Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002193.1

Orthogroup ID

OG0013157

Physical Location & Seq

Genomic Coordinates Reverse (-)

33369 .. 35893

Gene Structure 2525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002193.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggtgtcgtacgtgagtgcgttgctgtacggcgtcggaggccttgtcgtcgccggcatggcgctgctggtggcgctgcaggagcgactggtctacgtgccggtcttaccgggcctcaccaagtcctaccctatgaccccggcccgtctccggctcacttacgaggacgtttggctccgatccccggacggcgttcgcctccacgcctggttcatcaagctcttccccgactgccgaggtccaacgcttttgtttttccaagagaatgctggaaatattgcgcatcgtcttgaaatggtccgcataatgttgcaaaagttgcagtgcaacgtgtttatgctctcatatcgaggttatggagcaagtgagggatttccttctcaacatggaattactaaagatgctcaggctgcgttggatcatctttctcagaggactgacattgacacatctagaatagttgtcttcggaaggtcgcttgggggtgcagttggatctgtggttgctaaaaacaaccccgataaggttaagcagccgatcatatttctctctggtttgcaagatgagatgattcccccgatccacatgcaaatgctgtatgctaaagcagctgctcataataggcaatgtgtttttgtggaatttcctgacggtatgcatatggatacttggctctctggtggtgatcattattggagaacaatcaaagagtttcttaaaaagcatgttccagagggacaagatgatgaatcatcaaagaatgatgccgatgtggtggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0007275 GO:0008150 GO:0012505 GO:0016020 GO:0019866 GO:0022622 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4 Peptidase_S9

Protein Analysis

260

Amino Acids

29.02

Weight (kDa)

