RLG00000010359

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013368
Physical Location & Seq
Forward (+)
974279 .. 974728
450 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010359

Sequence Viewer

Length: 450 bp
ATGATGCACATGACGTTCTACTGGAGCAAGCAGGTGACGCTCCTGTTCGACTCTTGGAGCACCACCACGTGGCTCGGCTACGCCCTCACGCTCCTCGCCTGCCTTATCGTCCCGGCGTTCTACCAGTACCTTGAGGGCCTGCGCGTGCGCCTCAGGCTCGCGTCTTCGGCCAGGAAGGCGGCGGCGGCGGCGGGGTCCGATCTGATCGAGACTCCGCTCCTGCGAGCCAAGCCTGCCGGAGGAGGGAAGTTCTCTGTGGTTAAGTTGGCCGGAGCCGTGATCTTCGCCGTGAATTCTGCGATCGGGTACATGCTGATGCTGGCGGTGATGTCGTACAACGGCGGCGTTTTCGTGGCGATCGTTTTGGGGTTGGCGATTGGGTATTTGTTTTTCAGGAGTGGAGATGAGGAAGTTTCGGTTGCGGTTGAAAATCCCTGTGCTTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

150

Amino Acids

15.99

Weight (kDa)

8.84

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 4 - 131 3.5e-24 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20650
fragaria_vesca FvH4_2g30830
malus_domestica MD08G1044900.v1.1 MD08G1045600.v1.1 MD15G1048000.v1.1
prunus_persica Prupe.1G402400_v2.0.a1
pyrus_communis pycom07g27270
rosa_chinensis RchiOBHm_Chr6g0312031
rosa_laevigata RLG00000010359
rosa_multiflora Rmu_co8125252.1_g000001 Rmu_sc0005381.1_g000009
rosa_roxburghii Rroxscaffold_7G00157130
rosa_rugosa Rorug06G0392400
rosa_samantha Rh6AG508800 Rh6BG520100 Rh6CG526000 Rh6DG511500
rosa_wichuraiana Rw6G044310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 69
AccBSI CCGCTC 1 cut(s) 217
AccII CGCG 2 cut(s) 144, 161
AciI CCGC 9 cut(s) 179, 182, 185, 188, 191, 215, 323, 342, 422
AcoI YGGCCR 2 cut(s) 168, 267
AcsI RAATTY 1 cut(s) 292
AcvI CACGTG 1 cut(s) 69
AdeI CACNNNGTG 1 cut(s) 69
AfaI GTAC 3 cut(s) 128, 308, 335
AfiI CCNNNNNNNGG 3 cut(s) 69, 239, 243
AgsI TTSAA 1 cut(s) 428
AjnI CCWGG 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 203
AoxI GGCC 3 cut(s) 136, 168, 267
ApoI RAATTY 1 cut(s) 292
AspLEI GCGC 2 cut(s) 144, 150
AspS9I GGNCC 2 cut(s) 136, 195
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 46, 337
AvaII GGWCC 1 cut(s) 195
AxyI CCTNAGG 1 cut(s) 152
BbrPI CACGTG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 62
BceAI ACGGC 3 cut(s) 260, 272, 355
BciT130I CCWGG 1 cut(s) 172
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 22
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 5 cut(s) 180, 183, 186, 189, 343
BlsI GCNGC 5 cut(s) 181, 184, 187, 190, 344
Bme1390I CCNGG 2 cut(s) 113, 172
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 136, 195
BmiI GGNNCC 2 cut(s) 196, 274
BmrFI CCNGG 2 cut(s) 113, 172
BmsI GCATC 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 69
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 239, 243
Bse1I ACTGG 2 cut(s) 26, 124
Bse21I CCTNAGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 172
BseLI CCNNNNNNNGG 3 cut(s) 69, 239, 243
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 2 cut(s) 26, 124
BseRI GAGGAG 2 cut(s) 83, 255
Bsh1236I CGCG 2 cut(s) 144, 161
Bsh1285I CGRYCG 2 cut(s) 303, 360
BshFI GGCC 3 cut(s) 138, 170, 269
BsiEI CGRYCG 2 cut(s) 303, 360
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 3 cut(s) 113, 237, 270
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 3 cut(s) 69, 239, 243
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 3 cut(s) 138, 170, 269
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 5 cut(s) 199, 204, 279, 300, 357
BspACI CCGC 9 cut(s) 179, 182, 185, 188, 191, 215, 323, 342, 422
BspANI GGCC 3 cut(s) 138, 170, 269
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 2 cut(s) 144, 161
BspLI GGNNCC 2 cut(s) 196, 274
BspMI ACCTGC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 217
BsrI ACTGG 2 cut(s) 26, 124
BssMI GATC 5 cut(s) 199, 204, 279, 300, 357
Bst2UI CCWGG 1 cut(s) 172
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 8 cut(s) 29, 100, 140, 146, 159, 225, 234, 321
BstDEI CTNAG 2 cut(s) 152, 447
BstENI CCTNNNNNAGG 1 cut(s) 237
BstFNI CGCG 2 cut(s) 144, 161
BstHHI GCGC 2 cut(s) 144, 150
BstKTI GATC 5 cut(s) 202, 207, 282, 303, 360
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 5 cut(s) 199, 204, 279, 300, 357
BstMCI CGRYCG 2 cut(s) 303, 360
