Rroxscaffold_7G00157130

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013368
Physical Location & Seq
Forward (+)
941732 .. 942175
444 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00157130.1

Sequence Viewer

Length: 444 bp
ATGATGCACATGACGTTCTACTGGAGCAAGCAGGTGACGCTCCTGTTCGACTCGTGGAGCACCACCACGTGGCTTGGCTACGCCCTCACGCTCCTCGCTTGCCTCATCGTCCCGGCGTTCTACCAGTACCTCGAGGACCTCCGCATGCGCCTCAGGCTCGCGTCTTCGGCCGGGAAGGCGGCGGCGGCGTCCGATCCGATCGAGACTCCGCTTCTGCGAGCCAAGCTCGCCGGAGGAGGGAAGTTCTCTGTGGTTAAGTTGGCCGGAGCCGTGATCTTCGCCGTGAATTCTGCGATCGGGTACATGCTGATGCTGGCGGTGATGTCGTACAACGGCGGCGTTTTCGTGGCGATCGTTTTGGGGTTGGCGATTGGGTATTTGTTTTTCAGGAGTGGAGATGAGGAAGTTTCGGCTGCGGTTGAAAATCCCTGTGCTTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

147

Amino Acids

15.82

Weight (kDa)

7.68

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 4 - 129 3.8e-22 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20650
fragaria_vesca FvH4_2g30830
malus_domestica MD08G1044900.v1.1 MD08G1045600.v1.1 MD15G1048000.v1.1
prunus_persica Prupe.1G402400_v2.0.a1
pyrus_communis pycom07g27270
rosa_chinensis RchiOBHm_Chr6g0312031
rosa_laevigata RLG00000010359
rosa_multiflora Rmu_co8125252.1_g000001 Rmu_sc0005381.1_g000009
rosa_roxburghii Rroxscaffold_7G00157130
rosa_rugosa Rorug06G0392400
rosa_samantha Rh6AG508800 Rh6BG520100 Rh6CG526000 Rh6DG511500
rosa_wichuraiana Rw6G044310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
AbsI CCTCGAGG 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 69
AccII CGCG 1 cut(s) 161
AciI CCGC 8 cut(s) 142, 179, 182, 185, 209, 317, 336, 416
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 2 cut(s) 168, 261
AcsI RAATTY 1 cut(s) 286
AcvI CACGTG 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 188
AdeI CACNNNGTG 1 cut(s) 69
AfaI GTAC 3 cut(s) 128, 302, 329
AfiI CCNNNNNNNGG 2 cut(s) 69, 237
AgsI TTSAA 1 cut(s) 422
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 168, 261
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 1 cut(s) 286
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 2 cut(s) 113, 172
AsuHPI GGTGA 2 cut(s) 46, 331
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 152
BauI CACGAG 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 400
BceAI ACGGC 3 cut(s) 254, 266, 349
BcnI CCSGG 2 cut(s) 113, 172
BcoDI GTCTC 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 22
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 5 cut(s) 180, 183, 186, 337, 414
BlsI GCNGC 5 cut(s) 181, 184, 187, 338, 415
Bme1390I CCNGG 2 cut(s) 113, 172
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 113, 172
BmsI GCATC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpmI CTGGAG 1 cut(s) 43
BpuMI CCSGG 2 cut(s) 113, 172
BsaAI YACGTR 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 237
Bse1I ACTGG 2 cut(s) 26, 124
Bse21I CCTNAGG 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 69, 237
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 2 cut(s) 26, 124
BseRI GAGGAG 2 cut(s) 83, 249
BseX3I CGGCCG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 161
Bsh1285I CGRYCG 4 cut(s) 171, 201, 297, 354
BshFI GGCC 2 cut(s) 170, 263
BsiEI CGRYCG 4 cut(s) 171, 201, 297, 354
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 4 cut(s) 113, 171, 231, 264
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 69, 237
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 2 cut(s) 170, 263
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 5 cut(s) 193, 198, 273, 294, 351
BspACI CCGC 8 cut(s) 142, 179, 182, 185, 209, 317, 336, 416
BspANI GGCC 2 cut(s) 170, 263
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 188
BsrI ACTGG 2 cut(s) 26, 124
BssMI GATC 5 cut(s) 193, 198, 273, 294, 351
BssNI GRCGYC 1 cut(s) 188
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 7 cut(s) 29, 100, 146, 159, 219, 228, 315
BstDEI CTNAG 2 cut(s) 152, 441
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 5 cut(s) 196, 201, 276, 297, 354
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 5 cut(s) 193, 198, 273, 294, 351
BstMCI CGRYCG 4 cut(s) 171, 201, 297, 354
BstMWI GCNNNNNNNGC 7 cut(s) 37, 154, 167, 176, 185, 223, 227
BstNSI RCATGY 2 cut(s) 148, 307
BstSCI CCNGG 2 cut(s) 111, 170
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 400
