC 3 cut(s) 538, 736, 914
Tru1I TTAA 4 cut(s) 642, 693, 882, 958
Tru9I TTAA 4 cut(s) 642, 693, 882, 958
TscAI CASTG 4 cut(s) 329, 540, 622, 940
TseI GCWGC 8 cut(s) 64, 76, 410, 530, 586, 697, 773, 776
TspDTI ATGAA 2 cut(s) 202, 927
TspRI CASTG 4 cut(s) 329, 540, 622, 940
VpaK11BI GGWCC 3 cut(s) 239, 298, 629
XapI RAATTY 1 cut(s) 806
XbaI TCTAGA 1 cut(s) 452
XceI RCATGY 2 cut(s) 754, 893
XcmI CCANNNNNNNNNTGG 2 cut(s) 266, 568
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 1 cut(s) 453
Zsp2I ATGCAT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.