7.12

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20520
fragaria_vesca	FvH4_1g08150 FvH4_1g08150
malus_domestica	MD02G1086100.v1.1 MD15G1213300.v1.1
prunus_persica	Prupe.7G203600_v2.0.a1 Prupe.7G203600_v2.0.a1
pyrus_communis	pycom02g06930 pycom15g18970
rosa_chinensis	RchiOBHm_Chr2g0094221
rosa_laevigata	RLG00000016467
rosa_multiflora	Rmu_sc0002193.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147360
rosa_rugosa	Rorug02G0041900
rosa_samantha	Rh2AG089700 Rh2BG089800 Rh2CG092300 Rh2DG088600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	4 cut(s)	174, 426, 502, 574
AcsI	RAATTY	1 cut(s)	641
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	11, 29
AfiI	CCNNNNNNNGG	3 cut(s)	150, 184, 523
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	2 cut(s)	220, 611
AluI	AGCT	2 cut(s)	220, 611
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	4 cut(s)	174, 426, 502, 574
AoxI	GGCC	3 cut(s)	40, 112, 141
ApeKI	GCWGC	6 cut(s)	64, 76, 410, 532, 608, 611
ApoI	RAATTY	1 cut(s)	641
AspLEI	GCGC	3 cut(s)	64, 76, 283
AspS9I	GGNCC	4 cut(s)	112, 142, 239, 298
AsuC2I	CCSGG	3 cut(s)	111, 140, 185
AsuHPI	GGTGA	2 cut(s)	109, 695
AvaII	GGWCC	2 cut(s)	239, 298
BbsI	GAAGAC	1 cut(s)	457
BbvI	GCAGC	6 cut(s)	51, 63, 397, 544, 598, 620
BceAI	ACGGC	2 cut(s)	46, 205
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BciT130I	CCWGG	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	658
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	3 cut(s)	111, 140, 185
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	77
BfoI	RGCGCY	2 cut(s)	65, 77
BfuI	GTATCC	1 cut(s)	658
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	6 cut(s)	65, 77, 411, 533, 609, 612
BlsI	GCNGC	6 cut(s)	66, 78, 412, 534, 610, 613
Bme1390I	CCNGG	4 cut(s)	111, 140, 185, 208
Bme18I	GGWCC	2 cut(s)	239, 298
BmgT120I	GGNCC	4 cut(s)	112, 142, 239, 298
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	4 cut(s)	111, 140, 185, 208
BmsI	GCATC	3 cut(s)	292, 391, 754
BpiI	GAAGAC	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	405
BpuMI	CCSGG	3 cut(s)	111, 140, 185
BsaAI	YACGTR	2 cut(s)	13, 97
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	138, 183, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 184, 523
Bse118I	RCCGGY	2 cut(s)	53, 100
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	632
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	3 cut(s)	138, 183, 235
BseLI	CCNNNNNNNGG	3 cut(s)	150, 184, 523
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	2 cut(s)	419, 443
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	6 cut(s)	51, 63, 397, 544, 598, 620
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	3 cut(s)	42, 114, 143
BsiSI	CCGG	6 cut(s)	54, 101, 110, 140, 151, 185
BsiWI	CGTACG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	3 cut(s)	150, 184, 523
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	750
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	3 cut(s)	42, 114, 143
Bsp143I	GATC	6 cut(s)	179, 418, 494, 537, 579, 685
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	3 cut(s)	42, 114, 143
BspCNI	CTCAG	2 cut(s)	418, 442
BspLI	GGNNCC	1 cut(s)	176
BspMAI	CTGCAG	1 cut(s)	81
BspPI	GGATC	4 cut(s)	174, 426, 502, 574
BspQI	GCTCTTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	632
BsrFI	RCCGGY	2 cut(s)	53, 100
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	2 cut(s)	53, 100
BssECI	CCNNGG	3 cut(s)	138, 183, 235
BssMI	GATC	6 cut(s)	179, 418, 494, 537, 579, 685
BssNI	GRCGYC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstBAI	YACGTR	2 cut(s)	13, 97
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	3 cut(s)	405, 429, 780
BstH2I	RGCGCY	2 cut(s)	65, 77
BstHHI	GCGC	3 cut(s)	64, 76, 283
BstKTI	GATC	6 cut(s)	182, 421, 497, 540, 582, 688
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	6 cut(s)	179, 418, 494, 537, 579, 685
BstMWI	GCNNNNNNNGC	7 cut(s)	39, 59, 73, 82, 319, 410, 608
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	2 cut(s)	589, 728
BstSCI	CCNGG	4 cut(s)	109, 138, 183, 206
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	6 cut(s)	51, 63, 397, 544, 598, 620
BstV2I	GAAGAC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	658
BsuRI	GGCC	3 cut(s)	42, 114, 143
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	3 cut(s)	64, 76, 283
Cfr10I	RCCGGY	2 cut(s)	53, 100
Cfr13I	GGNCC	4 cut(s)	112, 142, 239, 298
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	10, 28
CviAII	CATG	4 cut(s)	58, 386, 586, 725
CviQI	GTAC	2 cut(s)	10, 28
DdeI	CTNAG	3 cut(s)	405, 429, 780
DpnI	GATC	6 cut(s)	181, 420, 496, 539, 581, 687
DpnII	GATC	6 cut(s)	179, 418, 494, 537, 579, 685
