Prupe.1G402400_v2.0.a1

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013368
Physical Location & Seq
Forward (+)
35487174 .. 35487992
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G402400.1

Sequence Viewer

Length: 450 bp
ATGATGCACATGACCTTCTACTGGAGCAAGGACGTGACAATCCTGATCGACTCTTGGCGGACCACTTCATGGACGAGTTACTCCCTCACGCTAATCGCCTGCCTCATCGTCTCGGCCTTCTACCAGTACCTCGAGGACCTCCGCGTGCGGCTCAAGACCGCGTCGTCGTCGGCCGCGAAAATCTCTTCGCCGGCGCCGATCCAAACTCCGCTGCTCGGCGCGAAGCTCGACGGCGCCGGAGGGAGGTTCTCGGCGGCTCGGCTTGGTGGAGCCGTGCTTTTCGGGGTGAACGCGGCGATCGGGTACCTGCTGATGCTGGCGGTCATGTCGTTTAACGGAGGCGTGTTTGTGGCTATCGTTGTGGGGCTCGCGATTGGCTACTTGGCGTTTAGGAGCGGGGACGATGACGTGGCGGCAACTGTGGTTGATAATCCCTGCGCTTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

150

Amino Acids

15.77

Weight (kDa)

7.69

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20650
fragaria_vesca FvH4_2g30830
malus_domestica MD08G1044900.v1.1 MD08G1045600.v1.1 MD15G1048000.v1.1
prunus_persica Prupe.1G402400_v2.0.a1
pyrus_communis pycom07g27270
rosa_chinensis RchiOBHm_Chr6g0312031
rosa_laevigata RLG00000010359
rosa_multiflora Rmu_co8125252.1_g000001 Rmu_sc0005381.1_g000009
rosa_roxburghii Rroxscaffold_7G00157130
rosa_rugosa Rorug06G0392400
rosa_samantha Rh6AG508800 Rh6BG520100 Rh6CG526000 Rh6DG511500
rosa_wichuraiana Rw6G044310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 163
AbsI CCTCGAGG 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 315
Acc65I GGTACC 1 cut(s) 303
AccB1I GGYRCC 3 cut(s) 193, 233, 303
AccB7I CCANNNNNTGG 1 cut(s) 69
AccBSI CCGCTC 1 cut(s) 396
AccII CGCG 6 cut(s) 144, 161, 176, 221, 293, 371
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 171
AcyI GRCGYC 2 cut(s) 194, 234
AfaI GTAC 2 cut(s) 128, 305
AfiI CCNNNNNNNGG 4 cut(s) 21, 69, 215, 243
AjiI CACGTC 2 cut(s) 34, 409
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 114, 171
ApeKI GCWGC 1 cut(s) 211
Asp718I GGTACC 1 cut(s) 303
AspLEI GCGC 4 cut(s) 196, 221, 236, 440
AspS9I GGNCC 2 cut(s) 60, 136
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 2 cut(s) 60, 136
BanI GGYRCC 3 cut(s) 193, 233, 303
BanII GRGCYC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 198
BceAI ACGGC 2 cut(s) 247, 257
BcoDI GTCTC 1 cut(s) 115
BfoI RGCGCY 2 cut(s) 197, 237
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 6 cut(s) 149, 174, 212, 255, 294, 414
BlsI GCNGC 6 cut(s) 150, 175, 213, 256, 295, 415
Bme18I GGWCC 2 cut(s) 60, 136
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 2 cut(s) 34, 409
BmgT120I GGNCC 2 cut(s) 60, 136
BmiI GGNNCC 4 cut(s) 195, 235, 271, 305
BmsI GCATC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 137
BsaHI GRCGYC 2 cut(s) 194, 234
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 69, 215, 243
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 26, 124
BseLI CCNNNNNNNGG 4 cut(s) 21, 69, 215, 243
BseNI ACTGG 2 cut(s) 26, 124
BseX3I CGGCCG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 198
Bsh1236I CGCG 6 cut(s) 144, 161, 176, 221, 293, 371
Bsh1285I CGRYCG 2 cut(s) 174, 300
BshFI GGCC 2 cut(s) 116, 173
