MD08G1044900.v1.1

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013368
Physical Location & Seq
Reverse (-)
3409203 .. 3409655
453 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1044900.v1.1.491

Sequence Viewer

Length: 453 bp
ATGATGCACATGACCTTCTACTGGAGCCGGCAGGTAACGCTCCTCTTCGACTCGTGGAAAACCGATACGTGGACCAGCTACTCCCTCACGGTGCTTGCCTGCCTCCTCGTCCCGGCCTTCTACCAGTACCTCGAGGCCCTGCGCGTGCGCATCAAGCGCGCGGCCTCCTCGTCTTCCCTGAAATCCGCGTCCGACGCGCCGATCCGTGCCCCACTGCTCGCCGCCAAGCTCGGCGGCGCCGGAGGAAGGTTCTCGGCGGGGCGGCTGGCGGAGAGCGTGCTTTTCGGAGTCAACGCGGCGATCGGGTACATGATTATGCTGGCGATCATGTCTTTTAACGGCGGAGTGTTCGTGGCCATCGTCGTGGGGCTGGCGATTGGTTATTTGGCGTTTCTGAGTGGGGACGATGACGTGGCGGGTGTGGTGGTGGATAATCCGTGTGCGTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

151

Amino Acids

15.97

Weight (kDa)

8.5

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 4 - 131 1.5e-23 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20650
fragaria_vesca FvH4_2g30830
malus_domestica MD08G1044900.v1.1 MD08G1045600.v1.1 MD15G1048000.v1.1
prunus_persica Prupe.1G402400_v2.0.a1
pyrus_communis pycom07g27270
rosa_chinensis RchiOBHm_Chr6g0312031
rosa_laevigata RLG00000010359
rosa_multiflora Rmu_co8125252.1_g000001 Rmu_sc0005381.1_g000009
rosa_roxburghii Rroxscaffold_7G00157130
rosa_rugosa Rorug06G0392400
rosa_samantha Rh6AG508800 Rh6BG520100 Rh6CG526000 Rh6DG511500
rosa_wichuraiana Rw6G044310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 131
Acc16I TGCGCA 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 236
AccII CGCG 6 cut(s) 144, 159, 161, 188, 197, 296
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 2 cut(s) 128, 308
AfiI CCNNNNNNNGG 4 cut(s) 21, 69, 112, 246
AjiI CACGTC 1 cut(s) 412
AluBI AGCT 2 cut(s) 78, 229
AluI AGCT 2 cut(s) 78, 229
AlwI GGATC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 4 cut(s) 114, 135, 162, 354
AspLEI GCGC 6 cut(s) 144, 150, 159, 161, 199, 239
AspS9I GGNCC 2 cut(s) 72, 136
AsuC2I CCSGG 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 72
BaeGI GKGCMC 1 cut(s) 211
BalI TGGCCA 1 cut(s) 356
BanI GGYRCC 1 cut(s) 236
BauI CACGAG 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 165
BccI CCATC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 355
BcnI CCSGG 1 cut(s) 113
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 5 cut(s) 162, 222, 235, 263, 297
BlsI GCNGC 5 cut(s) 163, 223, 236, 264, 298
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 72, 136
BmiI GGNNCC 2 cut(s) 26, 238
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 69, 112, 246
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 2 cut(s) 26, 124
BseLI CCNNNNNNNGG 4 cut(s) 21, 69, 112, 246
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 2 cut(s) 26, 124
BsePI GCGCGC 1 cut(s) 157
BseRI GAGGAG 3 cut(s) 32, 95, 157
BseSI GKGCMC 1 cut(s) 211
Bsh1236I CGCG 6 cut(s) 144, 159, 161, 188, 197, 296
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 4 cut(s) 116, 137, 164, 356
BshNI GGYRCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 28, 113, 240
BslFI GGGAC 2 cut(s) 95, 416
BslI CCNNNNNNNGG 4 cut(s) 21, 69, 112, 246
BsmFI GGGAC 2 cut(s) 95, 416
BsnI GGCC 4 cut(s) 116, 137, 164, 356
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 3 cut(s) 201, 300, 324
BspANI GGCC 4 cut(s) 116, 137, 164, 356
BspCNI CTCAG 1 cut(s) 387
BspFNI CGCG 6 cut(s) 144, 159, 161, 188, 197, 296
BspLI GGNNCC 2 cut(s) 26, 238
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 2 cut(s) 26, 124
BssAI RCCGGY 1 cut(s) 27
BssHII GCGCGC 1 cut(s) 157
BssMI GATC 3 cut(s) 201, 300, 324
BssNI GRCGYC 1 cut(s) 237
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 395, 450
BstFNI CGCG 6 cut(s) 144, 159, 161, 188, 197, 296
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 6 cut(s) 144, 150, 159, 161, 199, 239
BstKTI GATC 3 cut(s) 204, 303, 327
BstMBI GATC 3 cut(s) 201, 300, 324
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 4 cut(s) 37, 154, 156, 194
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 6 cut(s) 144, 159, 161, 188, 197, 296
BstV2I GAAGAC 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 364
BsuRI GGCC 4 cut(s) 116, 137, 164, 356
BtrI CACGTC 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 212
BveI ACCTGC 1 cut(s) 22
CfoI GCGC 6 cut(s) 144, 150, 159, 161, 199, 239
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 72, 136
CseI GACGC 2 cut(s) 177, 203
Csp6I GTAC 2 cut(s) 127, 307
CviAII CATG 3 cut(s) 10, 310, 328
