pycom15g18970

Prolyl oligopeptidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013157
Physical Location & Seq
Reverse (-)
13444250 .. 13447168
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g18970.4

Sequence Viewer

Length: 1074 bp
ATGGTGTCGTACGTGAACGCGCTGCTGTACGGGGTGGGCGGCCTGGTGGTGGCCGGCATGGCATTGCTTGTCGCCCTCCAGGAGCGGCTTGTCTACGTCCCCGTCCTGCCGGGTCTCACCAAGTCCTACCCGATTACCCCCGCCCGCCTACGCCTCACTTACGAGGACGTCTGGCTCCAGTCCTCCGACGGCGTTCGCCTTCACGCTTGGTTCATCAAGCTCTTCCCCCACTGCCGAGGTCCAACCCTCTTGTTTTTCCAAGAAAATGCTGGAAACATTGCTCATCGCCTCGAAATGGTCCGGATAATGTTACAGAAATTGCAATGTAACGTGTTCATGCTTTCATATCGAGGTTATGGAGCAAGTGAAGGATATCCTTCTCAGCATGGGATCATAAAAGATGCTCAAAGGACTGACATTGACACATCTAGAATAGTTGTCTTTGGAAGGTCACTTGGTGGTGCTGTTGGAACTGTGGTTACTAAAAACAACCCTGATAAGGTTGCTGCACTGATAGTGGAAAACACCTTCACATCTATTTTGGACATGGCTGGAGTTTTACTCCCTTTCTTGAAGTGGTTTATTGGAGGCAGTGGTTCAAAAGGTCCTAAAGCACTTAATTTTCTCGTACGGTCTCCTTGGAGTACAATTGATGTCATTGGTGAGGTTAAGCAGCCAATCCTCTTTCTCTCCGGCTTGCAAGATGAGATGATTCCTCCGTCCCATATGCAAATGCTGTATGCCAAAGCAGCTGCCCATAATAAGCGGTGTGTTTTTGTGGAATTTCCCACTGGCATGCATATGGATACTTGGCTCACTGGTGGTGATAATTATTGGAGAACGGTCCAGGAGTTTCTTCAACAACATGTTCCAGCAAAAAACGATGATGAATCGTCTCACACTGATAGCGGTGGGGGCAAAGTGATTGGATGGATGTTAGACTTGTTCAAGCAATCTGATTGGCTCCTCACTCATCACAATCTGAACCGTTTTCTGAAGCTGCAGCAATTGAAAGCTCTCTTTGAGGGGCCGTTCTGCAAAGACCGCTGCAACTATTCAGGTCTTCCCTGTTGA

Protein Analysis

358

Amino Acids

39.89

Weight (kDa)

