MD15G1213300.v1.1

Prolyl oligopeptidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013157
Physical Location & Seq
Reverse (-)
17118247 .. 17121661
3415 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1213300.v1.1.491

Sequence Viewer

Length: 951 bp
ATGGTGTCGTACGTGAACGCGCTGCTGTACGGGGTGGGCGGCCTGGTGGTGGCCGGCATGGCATTGCTCGTCGCCCTCCAGGAGCGGCTTGTCTACGTCCCCGTCCTGCCGGGTCTCACCAAGTCCTACCCGATTACCCCCGCCCGCCTACGCCTTACTTACGAGGACGTCTGGCTCCACTCCTCCGACGGCGTTCGCCTCCACGCTTGGTTCATCAAGCTCTTCCCCCACTGCAGAGGTCCAACCCTCTTGTTTTTCCAAGAAAATGCTGGAAACATTGCTCATCGCCTCGAAATGGTCCGGATAATGTTACAGAAATTGCAATGTAACGTGTTCATGCTTTCATATCGAGGTTATGGAGCAAGTGAAGGATATCCTTCTCAGCATGGGATCATAAAAGATGCTCAGGTTGCATTGGATCATCTTTCTCAGAGGACTGACATTGACACATCTAGAATAGTTGTCTTTGGAAGGTCACTTGGTGGTGCTGTTGGAACTGTGGTCACTAAAAACAACCCTGATAAGGTTGCTGCACTGATAGTGGAAAACACCTTCACATCTATTTTGGACATGGCTGGAGTTTTACTCCCTTTCTTGAAGTGGTTTATTGGAGGCAGTGGTTCAAAAGGTCCTAAAGCACTTAATTTTCTTGTACGGTCTCCTTGGAGTACAATTGATGTCATTGGTGAGGTTAAGCAGCCAATCCTCTTTCTCTCCGGCTTGCAAGATGAGATGATTCCTCCGTCCCATATGCAAATGCTGTATGCCAAAGCAGCTGCCCATAATAAGCAGTGTGTTTTTGTGGAATTTCCCACTGGCATGCATATGGATACTTGGCTCACTGGTGGTGATAATTATTGGAGAACGGTCCAGGAGTTTCTTCAACAACATGTTCCAGCAAAAAATGATGATGAATCGTCTCACACTGATAGAGATGTGGGGGCAAAGTGA

Protein Analysis

317

Amino Acids

35.06

Weight (kDa)