BstV2I GAAGAC 1 cut(s) 156
BstZI CGGCCG 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 152
BsuRI GGCC 2 cut(s) 170, 263
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 7 cut(s) 29, 100, 146, 159, 219, 228, 315
CfoI GCGC 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 3 cut(s) 46, 150, 177
Csp6I GTAC 3 cut(s) 127, 301, 328
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 3 cut(s) 10, 145, 304
CviJI RGCY 9 cut(s) 73, 78, 157, 170, 221, 226, 263, 269, 413
CviKI_1 RGCY 9 cut(s) 73, 78, 157, 170, 221, 226, 263, 269, 413
CviQI GTAC 3 cut(s) 127, 301, 328
DdeI CTNAG 2 cut(s) 152, 441
DpnI GATC 5 cut(s) 195, 200, 275, 296, 353
DpnII GATC 5 cut(s) 193, 198, 273, 294, 351
DraIII CACNNNGTG 1 cut(s) 69
EaeI YGGCCR 2 cut(s) 168, 261
EagI CGGCCG 1 cut(s) 168
EclXI CGGCCG 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 136
Eco52I CGGCCG 1 cut(s) 168
Eco72I CACGTG 1 cut(s) 69
Eco81I CCTNAGG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 286
FaeI CATG 3 cut(s) 13, 148, 307
FaiI YATR 3 cut(s) 11, 146, 305
FaqI GGGAC 1 cut(s) 95
FatI CATG 3 cut(s) 9, 144, 303
Fnu4HI GCNGC 5 cut(s) 180, 183, 186, 337, 414
Fsp4HI GCNGC 5 cut(s) 180, 183, 186, 337, 414
GlaI GCGC 1 cut(s) 149
GluI GCNGC 5 cut(s) 180, 183, 186, 337, 414
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 2 cut(s) 170, 263
HapII CCGG 4 cut(s) 113, 171, 231, 264
HgaI GACGC 3 cut(s) 46, 150, 177
HhaI GCGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 3 cut(s) 13, 148, 307
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 2 cut(s) 50, 205
HpaII CCGG 4 cut(s) 113, 171, 231, 264
HphI GGTGA 2 cut(s) 46, 331
Hpy188I TCNGA 2 cut(s) 193, 198
Hpy188III TCNNGA 2 cut(s) 202, 388
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 14, 68
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 154, 167, 176, 185, 223, 227
HpyF3I CTNAG 2 cut(s) 152, 441
HpySE526I ACGT 2 cut(s) 14, 68
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 3 cut(s) 13, 148, 307
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 5 cut(s) 193, 198, 273, 294, 351
LmnI GCTCC 5 cut(s) 24, 45, 57, 96, 266
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 1 cut(s) 300
MaeII ACGT 2 cut(s) 14, 68
MaeIII GTNAC 1 cut(s) 34
MalI GATC 5 cut(s) 195, 200, 275, 296, 353
MboI GATC 5 cut(s) 193, 198, 273, 294, 351
MboII GAAGA 2 cut(s) 156, 268
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 286
MlyI GAGTC 2 cut(s) 44, 199
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 4 cut(s) 113, 171, 231, 264
MspR9I CCNGG 2 cut(s) 113, 172
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 7 cut(s) 37, 154, 167, 176, 185, 223, 227
NciI CCSGG 2 cut(s) 113, 172
NdeII GATC 5 cut(s) 193, 198, 273, 294, 351
NlaIII CATG 3 cut(s) 13, 148, 307
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 2 cut(s) 148, 307
PaeI GCATGC 1 cut(s) 148
PaeR7I CTCGAG 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PflMI CCANNNNNTGG 1 cut(s) 69
PkrI GCNGC 5 cut(s) 181, 184, 187, 338, 415
Ple19I CGATCG 3 cut(s) 201, 297, 354
PleI GAGTC 2 cut(s) 44, 199
PmaCI CACGTG 1 cut(s) 69
PmlI CACGTG 1 cut(s) 69
PpsI GAGTC 2 cut(s) 44, 199
Ppu21I YACGTR 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
PspCI CACGTG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 131
PvuI CGATCG 3 cut(s) 201, 297, 354
RsaI GTAC 3 cut(s) 128, 302, 329
RsaNI GTAC 3 cut(s) 127, 301, 328
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 5 cut(s) 180, 183, 186, 337, 414
Sau3AI GATC 5 cut(s) 193, 198, 273, 294, 351
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 2 cut(s) 44, 199
ScrFI CCNGG 2 cut(s) 113, 172
SduI GDGCHC 1 cut(s) 62
SetI ASST 6 cut(s) 17, 36, 71, 132, 141, 228
SfaNI GCATC 1 cut(s) 300
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 136
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SphI GCATGC 1 cut(s) 148
Sse9I AATT 1 cut(s) 286
SsiI CCGC 8 cut(s) 142, 179, 182, 185, 209, 317, 336, 416
StyD4I CCNGG 2 cut(s) 111, 170
TaiI ACGT 2 cut(s) 17, 71
TaqI TCGA 3 cut(s) 48, 132, 201
TasI AATT 1 cut(s) 286
TauI GCSGC 4 cut(s) 182, 185, 188, 339
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 286
XceI RCATGY 2 cut(s) 148, 307
XhoI CTCGAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.