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	42
Eco47I	GGWCC	2 cut(s)	239, 298
EcoRII	CCWGG	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	660
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	4 cut(s)	61, 389, 589, 728
FalI	AAGNNNNNCTT	2 cut(s)	699, 731
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	4 cut(s)	57, 385, 585, 724
FauNDI	CATATG	1 cut(s)	660
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	6 cut(s)	65, 77, 411, 533, 609, 612
Fsp4HI	GCNGC	6 cut(s)	65, 77, 411, 533, 609, 612
FspBI	CTAG	1 cut(s)	453
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	3 cut(s)	63, 75, 282
GluI	GCNGC	6 cut(s)	65, 77, 411, 533, 609, 612
HaeII	RGCGCY	2 cut(s)	65, 77
HaeIII	GGCC	3 cut(s)	42, 114, 143
HapII	CCGG	6 cut(s)	54, 101, 110, 140, 151, 185
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	3 cut(s)	64, 76, 283
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	61, 389, 589, 728
Hin6I	GCGC	3 cut(s)	62, 74, 281
HinP1I	GCGC	3 cut(s)	62, 74, 281
HinfI	GANTC	2 cut(s)	571, 749
HpaII	CCGG	6 cut(s)	54, 101, 110, 140, 151, 185
HphI	GGTGA	2 cut(s)	109, 695
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	38, 179, 432, 470
Hpy188III	TCNNGA	4 cut(s)	290, 453, 647, 731
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	38, 53
HpyAV	CCTTC	2 cut(s)	387, 465
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	4 cut(s)	12, 96, 168, 330
HpyCH4V	TGCA	8 cut(s)	79, 313, 322, 327, 488, 559, 589, 658
HpyF10VI	GCNNNNNNNGC	7 cut(s)	39, 59, 73, 82, 319, 410, 608
HpyF3I	CTNAG	3 cut(s)	405, 429, 780
HpySE526I	ACGT	4 cut(s)	12, 96, 168, 330
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	61, 389, 589, 728
HspAI	GCGC	3 cut(s)	62, 74, 281
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	6 cut(s)	179, 418, 494, 537, 579, 685
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	3 cut(s)	82, 180, 359
Lsp1109I	GCAGC	6 cut(s)	51, 63, 397, 544, 598, 620
LweI	GCATC	3 cut(s)	292, 391, 754
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	4 cut(s)	12, 96, 168, 330
MalI	GATC	6 cut(s)	181, 420, 496, 539, 581, 687
MboI	GATC	6 cut(s)	179, 418, 494, 537, 579, 685
MboII	GAAGA	2 cut(s)	214, 457
MflI	RGATCY	1 cut(s)	494
MluCI	AATT	2 cut(s)	390, 641
MmeI	TCCRAC	4 cut(s)	16, 266, 396, 472
MnlI	CCTC	9 cut(s)	32, 125, 157, 209, 230, 344, 361, 426, 727
Mph1103I	ATGCAT	1 cut(s)	660
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	2 cut(s)	528, 717
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	6 cut(s)	54, 101, 110, 140, 151, 185
MspR9I	CCNGG	4 cut(s)	111, 140, 185, 208
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	7 cut(s)	39, 59, 73, 82, 319, 410, 608
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	3 cut(s)	111, 140, 185
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	6 cut(s)	179, 418, 494, 537, 579, 685
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	4 cut(s)	61, 389, 589, 728
NlaIV	GGNNCC	1 cut(s)	176
NmeAIII	GCCGAG	1 cut(s)	260
NsbI	TGCGCA	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	660
NspI	RCATGY	2 cut(s)	589, 728
PceI	AGGCCT	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	227
PctI	GAATGC	1 cut(s)	271
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	571, 749
Pfl23II	CGTACG	1 cut(s)	9
PkrI	GCNGC	6 cut(s)	66, 78, 412, 534, 610, 613
Ppu21I	YACGTR	2 cut(s)	13, 97
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	4 cut(s)	112, 142, 239, 298
PstI	CTGCAG	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	2 cut(s)	11, 29
RsaNI	GTAC	2 cut(s)	10, 28
RseI	CAYNNNNRTG	1 cut(s)	590
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	528, 717
SatI	GCNGC	6 cut(s)	65, 77, 411, 533, 609, 612
Sau3AI	GATC	6 cut(s)	179, 418, 494, 537, 579, 685
Sau96I	GGNCC	4 cut(s)	112, 142, 239, 298
ScrFI	CCNGG	4 cut(s)	111, 140, 185, 208
SfaNI	GCATC	3 cut(s)	292, 391, 754
SfcI	CTRYAG	1 cut(s)	77
SinI	GGWCC	2 cut(s)	239, 298
SmiMI	CAYNNNNRTG	1 cut(s)	590
Sse9I	AATT	2 cut(s)	390, 641
SseBI	AGGCCT	1 cut(s)	42
SsiI	CCGC	1 cut(s)	301
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	42
StyD4I	CCNGG	4 cut(s)	109, 138, 183, 206
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	4 cut(s)	15, 99, 171, 333
TaqI	TCGA	1 cut(s)	349
TasI	AATT	2 cut(s)	390, 641
TfiI	GAWTC	2 cut(s)	571, 749
Tru1I	TTAA	2 cut(s)	528, 717
Tru9I	TTAA	2 cut(s)	528, 717
TscAI	CASTG	1 cut(s)	329
TseI	GCWGC	6 cut(s)	64, 76, 410, 532, 608, 611
TspDTI	ATGAA	2 cut(s)	202, 762
TspRI	CASTG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	239, 298
XapI	RAATTY	1 cut(s)	641
XbaI	TCTAGA	1 cut(s)	452
XceI	RCATGY	2 cut(s)	589, 728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.