BstMWI GCNNNNNNNGC 8 cut(s) 37, 154, 167, 176, 185, 188, 229, 233
BstNI CCWGG 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 111, 170
BstUI CGCG 2 cut(s) 144, 161
BstV2I GAAGAC 1 cut(s) 156
Bsu36I CCTNAGG 1 cut(s) 152
BsuRI GGCC 3 cut(s) 138, 170, 269
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 8 cut(s) 29, 100, 140, 146, 159, 225, 234, 321
CfoI GCGC 2 cut(s) 144, 150
Cfr13I GGNCC 2 cut(s) 136, 195
CseI GACGC 2 cut(s) 46, 150
Csp6I GTAC 3 cut(s) 127, 307, 334
CviAII CATG 2 cut(s) 10, 310
CviJI RGCY 9 cut(s) 73, 78, 138, 157, 170, 227, 232, 269, 275
CviKI_1 RGCY 9 cut(s) 73, 78, 138, 157, 170, 227, 232, 269, 275
CviQI GTAC 3 cut(s) 127, 307, 334
DdeI CTNAG 2 cut(s) 152, 447
DpnI GATC 5 cut(s) 201, 206, 281, 302, 359
DpnII GATC 5 cut(s) 199, 204, 279, 300, 357
DraIII CACNNNGTG 1 cut(s) 69
EaeI YGGCCR 2 cut(s) 168, 267
Eco47I GGWCC 1 cut(s) 195
Eco72I CACGTG 1 cut(s) 69
Eco81I CCTNAGG 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 13, 313
FaiI YATR 2 cut(s) 11, 311
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 9, 309
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 5 cut(s) 180, 183, 186, 189, 343
Fsp4HI GCNGC 5 cut(s) 180, 183, 186, 189, 343
GlaI GCGC 2 cut(s) 143, 149
GluI GCNGC 5 cut(s) 180, 183, 186, 189, 343
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 3 cut(s) 138, 170, 269
HapII CCGG 3 cut(s) 113, 237, 270
HgaI GACGC 2 cut(s) 46, 150
HhaI GCGC 2 cut(s) 144, 150
Hin1II CATG 2 cut(s) 13, 313
Hin6I GCGC 2 cut(s) 142, 148
HinP1I GCGC 2 cut(s) 142, 148
HinfI GANTC 2 cut(s) 50, 211
HpaII CCGG 3 cut(s) 113, 237, 270
HphI GGTGA 2 cut(s) 46, 337
Hpy188I TCNGA 2 cut(s) 199, 204
Hpy188III TCNNGA 2 cut(s) 208, 394
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 14, 68
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 8 cut(s) 37, 154, 167, 176, 185, 188, 229, 233
HpyF3I CTNAG 2 cut(s) 152, 447
HpySE526I ACGT 2 cut(s) 14, 68
Hsp92II CATG 2 cut(s) 13, 313
HspAI GCGC 2 cut(s) 142, 148
Kzo9I GATC 5 cut(s) 199, 204, 279, 300, 357
LmnI GCTCC 6 cut(s) 24, 45, 57, 96, 222, 272
LweI GCATC 1 cut(s) 306
MaeII ACGT 2 cut(s) 14, 68
MaeIII GTNAC 1 cut(s) 34
MalI GATC 5 cut(s) 201, 206, 281, 302, 359
MbiI CCGCTC 1 cut(s) 217
MboI GATC 5 cut(s) 199, 204, 279, 300, 357
MboII GAAGA 2 cut(s) 156, 274
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 292
MlyI GAGTC 2 cut(s) 44, 205
MnlI CCTC 7 cut(s) 95, 104, 127, 161, 233, 236, 400
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 314
MspI CCGG 3 cut(s) 113, 237, 270
MspR9I CCNGG 2 cut(s) 113, 172
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 2 cut(s) 144, 161
MwoI GCNNNNNNNGC 8 cut(s) 37, 154, 167, 176, 185, 188, 229, 233
NciI CCSGG 1 cut(s) 113
NdeII GATC 5 cut(s) 199, 204, 279, 300, 357
NlaIII CATG 2 cut(s) 13, 313
NlaIV GGNNCC 2 cut(s) 196, 274
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PflMI CCANNNNNTGG 1 cut(s) 69
PkrI GCNGC 5 cut(s) 181, 184, 187, 190, 344
Ple19I CGATCG 2 cut(s) 303, 360
PleI GAGTC 2 cut(s) 44, 205
PmaCI CACGTG 1 cut(s) 69
PmlI CACGTG 1 cut(s) 69
PpsI GAGTC 2 cut(s) 44, 205
Ppu21I YACGTR 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 170
PspCI CACGTG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 196, 274
PspPI GGNCC 2 cut(s) 136, 195
PvuI CGATCG 2 cut(s) 303, 360
RsaI GTAC 3 cut(s) 128, 308, 335
RsaNI GTAC 3 cut(s) 127, 307, 334
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 5 cut(s) 180, 183, 186, 189, 343
Sau3AI GATC 5 cut(s) 199, 204, 279, 300, 357
Sau96I GGNCC 2 cut(s) 136, 195
SchI GAGTC 2 cut(s) 44, 205
ScrFI CCNGG 2 cut(s) 113, 172
SduI GDGCHC 1 cut(s) 62
SetI ASST 4 cut(s) 17, 36, 71, 132
SfaNI GCATC 1 cut(s) 306
SinI GGWCC 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 1 cut(s) 292
SsiI CCGC 9 cut(s) 179, 182, 185, 188, 191, 215, 323, 342, 422
StyD4I CCNGG 2 cut(s) 111, 170
TaiI ACGT 2 cut(s) 17, 71
TaqI TCGA 2 cut(s) 48, 207
TasI AATT 1 cut(s) 292
TauI GCSGC 5 cut(s) 182, 185, 188, 191, 345
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 195
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 1 cut(s) 292
XceI RCATGY 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.