7.79

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 104 - 202 3.8e-09 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 104 - 202 3.4e-08 alpha/beta hydrolase fold
Peptidase_S9 PF00326 132 - 297 7.2e-13 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20520
fragaria_vesca FvH4_1g08150 FvH4_1g08150
malus_domestica MD02G1086100.v1.1 MD15G1213300.v1.1
prunus_persica Prupe.7G203600_v2.0.a1 Prupe.7G203600_v2.0.a1
pyrus_communis pycom02g06930 pycom15g18970
rosa_chinensis RchiOBHm_Chr2g0094221
rosa_laevigata RLG00000016467
rosa_multiflora Rmu_sc0002193.1_g000008
rosa_roxburghii Rroxscaffold_2G00147360
rosa_rugosa Rorug02G0041900
rosa_samantha Rh2AG089700 Rh2BG089800 Rh2CG092300 Rh2DG088600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
AccBSI CCGCTC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 93
AccII CGCG 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 300
AciI CCGC 4 cut(s) 39, 85, 141, 145
AclWI GGATC 2 cut(s) 398, 426
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 806
AcyI GRCGYC 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 4 cut(s) 11, 29, 654, 670
AfiI CCNNNNNNNGG 3 cut(s) 49, 295, 523
AflIII ACRYGT 2 cut(s) 330, 889
AgsI TTSAA 3 cut(s) 598, 624, 884
AjnI CCWGG 3 cut(s) 42, 78, 870
AluBI AGCT 2 cut(s) 220, 776
AluI AGCT 2 cut(s) 220, 776
Alw26I GTCTC 3 cut(s) 119, 663, 924
AlwI GGATC 2 cut(s) 398, 426
Aor13HI TCCGGA 1 cut(s) 300
AoxI GGCC 2 cut(s) 40, 51
ApeKI GCWGC 5 cut(s) 22, 530, 697, 773, 776
ApoI RAATTY 1 cut(s) 806
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 4 cut(s) 239, 298, 629, 868
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 3 cut(s) 109, 698, 860
AvaII GGWCC 4 cut(s) 239, 298, 629, 868
BbvI GCAGC 5 cut(s) 9, 517, 709, 763, 785
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 3 cut(s) 44, 80, 872
BciVI GTATCC 1 cut(s) 823
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 119, 663, 924
BfaI CTAG 1 cut(s) 453
BfmI CTRYAG 1 cut(s) 232
BfuI GTATCC 1 cut(s) 823
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 7 cut(s) 23, 40, 86, 531, 698, 774, 777
BlsI GCNGC 7 cut(s) 24, 41, 87, 532, 699, 775, 778
Bme1390I CCNGG 4 cut(s) 44, 80, 111, 872
Bme18I GGWCC 4 cut(s) 239, 298, 629, 868
BmgT120I GGNCC 4 cut(s) 239, 298, 629, 868
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 4 cut(s) 44, 80, 111, 872
BmsI GCATC 1 cut(s) 391
BplI GAGNNNNNCTC 2 cut(s) 570, 602
BpmI CTGGAG 2 cut(s) 62, 597
Bpu10I CCTNAGC 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 119, 663
BsaJI CCNNGG 1 cut(s) 662
BsaWI WCCGGW 1 cut(s) 300
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 295, 523
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 820, 847
Bse3DI GCAATG 3 cut(s) 62, 276, 329
BseAI TCCGGA 1 cut(s) 300
BseBI CCWGG 3 cut(s) 44, 80, 872
BseDI CCNNGG 1 cut(s) 662
BseLI CCNNNNNNNGG 3 cut(s) 49, 295, 523
BseMI GCAATG 3 cut(s) 62, 276, 329
BseMII CTCAG 3 cut(s) 395, 419, 443
BseNI ACTGG 2 cut(s) 820, 847
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 5 cut(s) 9, 517, 709, 763, 785
BsgI GTGCAG 1 cut(s) 516
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 2 cut(s) 42, 53
BsiSI CCGG 4 cut(s) 54, 110, 301, 717
BsiWI CGTACG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 83, 730
BslI CCNNNNNNNGG 3 cut(s) 49, 295, 523
BsmAI GTCTC 3 cut(s) 119, 663, 924
BsmBI CGTCTC 1 cut(s) 924
BsmFI GGGAC 2 cut(s) 83, 730
BsnI GGCC 2 cut(s) 42, 53
Bso31I GGTCTC 2 cut(s) 119, 663
Bsp13I TCCGGA 1 cut(s) 300
