Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013368

Physical Location & Seq

Genomic Coordinates Reverse (-)

6985298 .. 6986037

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATGCACATGACCTTCTACTGGGGAATCAAAGCCACAATTCTCTTCGATTTCTGGAAAACTGACTCATGGCTTAGTTACATCCTCACTTTAATCGCTTGCTTCGTCTTCTCCGCTTTCTATCAATACCTCGAGAATCGCCGCATCCAATTCAAATCCCTTTCTTCCTCCCGTCGTGCTCCTCCACCGCCTCGCTCTTCCTCCGGCGTCTCCGCGCCTCTTATCCCTAAATCCGGTACCAGATCCGCCGCTAAAGCTGCTTCGGTTCTTCTTTTCGGCGTCAACGCAGCGATCGGTTACTTGCTGATGCTTGCAGCTATGTCTTTCAACGGAGGTGTTTTCATCGCGATTGTCGTCGGATTAACCGCCGGATACGCTGTTTTTAGATCTGATGACGGCGGTGCTGATACCGCCACGGATGATCCATGTCCATGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0012505 GO:0015680 GO:0016020 GO:0030001 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097305 GO:0097708 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

146

Amino Acids

15.78

Weight (kDa)

9.12

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	4 - 128	7.2e-26	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20650
fragaria_vesca	FvH4_2g30830
malus_domestica	MD08G1044900.v1.1 MD08G1045600.v1.1 MD15G1048000.v1.1
prunus_persica	Prupe.1G402400_v2.0.a1
pyrus_communis	pycom07g27270
rosa_chinensis	RchiOBHm_Chr6g0312031
rosa_laevigata	RLG00000010359
rosa_multiflora	Rmu_co8125252.1_g000001 Rmu_sc0005381.1_g000009
rosa_roxburghii	Rroxscaffold_7G00157130
rosa_rugosa	Rorug06G0392400
rosa_samantha	Rh6AG508800 Rh6BG520100 Rh6CG526000 Rh6DG511500
rosa_wichuraiana	Rw6G044310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	2 cut(s)	215, 347
AciI	CCGC	9 cut(s)	114, 142, 188, 213, 246, 249, 366, 399, 411
AclWI	GGATC	2 cut(s)	237, 416
AcyI	GRCGYC	2 cut(s)	207, 279
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	21, 233
AgsI	TTSAA	2 cut(s)	154, 328
AluBI	AGCT	2 cut(s)	257, 317
AluI	AGCT	2 cut(s)	257, 317
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	237, 416
Ama87I	CYCGRG	1 cut(s)	131
ApeKI	GCWGC	3 cut(s)	257, 287, 314
Asp718I	GGTACC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	3 cut(s)	244, 299, 326
BceAI	ACGGC	1 cut(s)	412
BciVI	GTATCC	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	5 cut(s)	142, 249, 258, 288, 315
BlsI	GCNGC	5 cut(s)	143, 250, 259, 289, 316
BmeT110I	CYCGRG	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	153, 297
BmuI	ACTGGG	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	100
BsaHI	GRCGYC	2 cut(s)	207, 279
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 233
Bse1I	ACTGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	3 cut(s)	81, 144, 424
BseLI	CCNNNNNNNGG	2 cut(s)	21, 233
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	3 cut(s)	244, 299, 326
Bsh1236I	CGCG	2 cut(s)	215, 347
Bsh1285I	CGRYCG	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	3 cut(s)	204, 234, 369
BslI	CCNNNNNNNGG	2 cut(s)	21, 233
BsmAI	GTCTC	1 cut(s)	214
BsmBI	CGTCTC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	4 cut(s)	242, 291, 386, 421
Bsp68I	TCGCGA	1 cut(s)	347
BspACI	CCGC	9 cut(s)	114, 142, 188, 213, 246, 249, 366, 399, 411
BspFNI	CGCG	2 cut(s)	215, 347
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	237, 416
BspQI	GCTCTTC	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	4 cut(s)	242, 291, 386, 421
BssNI	GRCGYC	2 cut(s)	207, 279
Bst6I	CTCTTC	2 cut(s)	50, 202
BstACI	GRCGYC	2 cut(s)	207, 279
BstC8I	GCNNGC	2 cut(s)	100, 312
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	3 cut(s)	81, 144, 424
BstFNI	CGCG	2 cut(s)	215, 347
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	4 cut(s)	245, 294, 389, 424
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	4 cut(s)	242, 291, 386, 421
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 257, 374, 410
BstUI	CGCG	2 cut(s)	215, 347