8.8

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20520
fragaria_vesca FvH4_1g08150 FvH4_1g08150
malus_domestica MD02G1086100.v1.1 MD15G1213300.v1.1
prunus_persica Prupe.7G203600_v2.0.a1 Prupe.7G203600_v2.0.a1
pyrus_communis pycom02g06930 pycom15g18970
rosa_chinensis RchiOBHm_Chr2g0094221
rosa_laevigata RLG00000016467
rosa_multiflora Rmu_sc0002193.1_g000008
rosa_roxburghii Rroxscaffold_2G00147360
rosa_rugosa Rorug02G0041900
rosa_samantha Rh2AG089700 Rh2BG089800 Rh2CG092300 Rh2DG088600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
AccBSI CCGCTC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 93
AccII CGCG 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 300
AciI CCGC 7 cut(s) 39, 85, 141, 145, 766, 909, 1045
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 1 cut(s) 1016
AcyI GRCGYC 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 4 cut(s) 11, 29, 630, 646
AfiI CCNNNNNNNGG 3 cut(s) 49, 295, 499
AflIII ACRYGT 2 cut(s) 330, 865
AgsI TTSAA 5 cut(s) 574, 600, 860, 949, 1012
AjnI CCWGG 3 cut(s) 42, 78, 846
AluBI AGCT 4 cut(s) 220, 752, 1000, 1016
AluI AGCT 4 cut(s) 220, 752, 1000, 1016
Alw26I GTCTC 3 cut(s) 119, 639, 900
AlwI GGATC 1 cut(s) 398
Aor13HI TCCGGA 1 cut(s) 300
AoxI GGCC 3 cut(s) 40, 51, 1028
ApeKI GCWGC 8 cut(s) 22, 506, 673, 749, 752, 1000, 1003, 1047
ApoI RAATTY 1 cut(s) 782
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 5 cut(s) 239, 298, 605, 844, 1028
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 3 cut(s) 109, 674, 836
AvaII GGWCC 4 cut(s) 239, 298, 605, 844
BbsI GAAGAC 1 cut(s) 1055
BbvI GCAGC 8 cut(s) 9, 493, 685, 739, 761, 987, 1015, 1034
BccI CCATC 1 cut(s) 924
BceAI ACGGC 2 cut(s) 205, 1015
BciT130I CCWGG 3 cut(s) 44, 80, 848
BciVI GTATCC 1 cut(s) 799
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 119, 639, 900
BfaI CTAG 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 1001
BfuI GTATCC 1 cut(s) 799
BglI GCCNNNNNGGC 1 cut(s) 59
Bme1390I CCNGG 4 cut(s) 44, 80, 111, 848
Bme18I GGWCC 4 cut(s) 239, 298, 605, 844
BmgT120I GGNCC 5 cut(s) 239, 298, 605, 844, 1028
BmiI GGNNCC 3 cut(s) 176, 965, 1029
BmrFI CCNGG 4 cut(s) 44, 80, 111, 848
BmsI GCATC 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 1055
BplI GAGNNNNNCTC 2 cut(s) 546, 578
BpmI CTGGAG 3 cut(s) 62, 161, 573
BpuMI CCSGG 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 119, 639
BsaJI CCNNGG 2 cut(s) 235, 638
BsaWI WCCGGW 1 cut(s) 300
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 295, 499
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 3 cut(s) 178, 796, 823
Bse3DI GCAATG 3 cut(s) 62, 276, 329
BseAI TCCGGA 1 cut(s) 300
BseBI CCWGG 3 cut(s) 44, 80, 848
BseDI CCNNGG 2 cut(s) 235, 638
BseGI GGATG 2 cut(s) 935, 939
BseLI CCNNNNNNNGG 3 cut(s) 49, 295, 499
BseMI GCAATG 3 cut(s) 62, 276, 329
BseMII CTCAG 1 cut(s) 395
BseNI ACTGG 3 cut(s) 178, 796, 823
BseRI GAGGAG 1 cut(s) 956
BseXI GCAGC 8 cut(s) 9, 493, 685, 739, 761, 987, 1015, 1034
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 3 cut(s) 42, 53, 1030
BsiSI CCGG 4 cut(s) 54, 110, 301, 693
BsiWI CGTACG 2 cut(s) 9, 628
BslFI GGGAC 2 cut(s) 83, 706
BslI CCNNNNNNNGG 3 cut(s) 49, 295, 499
BsmAI GTCTC 3 cut(s) 119, 639, 900
BsmBI CGTCTC 1 cut(s) 900
BsmFI GGGAC 2 cut(s) 83, 706
BsnI GGCC 3 cut(s) 42, 53, 1030
Bso31I GGTCTC 2 cut(s) 119, 639
Bsp13I TCCGGA 1 cut(s) 300
Bsp143I GATC 1 cut(s) 390
BspACI CCGC 7 cut(s) 39, 85, 141, 145, 766, 909, 1045
BspANI GGCC 3 cut(s) 42, 53, 1030
BspCNI CTCAG 1 cut(s) 394