Bsp143I GATC 2 cut(s) 390, 418
BspACI CCGC 4 cut(s) 39, 85, 141, 145
BspANI GGCC 2 cut(s) 42, 53
BspCNI CTCAG 3 cut(s) 394, 418, 442
BspEI TCCGGA 1 cut(s) 300
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 176
BspMAI CTGCAG 1 cut(s) 236
BspPI GGATC 2 cut(s) 398, 426
BspQI GCTCTTC 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 119, 663
BsrBI CCGCTC 1 cut(s) 85
BsrDI GCAATG 3 cut(s) 62, 276, 329
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 2 cut(s) 820, 847
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 662
BssMI GATC 2 cut(s) 390, 418
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 662
Bst2UI CCWGG 3 cut(s) 44, 80, 872
Bst4CI ACNGT 3 cut(s) 499, 657, 868
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 13
BstC8I GCNNGC 4 cut(s) 55, 145, 722, 821
BstDEI CTNAG 3 cut(s) 381, 405, 429
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 2 cut(s) 393, 421
BstMAI GTCTC 3 cut(s) 119, 663, 924
BstMBI GATC 2 cut(s) 390, 418
BstMWI GCNNNNNNNGC 3 cut(s) 59, 410, 773
BstNI CCWGG 3 cut(s) 44, 80, 872
BstNSI RCATGY 2 cut(s) 823, 893
BstSCI CCNGG 4 cut(s) 42, 78, 109, 870
BstSFI CTRYAG 1 cut(s) 232
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 5 cut(s) 9, 517, 709, 763, 785
BsuI GTATCC 1 cut(s) 823
BsuRI GGCC 2 cut(s) 42, 53
BtgZI GCGATG 1 cut(s) 269
BtsI GCAGTG 3 cut(s) 229, 622, 797
BtsIMutI CAGTG 7 cut(s) 229, 533, 622, 797, 813, 840, 924
Cac8I GCNNGC 4 cut(s) 55, 145, 722, 821
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 239, 298, 629, 868
Csp6I GTAC 4 cut(s) 10, 28, 653, 669
CviAII CATG 6 cut(s) 58, 337, 386, 571, 820, 890
CviQI GTAC 4 cut(s) 10, 28, 653, 669
DdeI CTNAG 3 cut(s) 381, 405, 429
DpnI GATC 2 cut(s) 392, 420
DpnII GATC 2 cut(s) 390, 418
DraIII CACNNNGTG 1 cut(s) 482
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 662
Eco31I GGTCTC 2 cut(s) 119, 663
Eco32I GATATC 1 cut(s) 374
Eco47I GGWCC 4 cut(s) 239, 298, 629, 868
EcoO109I RGGNCCY 1 cut(s) 629
EcoRII CCWGG 3 cut(s) 42, 78, 870
EcoRV GATATC 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 662
EcoT22I ATGCAT 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 662
Esp3I CGTCTC 1 cut(s) 924
FaeI CATG 6 cut(s) 61, 340, 389, 574, 823, 893
FaqI GGGAC 2 cut(s) 83, 730
FatI CATG 6 cut(s) 57, 336, 385, 570, 819, 889
FauI CCCGC 2 cut(s) 148, 152
FauNDI CATATG 2 cut(s) 750, 825
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 7 cut(s) 23, 40, 86, 531, 698, 774, 777
Fsp4HI GCNGC 7 cut(s) 23, 40, 86, 531, 698, 774, 777
FspBI CTAG 1 cut(s) 453
GlaI GCGC 1 cut(s) 21
GluI GCNGC 7 cut(s) 23, 40, 86, 531, 698, 774, 777
GsuI CTGGAG 2 cut(s) 62, 597
HaeIII GGCC 2 cut(s) 42, 53
HapII CCGG 4 cut(s) 54, 110, 301, 717
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 6 cut(s) 61, 340, 389, 574, 823, 893
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 2 cut(s) 736, 914
HpaII CCGG 4 cut(s) 54, 110, 301, 717
HphI GGTGA 3 cut(s) 109, 698, 860
Hpy166II GTNNAC 2 cut(s) 16, 94
Hpy188I TCNGA 2 cut(s) 187, 432
Hpy188III TCNNGA 3 cut(s) 301, 453, 595
Hpy8I GTNNAC 2 cut(s) 16, 94
Hpy99I CGWCG 2 cut(s) 74, 191
HpyAV CCTTC 4 cut(s) 362, 387, 465, 562
HpyCH4III ACNGT 3 cut(s) 499, 657, 868
HpyCH4IV ACGT 4 cut(s) 12, 96, 168, 330
HpyCH4V TGCA 7 cut(s) 234, 322, 413, 533, 724, 754, 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 410, 773
HpyF3I CTNAG 3 cut(s) 381, 405, 429
HpySE526I ACGT 4 cut(s) 12, 96, 168, 330
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 6 cut(s) 61, 340, 389, 574, 823, 893