BshNI GGYRCC 3 cut(s) 193, 233, 303
BsiEI CGRYCG 2 cut(s) 174, 300
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 2 cut(s) 191, 237
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 4 cut(s) 21, 69, 215, 243
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 2 cut(s) 116, 173
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 3 cut(s) 45, 198, 297
Bsp68I TCGCGA 1 cut(s) 371
BspANI GGCC 2 cut(s) 116, 173
BspFNI CGCG 6 cut(s) 144, 161, 176, 221, 293, 371
BspLI GGNNCC 4 cut(s) 195, 235, 271, 305
BspMI ACCTGC 1 cut(s) 315
BspPI GGATC 1 cut(s) 193
BspT107I GGYRCC 3 cut(s) 193, 233, 303
BsrBI CCGCTC 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 190
BsrI ACTGG 2 cut(s) 26, 124
BssAI RCCGGY 1 cut(s) 190
BssMI GATC 3 cut(s) 45, 198, 297
BssNI GRCGYC 2 cut(s) 194, 234
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 190
BstACI GRCGYC 2 cut(s) 194, 234
BstC8I GCNNGC 5 cut(s) 100, 146, 192, 318, 369
BstDEI CTNAG 1 cut(s) 447
BstFNI CGCG 6 cut(s) 144, 161, 176, 221, 293, 371
BstH2I RGCGCY 2 cut(s) 197, 237
BstHHI GCGC 4 cut(s) 196, 221, 236, 440
BstKTI GATC 3 cut(s) 48, 201, 300
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 3 cut(s) 45, 198, 297
BstMCI CGRYCG 2 cut(s) 174, 300
BstUI CGCG 6 cut(s) 144, 161, 176, 221, 293, 371
BstV1I GCAGC 1 cut(s) 198
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 116, 173
BtrI CACGTC 2 cut(s) 34, 409
BtuMI TCGCGA 1 cut(s) 371
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 5 cut(s) 100, 146, 192, 318, 369
CfoI GCGC 4 cut(s) 196, 221, 236, 440
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 60, 136
CseI GACGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 127, 304
CviAII CATG 3 cut(s) 10, 69, 325
CviQI GTAC 2 cut(s) 127, 304
DdeI CTNAG 1 cut(s) 447
DinI GGCGCC 2 cut(s) 195, 235
DpnI GATC 3 cut(s) 47, 200, 299
DpnII GATC 3 cut(s) 45, 198, 297
DrdI GACNNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 171
EagI CGGCCG 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
EciI GGCGGA 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 60, 136
Eco52I CGGCCG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 369
EgeI GGCGCC 2 cut(s) 195, 235
EheI GGCGCC 2 cut(s) 195, 235
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 3 cut(s) 13, 72, 328
FaiI YATR 3 cut(s) 11, 70, 326
FaqI GGGAC 1 cut(s) 413
FatI CATG 3 cut(s) 9, 68, 324
FauI CCCGC 1 cut(s) 389
Fnu4HI GCNGC 6 cut(s) 149, 174, 212, 255, 294, 414
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 6 cut(s) 149, 174, 212, 255, 294, 414
GlaI GCGC 4 cut(s) 195, 220, 235, 439
GluI GCNGC 6 cut(s) 149, 174, 212, 255, 294, 414
GsuI CTGGAG 1 cut(s) 43
HaeII RGCGCY 2 cut(s) 197, 237
HaeIII GGCC 2 cut(s) 116, 173
HapII CCGG 2 cut(s) 191, 237
HgaI GACGC 1 cut(s) 150
HhaI GCGC 4 cut(s) 196, 221, 236, 440
Hin1I GRCGYC 2 cut(s) 194, 234
Hin1II CATG 3 cut(s) 13, 72, 328
Hin6I GCGC 4 cut(s) 194, 219, 234, 438
HinP1I GCGC 4 cut(s) 194, 219, 234, 438
HinfI GANTC 1 cut(s) 50
HpaII CCGG 2 cut(s) 191, 237
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 289