BspEI TCCGGA 1 cut(s) 300
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 3 cut(s) 176, 965, 1029
BspMAI CTGCAG 1 cut(s) 1005
BspPI GGATC 1 cut(s) 398
BspQI GCTCTTC 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 119, 639
BsrBI CCGCTC 1 cut(s) 85
BsrDI GCAATG 3 cut(s) 62, 276, 329
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 3 cut(s) 178, 796, 823
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 235, 638
BssMI GATC 1 cut(s) 390
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 638
Bst2UI CCWGG 3 cut(s) 44, 80, 848
Bst4CI ACNGT 4 cut(s) 475, 633, 844, 989
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 13
BstC8I GCNNGC 4 cut(s) 55, 145, 698, 797
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 935, 939
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 1 cut(s) 393
BstMAI GTCTC 3 cut(s) 119, 639, 900
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 4 cut(s) 59, 749, 915, 1044
BstNI CCWGG 3 cut(s) 44, 80, 848
BstNSI RCATGY 2 cut(s) 799, 869
BstSCI CCNGG 4 cut(s) 42, 78, 109, 846
BstSFI CTRYAG 1 cut(s) 1001
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 8 cut(s) 9, 493, 685, 739, 761, 987, 1015, 1034
BstV2I GAAGAC 1 cut(s) 1055
BsuI GTATCC 1 cut(s) 799
BsuRI GGCC 3 cut(s) 42, 53, 1030
BtgZI GCGATG 1 cut(s) 269
BtsCI GGATG 2 cut(s) 935, 939
BtsI GCAGTG 2 cut(s) 229, 598
BtsIMutI CAGTG 6 cut(s) 229, 509, 598, 789, 816, 900
Cac8I GCNNGC 4 cut(s) 55, 145, 698, 797
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 5 cut(s) 239, 298, 605, 844, 1028
Csp6I GTAC 4 cut(s) 10, 28, 629, 645
CviAII CATG 6 cut(s) 58, 337, 386, 547, 796, 866
CviQI GTAC 4 cut(s) 10, 28, 629, 645
DdeI CTNAG 1 cut(s) 381
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
DraIII CACNNNGTG 1 cut(s) 458
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 638
Eco31I GGTCTC 2 cut(s) 119, 639
Eco32I GATATC 1 cut(s) 374
Eco47I GGWCC 4 cut(s) 239, 298, 605, 844
Eco57I CTGAAG 1 cut(s) 1016
EcoO109I RGGNCCY 1 cut(s) 605
EcoRII CCWGG 3 cut(s) 42, 78, 846
EcoRV GATATC 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 638
EcoT22I ATGCAT 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 638
Esp3I CGTCTC 1 cut(s) 900
FaeI CATG 6 cut(s) 61, 340, 389, 550, 799, 869
FaqI GGGAC 2 cut(s) 83, 706
FatI CATG 6 cut(s) 57, 336, 385, 546, 795, 865
FauI CCCGC 2 cut(s) 148, 152
FauNDI CATATG 2 cut(s) 726, 801
FblI GTMKAC 1 cut(s) 93
FokI GGATG 2 cut(s) 942, 946
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 21
GsuI CTGGAG 3 cut(s) 62, 161, 573
HaeIII GGCC 3 cut(s) 42, 53, 1030
HapII CCGG 4 cut(s) 54, 110, 301, 693
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 6 cut(s) 61, 340, 389, 550, 799, 869
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 2 cut(s) 712, 890
HpaII CCGG 4 cut(s) 54, 110, 301, 693
HphI GGTGA 3 cut(s) 109, 674, 836
Hpy166II GTNNAC 2 cut(s) 16, 94
Hpy188I TCNGA 4 cut(s) 187, 958, 984, 996
Hpy188III TCNNGA 3 cut(s) 301, 429, 571
Hpy8I GTNNAC 2 cut(s) 16, 94
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 5 cut(s) 209, 362, 387, 441, 538
HpyCH4III ACNGT 4 cut(s) 475, 633, 844, 989
HpyCH4IV ACGT 4 cut(s) 12, 96, 168, 330
HpyCH4V TGCA 8 cut(s) 322, 509, 700, 730, 799, 1003, 1038, 1050
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 749, 915, 1044
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 4 cut(s) 12, 96, 168, 330
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 6 cut(s) 61, 340, 389, 550, 799, 869
HspAI GCGC 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 300