HspAI GCGC 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 300
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 390, 418
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 3 cut(s) 82, 180, 359
Lsp1109I GCAGC 5 cut(s) 9, 517, 709, 763, 785
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 453
MaeII ACGT 4 cut(s) 12, 96, 168, 330
MaeIII GTNAC 4 cut(s) 309, 326, 474, 502
MalI GATC 2 cut(s) 392, 420
MbiI CCGCTC 1 cut(s) 85
MboI GATC 2 cut(s) 390, 418
MboII GAAGA 2 cut(s) 214, 872
MfeI CAATTG 1 cut(s) 672
MluCI AATT 5 cut(s) 317, 643, 672, 806, 853
MmeI TCCRAC 3 cut(s) 210, 266, 472
Mph1103I ATGCAT 1 cut(s) 825
MroI TCCGGA 1 cut(s) 300
MroNI GCCGGC 1 cut(s) 53
MseI TTAA 2 cut(s) 642, 693
MslI CAYNNNNRTG 2 cut(s) 818, 824
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 4 cut(s) 54, 110, 301, 717
MspR9I CCNGG 4 cut(s) 44, 80, 111, 872
MunI CAATTG 1 cut(s) 672
MvaI CCWGG 3 cut(s) 44, 80, 872
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 59, 410, 773
NaeI GCCGGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 111
NdeI CATATG 2 cut(s) 750, 825
NdeII GATC 2 cut(s) 390, 418
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 6 cut(s) 61, 340, 389, 574, 823, 893
NlaIV GGNNCC 1 cut(s) 176
NmuCI GTSAC 2 cut(s) 474, 502
NsiI ATGCAT 1 cut(s) 825
NspI RCATGY 2 cut(s) 823, 893
PaeI GCATGC 1 cut(s) 823
PciI ACATGT 1 cut(s) 889
PciSI GCTCTTC 1 cut(s) 227
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 736, 914
Pfl23II CGTACG 1 cut(s) 9
PfoI TCCNGGA 2 cut(s) 78, 870
PkrI GCNGC 7 cut(s) 24, 41, 87, 532, 699, 775, 778
Ppu21I YACGTR 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 629
PscI ACATGT 1 cut(s) 889
Psp5II RGGWCCY 1 cut(s) 629
Psp6I CCWGG 3 cut(s) 42, 78, 870
PspGI CCWGG 3 cut(s) 42, 78, 870
PspLI CGTACG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 4 cut(s) 239, 298, 629, 868
PspPPI RGGWCCY 1 cut(s) 629
PstI CTGCAG 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 4 cut(s) 11, 29, 654, 670
RsaNI GTAC 4 cut(s) 10, 28, 653, 669
RseI CAYNNNNRTG 2 cut(s) 818, 824
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 2 cut(s) 642, 693
SatI GCNGC 7 cut(s) 23, 40, 86, 531, 698, 774, 777
Sau3AI GATC 2 cut(s) 390, 418
Sau96I GGNCC 4 cut(s) 239, 298, 629, 868
ScrFI CCNGG 4 cut(s) 44, 80, 111, 872
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 4 cut(s) 239, 298, 629, 868
SmiMI CAYNNNNRTG 2 cut(s) 818, 824
SphI GCATGC 1 cut(s) 823
Sse9I AATT 5 cut(s) 317, 643, 672, 806, 853
SsiI CCGC 4 cut(s) 39, 85, 141, 145
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 4 cut(s) 42, 78, 109, 870
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 3 cut(s) 499, 657, 868
TaiI ACGT 4 cut(s) 15, 99, 171, 333
TaqI TCGA 2 cut(s) 291, 349
TasI AATT 5 cut(s) 317, 643, 672, 806, 853
TatI WGTACW 1 cut(s) 668
TauI GCSGC 2 cut(s) 42, 88
TfiI GAWTC 2 cut(s) 736, 914
Tru1I TTAA 2 cut(s) 642, 693
Tru9I TTAA 2 cut(s) 642, 693
TscAI CASTG 7 cut(s) 236, 540, 622, 797, 820, 847, 931
TseFI GTSAC 2 cut(s) 474, 502
TseI GCWGC 5 cut(s) 22, 530, 697, 773, 776
Tsp45I GTSAC 2 cut(s) 474, 502
TspDTI ATGAA 4 cut(s) 202, 325, 333, 927
TspGWI ACGGA 1 cut(s) 732
TspRI CASTG 7 cut(s) 236, 540, 622, 797, 820, 847, 931
VpaK11BI GGWCC 4 cut(s) 239, 298, 629, 868
XapI RAATTY 1 cut(s) 806
XbaI TCTAGA 1 cut(s) 452
XceI RCATGY 2 cut(s) 823, 893
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 1 cut(s) 453
ZraI GACGTC 1 cut(s) 169
Zsp2I ATGCAT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.