BstV1I	GCAGC	3 cut(s)	244, 299, 326
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	2 cut(s)	242, 386
BstYI	RGATCY	2 cut(s)	242, 386
BsuI	GTATCC	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	3 cut(s)	81, 144, 424
BtuMI	TCGCGA	1 cut(s)	347
Cac8I	GCNNGC	2 cut(s)	100, 312
CfoI	GCGC	1 cut(s)	217
CseI	GACGC	2 cut(s)	196, 268
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	4 cut(s)	10, 69, 426, 432
CviJI	RGCY	4 cut(s)	35, 73, 257, 317
CviKI_1	RGCY	4 cut(s)	35, 73, 257, 317
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	4 cut(s)	244, 293, 388, 423
DpnII	GATC	4 cut(s)	242, 291, 386, 421
Eam1104I	CTCTTC	2 cut(s)	50, 202
EarI	CTCTTC	2 cut(s)	50, 202
EciI	GGCGGA	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	4 cut(s)	13, 72, 429, 435
FaiI	YATR	5 cut(s)	11, 70, 320, 427, 433
FatI	CATG	4 cut(s)	9, 68, 425, 431
Fnu4HI	GCNGC	5 cut(s)	142, 249, 258, 288, 315
FokI	GGATG	3 cut(s)	68, 131, 431
Fsp4HI	GCNGC	5 cut(s)	142, 249, 258, 288, 315
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	5 cut(s)	142, 249, 258, 288, 315
HapII	CCGG	3 cut(s)	204, 234, 369
HgaI	GACGC	2 cut(s)	196, 268
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	2 cut(s)	207, 279
Hin1II	CATG	4 cut(s)	13, 72, 429, 435
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	3 cut(s)	27, 65, 136
HpaII	CCGG	3 cut(s)	204, 234, 369
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	359, 391
Hpy188III	TCNNGA	3 cut(s)	55, 133, 346
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	2 cut(s)	177, 359
HpyAV	CCTTC	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	7, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 257, 374, 410
HpyF3I	CTNAG	1 cut(s)	74
Hsp92I	GRCGYC	2 cut(s)	207, 279
Hsp92II	CATG	4 cut(s)	13, 72, 429, 435
HspAI	GCGC	1 cut(s)	215
KpnI	GGTACC	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	242, 291, 386, 421
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	6 cut(s)	7, 40, 217, 247, 253, 382
Lsp1109I	GCAGC	3 cut(s)	244, 299, 326
LweI	GCATC	2 cut(s)	153, 297
MaeIII	GTNAC	2 cut(s)	77, 296
MalI	GATC	4 cut(s)	244, 293, 388, 423
MboI	GATC	4 cut(s)	242, 291, 386, 421
MboII	GAAGA	5 cut(s)	37, 100, 156, 189, 260
MflI	RGATCY	2 cut(s)	242, 386
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	2 cut(s)	39, 149
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	8 cut(s)	95, 140, 178, 192, 201, 211, 228, 326
MseI	TTAA	2 cut(s)	92, 362
MslI	CAYNNNNRTG	1 cut(s)	430
MspI	CCGG	3 cut(s)	204, 234, 369
MvnI	CGCG	2 cut(s)	215, 347
MwoI	GCNNNNNNNGC	4 cut(s)	254, 257, 374, 410
NdeII	GATC	4 cut(s)	242, 291, 386, 421
NlaIII	CATG	4 cut(s)	13, 72, 429, 435
NlaIV	GGNNCC	1 cut(s)	238
NruI	TCGCGA	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 351
PfeI	GAWTC	2 cut(s)	27, 136
PkrI	GCNGC	5 cut(s)	143, 250, 259, 289, 316
Ple19I	CGATCG	1 cut(s)	294
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	242, 386
PvuI	CGATCG	1 cut(s)	294
RruI	TCGCGA	1 cut(s)	347
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	430
SapI	GCTCTTC	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	92, 362
SatI	GCNGC	5 cut(s)	142, 249, 258, 288, 315
Sau3AI	GATC	4 cut(s)	242, 291, 386, 421
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	5 cut(s)	17, 132, 259, 319, 337
SfaNI	GCATC	2 cut(s)	153, 297
Sfr274I	CTCGAG	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	39, 149
SsiI	CCGC	9 cut(s)	114, 142, 188, 213, 246, 249, 366, 399, 411
TaqI	TCGA	2 cut(s)	48, 132
TasI	AATT	2 cut(s)	39, 149
TauI	GCSGC	2 cut(s)	144, 251
TfiI	GAWTC	2 cut(s)	27, 136
Tru1I	TTAA	2 cut(s)	92, 362
Tru9I	TTAA	2 cut(s)	92, 362
TseI	GCWGC	3 cut(s)	257, 287, 314
TspDTI	ATGAA	1 cut(s)	331
TspGWI	ACGGA	2 cut(s)	345, 431
XhoI	CTCGAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.