Hpy188III TCNNGA 3 cut(s) 43, 154, 370
Hpy8I GTNNAC 1 cut(s) 289
Hpy99I CGWCG 4 cut(s) 166, 169, 172, 233
HpyAV CCTTC 2 cut(s) 25, 127
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 2 cut(s) 33, 408
HpyCH4V TGCA 1 cut(s) 7
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 2 cut(s) 33, 408
Hsp92I GRCGYC 2 cut(s) 194, 234
Hsp92II CATG 3 cut(s) 13, 72, 328
HspAI GCGC 4 cut(s) 194, 219, 234, 438
KasI GGCGCC 2 cut(s) 193, 233
KpnI GGTACC 1 cut(s) 307
KroI GCCGGC 1 cut(s) 190
KroNI GCCGGC 1 cut(s) 192
Kzo9I GATC 3 cut(s) 45, 198, 297
LmnI GCTCC 3 cut(s) 24, 269, 393
LpnPI CCDG 8 cut(s) 7, 56, 112, 137, 204, 250, 302, 320
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 1 cut(s) 303
MaeII ACGT 2 cut(s) 33, 408
MaeIII GTNAC 2 cut(s) 34, 77
MalI GATC 3 cut(s) 47, 200, 299
MbiI CCGCTC 1 cut(s) 396
MboI GATC 3 cut(s) 45, 198, 297
MboII GAAGA 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 369
Mly113I GGCGCC 2 cut(s) 194, 234
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 8 cut(s) 95, 113, 127, 140, 149, 233, 237, 332
MreI CGCCGGCG 1 cut(s) 190
MroNI GCCGGC 1 cut(s) 190
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 2 cut(s) 191, 237
MvnI CGCG 6 cut(s) 144, 161, 176, 221, 293, 371
NaeI GCCGGC 1 cut(s) 192
NarI GGCGCC 2 cut(s) 194, 234
NdeII GATC 3 cut(s) 45, 198, 297
NgoMIV GCCGGC 1 cut(s) 190
NlaIII CATG 3 cut(s) 13, 72, 328
NlaIV GGNNCC 4 cut(s) 195, 235, 271, 305
NmeAIII GCCGAG 4 cut(s) 92, 195, 230, 238
NmuCI GTSAC 1 cut(s) 34
NruI TCGCGA 1 cut(s) 371
PaeR7I CTCGAG 1 cut(s) 131
PcsI WCGNNNNNNNCGW 2 cut(s) 173, 194
PdiI GCCGGC 1 cut(s) 192
PflFI GACNNNGTC 1 cut(s) 160
PflMI CCANNNNNTGG 1 cut(s) 69
PkrI GCNGC 6 cut(s) 150, 175, 213, 256, 295, 415
Ple19I CGATCG 1 cut(s) 300
PleI GAGTC 1 cut(s) 44
PluTI GGCGCC 2 cut(s) 197, 237
PpsI GAGTC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
PspN4I GGNNCC 4 cut(s) 195, 235, 271, 305
PspPI GGNCC 2 cut(s) 60, 136
PspPPI RGGWCCY 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 131
PsyI GACNNNGTC 1 cut(s) 160
PvuI CGATCG 1 cut(s) 300
RruI TCGCGA 1 cut(s) 371
RsaI GTAC 2 cut(s) 128, 305
RsaNI GTAC 2 cut(s) 127, 304
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 6 cut(s) 149, 174, 212, 255, 294, 414
Sau3AI GATC 3 cut(s) 45, 198, 297
Sau96I GGNCC 2 cut(s) 60, 136
SchI GAGTC 1 cut(s) 44
SduI GDGCHC 1 cut(s) 369
SetI ASST 8 cut(s) 17, 36, 132, 141, 228, 248, 309, 411
SfaNI GCATC 1 cut(s) 303
SfoI GGCGCC 2 cut(s) 195, 235
Sfr274I CTCGAG 1 cut(s) 131
SgrAI CRCCGGYG 1 cut(s) 190
SinI GGWCC 2 cut(s) 60, 136
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 131, 152
SmoI CTYRAG 2 cut(s) 131, 152
SspDI GGCGCC 2 cut(s) 193, 233
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 2 cut(s) 36, 411
TaqI TCGA 3 cut(s) 48, 132, 228
TauI GCSGC 5 cut(s) 151, 176, 257, 296, 416
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 351
Tth111I GACNNNGTC 1 cut(s) 160
Van91I CCANNNNNTGG 1 cut(s) 69
VpaK11BI GGWCC 2 cut(s) 60, 136
XhoI CTCGAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.