CviJI RGCY 9 cut(s) 27, 78, 116, 137, 164, 229, 265, 356, 370
CviKI_1 RGCY 9 cut(s) 27, 78, 116, 137, 164, 229, 265, 356, 370
CviQI GTAC 2 cut(s) 127, 307
DdeI CTNAG 2 cut(s) 395, 450
DinI GGCGCC 1 cut(s) 238
DpnI GATC 3 cut(s) 203, 302, 326
DpnII GATC 3 cut(s) 201, 300, 324
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 2 cut(s) 284, 357
Eco47I GGWCC 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
FaeI CATG 3 cut(s) 13, 313, 331
FaiI YATR 4 cut(s) 11, 311, 317, 329
FaqI GGGAC 2 cut(s) 95, 416
FatI CATG 3 cut(s) 9, 309, 327
FauI CCCGC 2 cut(s) 250, 409
Fnu4HI GCNGC 5 cut(s) 162, 222, 235, 263, 297
Fsp4HI GCNGC 5 cut(s) 162, 222, 235, 263, 297
FspAI RTGCGCAY 1 cut(s) 149
FspI TGCGCA 1 cut(s) 149
GlaI GCGC 6 cut(s) 143, 149, 158, 160, 198, 238
GluI GCNGC 5 cut(s) 162, 222, 235, 263, 297
GsuI CTGGAG 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 4 cut(s) 116, 137, 164, 356
HapII CCGG 3 cut(s) 28, 113, 240
HgaI GACGC 2 cut(s) 177, 203
HhaI GCGC 6 cut(s) 144, 150, 159, 161, 199, 239
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 3 cut(s) 13, 313, 331
Hin6I GCGC 6 cut(s) 142, 148, 157, 159, 197, 237
HinP1I GCGC 6 cut(s) 142, 148, 157, 159, 197, 237
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 2 cut(s) 50, 288
HpaII CCGG 3 cut(s) 28, 113, 240
Hpy166II GTNNAC 2 cut(s) 72, 292
Hpy188I TCNGA 3 cut(s) 193, 287, 396
Hpy8I GTNNAC 2 cut(s) 72, 292
Hpy99I CGWCG 2 cut(s) 197, 365
HpyAV CCTTC 3 cut(s) 25, 127, 240
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 2 cut(s) 68, 411
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 154, 156, 194
HpyF3I CTNAG 2 cut(s) 395, 450
HpySE526I ACGT 2 cut(s) 68, 411
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 3 cut(s) 13, 313, 331
HspAI GCGC 6 cut(s) 142, 148, 157, 159, 197, 237
KasI GGCGCC 1 cut(s) 236
KroI GCCGGC 1 cut(s) 27
KroNI GCCGGC 1 cut(s) 29
Kzo9I GATC 3 cut(s) 201, 300, 324
LmnI GCTCC 2 cut(s) 24, 45
LweI GCATC 1 cut(s) 159
MaeII ACGT 2 cut(s) 68, 411
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 203, 302, 326
MboI GATC 3 cut(s) 201, 300, 324
MboII GAAGA 2 cut(s) 37, 165
MhlI GDGCHC 1 cut(s) 211
MlsI TGGCCA 1 cut(s) 356
MluNI TGGCCA 1 cut(s) 356
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 2 cut(s) 44, 297
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 9 cut(s) 53, 95, 113, 116, 127, 140, 175, 178, 236
Mox20I TGGCCA 1 cut(s) 356
MroNI GCCGGC 1 cut(s) 27
MscI TGGCCA 1 cut(s) 356
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 2 cut(s) 314, 362
Msp20I TGGCCA 1 cut(s) 356
MspI CCGG 3 cut(s) 28, 113, 240
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 6 cut(s) 144, 159, 161, 188, 197, 296
MwoI GCNNNNNNNGC 4 cut(s) 37, 154, 156, 194
NaeI GCCGGC 1 cut(s) 29
NarI GGCGCC 1 cut(s) 237
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 201, 300, 324
NgoMIV GCCGGC 1 cut(s) 27
NlaIII CATG 3 cut(s) 13, 313, 331
NlaIV GGNNCC 2 cut(s) 26, 238
NmeAIII GCCGAG 2 cut(s) 210, 233
NsbI TGCGCA 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 131
PauI GCGCGC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PdiI GCCGGC 1 cut(s) 29
PkrI GCNGC 5 cut(s) 163, 223, 236, 264, 298
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 2 cut(s) 44, 296
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 2 cut(s) 44, 296
Ppu21I YACGTR 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 26, 238
PspPI GGNCC 2 cut(s) 72, 136
PspXI VCTCGAGB 1 cut(s) 131
PteI GCGCGC 1 cut(s) 157
PvuI CGATCG 1 cut(s) 303
RsaI GTAC 2 cut(s) 128, 308
RsaNI GTAC 2 cut(s) 127, 307
RseI CAYNNNNRTG 2 cut(s) 314, 362
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 5 cut(s) 162, 222, 235, 263, 297
Sau3AI GATC 3 cut(s) 201, 300, 324
Sau96I GGNCC 2 cut(s) 72, 136
SchI GAGTC 2 cut(s) 44, 297
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 211
SetI ASST 8 cut(s) 17, 36, 71, 80, 132, 231, 251, 414
SfaNI GCATC 1 cut(s) 159
SfoI GGCGCC 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 2 cut(s) 314, 362
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SspDI GGCGCC 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 2 cut(s) 71, 414
TaqI TCGA 2 cut(s) 48, 132
TauI GCSGC 5 cut(s) 164, 224, 237, 265, 299
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 219
TspGWI ACGGA 2 cut(s) 194, 426
TspRI CASTG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 72
XhoI CTCGAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.