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 390
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 4 cut(s) 82, 180, 359, 969
Lsp1109I GCAGC 8 cut(s) 9, 493, 685, 739, 761, 987, 1015, 1034
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 429
MaeII ACGT 4 cut(s) 12, 96, 168, 330
MaeIII GTNAC 4 cut(s) 309, 326, 450, 478
MalI GATC 1 cut(s) 392
MbiI CCGCTC 1 cut(s) 85
MboI GATC 1 cut(s) 390
MboII GAAGA 3 cut(s) 214, 848, 1055
MfeI CAATTG 2 cut(s) 648, 1007
MluCI AATT 6 cut(s) 317, 619, 648, 782, 829, 1007
MmeI TCCRAC 3 cut(s) 210, 266, 448
Mph1103I ATGCAT 1 cut(s) 801
MroI TCCGGA 1 cut(s) 300
MroNI GCCGGC 1 cut(s) 53
MseI TTAA 2 cut(s) 618, 669
MslI CAYNNNNRTG 2 cut(s) 794, 800
MspA1I CMGCKG 2 cut(s) 752, 1047
MspI CCGG 4 cut(s) 54, 110, 301, 693
MspR9I CCNGG 4 cut(s) 44, 80, 111, 848
MunI CAATTG 2 cut(s) 648, 1007
MvaI CCWGG 3 cut(s) 44, 80, 848
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 4 cut(s) 59, 749, 915, 1044
NaeI GCCGGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 111
NdeI CATATG 2 cut(s) 726, 801
NdeII GATC 1 cut(s) 390
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 6 cut(s) 61, 340, 389, 550, 799, 869
NlaIV GGNNCC 3 cut(s) 176, 965, 1029
NmeAIII GCCGAG 1 cut(s) 260
NmuCI GTSAC 1 cut(s) 450
NsiI ATGCAT 1 cut(s) 801
NspI RCATGY 2 cut(s) 799, 869
PaeI GCATGC 1 cut(s) 799
PciI ACATGT 1 cut(s) 865
PciSI GCTCTTC 1 cut(s) 227
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 712, 890
Pfl23II CGTACG 2 cut(s) 9, 628
PfoI TCCNGGA 2 cut(s) 78, 846
Ppu21I YACGTR 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 605
PscI ACATGT 1 cut(s) 865
Psp5II RGGWCCY 1 cut(s) 605
Psp6I CCWGG 3 cut(s) 42, 78, 846
PspGI CCWGG 3 cut(s) 42, 78, 846
PspLI CGTACG 2 cut(s) 9, 628
PspN4I GGNNCC 3 cut(s) 176, 965, 1029
PspPI GGNCC 5 cut(s) 239, 298, 605, 844, 1028
PspPPI RGGWCCY 1 cut(s) 605
PsrI GAACNNNNNNTAC 2 cut(s) 463, 495
PstI CTGCAG 1 cut(s) 1005
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 4 cut(s) 11, 29, 630, 646
RsaNI GTAC 4 cut(s) 10, 28, 629, 645
RseI CAYNNNNRTG 2 cut(s) 794, 800
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 2 cut(s) 618, 669
Sau3AI GATC 1 cut(s) 390
Sau96I GGNCC 5 cut(s) 239, 298, 605, 844, 1028
ScrFI CCNGG 4 cut(s) 44, 80, 111, 848
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 1001
SinI GGWCC 4 cut(s) 239, 298, 605, 844
SmiMI CAYNNNNRTG 2 cut(s) 794, 800
SphI GCATGC 1 cut(s) 799
Sse9I AATT 6 cut(s) 317, 619, 648, 782, 829, 1007
SsiI CCGC 7 cut(s) 39, 85, 141, 145, 766, 909, 1045
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 4 cut(s) 42, 78, 109, 846
StyI CCWWGG 1 cut(s) 638
TaaI ACNGT 4 cut(s) 475, 633, 844, 989
TaiI ACGT 4 cut(s) 15, 99, 171, 333
TaqI TCGA 2 cut(s) 291, 349
TasI AATT 6 cut(s) 317, 619, 648, 782, 829, 1007
TatI WGTACW 1 cut(s) 644
TauI GCSGC 2 cut(s) 42, 88
TfiI GAWTC 2 cut(s) 712, 890
Tru1I TTAA 2 cut(s) 618, 669
Tru9I TTAA 2 cut(s) 618, 669
TscAI CASTG 6 cut(s) 236, 516, 598, 796, 823, 907
TseFI GTSAC 1 cut(s) 450
TseI GCWGC 8 cut(s) 22, 506, 673, 749, 752, 1000, 1003, 1047
Tsp45I GTSAC 1 cut(s) 450
TspDTI ATGAA 4 cut(s) 202, 325, 333, 903
TspGWI ACGGA 1 cut(s) 708
TspRI CASTG 6 cut(s) 236, 516, 598, 796, 823, 907
VpaK11BI GGWCC 4 cut(s) 239, 298, 605, 844
XapI RAATTY 1 cut(s) 782
XbaI TCTAGA 1 cut(s) 428
XceI RCATGY 2 cut(s) 799, 869
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 1 cut(s) 429
ZraI GACGTC 1 cut(s) 169
Zsp2I ATGCAT 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.