MD08G1045600.v1.1

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013368
Physical Location & Seq
Reverse (-)
3454305 .. 3454757
453 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1045600.v1.1.491

Sequence Viewer

Length: 453 bp
ATGATGCACATGACCTTCTACTGGAGCCGGCAGGTAACGCTCCTCTTCGACTCGTGGAAAACCGACACGTGGGCGAGCTACTCCCTCACGCTGCTCGCCTGCCTTCTCGTCCCTGCCTTCTACCGGTACCTCGAGGACCTGCGCGTGCGCATCAAGCGCGCGGCCTCCTCGTCTTCCTTGAAATCGGCGTCCGACGCGCCGATCCGGACCCCGCTGATCGGCTCCAAGCTCGGCGGCGCCGGAGGGAGGTTCTCGGCAGGGAGGCTGGCGGAGAGCGTGCTTTTCGGAGTCAACGCGGCGATCGGGTACATGATTATGCTGGCGATCATGTCGTTTAACGGGGGAGTGTTCGTGGCCATCGTTTTGGGGCTGGCGATTGGTTACTGGGCGTTTCGGAGTGGGGACGTTGACGTGGCGCGTGTGGTGGTGGATAATTCGTGTGCGTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

151

Amino Acids

16.26

Weight (kDa)

9.37

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 4 - 131 3.1e-23 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20650
fragaria_vesca FvH4_2g30830
malus_domestica MD08G1044900.v1.1 MD08G1045600.v1.1 MD15G1048000.v1.1
prunus_persica Prupe.1G402400_v2.0.a1
pyrus_communis pycom07g27270
rosa_chinensis RchiOBHm_Chr6g0312031
rosa_laevigata RLG00000010359
rosa_multiflora Rmu_co8125252.1_g000001 Rmu_sc0005381.1_g000009
rosa_roxburghii Rroxscaffold_7G00157130
rosa_rugosa Rorug06G0392400
rosa_samantha Rh6AG508800 Rh6BG520100 Rh6CG526000 Rh6DG511500
rosa_wichuraiana Rw6G044310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 131
Acc16I TGCGCA 1 cut(s) 149
Acc36I ACCTGC 2 cut(s) 22, 147
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 2 cut(s) 126, 236
AccII CGCG 6 cut(s) 144, 159, 161, 197, 296, 418
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 5 cut(s) 161, 212, 234, 269, 296
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 354
AcvI CACGTG 1 cut(s) 69
AcyI GRCGYC 2 cut(s) 188, 237
AfaI GTAC 2 cut(s) 128, 308
AfiI CCNNNNNNNGG 5 cut(s) 21, 69, 123, 218, 246
AflIII ACRYGT 1 cut(s) 66
AgeI ACCGGT 1 cut(s) 123
AgsI TTSAA 1 cut(s) 181
AjiI CACGTC 1 cut(s) 412
AluBI AGCT 2 cut(s) 78, 229
AluI AGCT 2 cut(s) 78, 229
AlwI GGATC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 2 cut(s) 162, 354
ApeKI GCWGC 1 cut(s) 91
AsiGI ACCGGT 1 cut(s) 123
Asp718I GGTACC 1 cut(s) 126
AspLEI GCGC 7 cut(s) 144, 150, 159, 161, 199, 239, 418
AspS9I GGNCC 2 cut(s) 136, 207
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 2 cut(s) 136, 207
BalI TGGCCA 1 cut(s) 356
BanI GGYRCC 2 cut(s) 126, 236
BauI CACGAG 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 365
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 2 cut(s) 22, 147
BisI GCNGC 4 cut(s) 92, 162, 235, 297
BlsI GCNGC 4 cut(s) 93, 163, 236, 298
Bme18I GGWCC 2 cut(s) 136, 207
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 136, 207
BmiI GGNNCC 5 cut(s) 26, 128, 209, 223, 238
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 69
BsaHI GRCGYC 2 cut(s) 188, 237
BsaWI WCCGGW 2 cut(s) 123, 204
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 5 cut(s) 21, 69, 123, 218, 246
Bse118I RCCGGY 2 cut(s) 27, 123
Bse1I ACTGG 2 cut(s) 26, 389
BseAI TCCGGA 1 cut(s) 204
BseLI CCNNNNNNNGG 5 cut(s) 21, 69, 123, 218, 246
BseNI ACTGG 2 cut(s) 26, 389
BsePI GCGCGC 1 cut(s) 157
BseRI GAGGAG 2 cut(s) 32, 157
BseXI GCAGC 1 cut(s) 78
Bsh1236I CGCG 6 cut(s) 144, 159, 161, 197, 296, 418
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 164, 356
BshNI GGYRCC 2 cut(s) 126, 236
BshTI ACCGGT 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 4 cut(s) 28, 124, 205, 240
BslFI GGGAC 2 cut(s) 95, 416
BslI CCNNNNNNNGG 5 cut(s) 21, 69, 123, 218, 246
BsmFI GGGAC 2 cut(s) 95, 416
BsnI GGCC 2 cut(s) 164, 356
BsoBI CYCGRG 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 4 cut(s) 201, 216, 300, 324
BspACI CCGC 5 cut(s) 161, 212, 234, 269, 296
BspANI GGCC 2 cut(s) 164, 356
BspEI TCCGGA 1 cut(s) 204
BspFNI CGCG 6 cut(s) 144, 159, 161, 197, 296, 418
BspLI GGNNCC 5 cut(s) 26, 128, 209, 223, 238
BspMI ACCTGC 2 cut(s) 22, 147
BspPI GGATC 1 cut(s) 196
BspT107I GGYRCC 2 cut(s) 126, 236
BsrFI RCCGGY 2 cut(s) 27, 123
BsrI ACTGG 2 cut(s) 26, 389
BssAI RCCGGY 2 cut(s) 27, 123
BssHII GCGCGC 1 cut(s) 157
BssMI GATC 4 cut(s) 201, 216, 300, 324
BssNI GRCGYC 2 cut(s) 188, 237
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 2 cut(s) 188, 237
BstBAI YACGTR 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 450
BstFNI CGCG 6 cut(s) 144, 159, 161, 197, 296, 418
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 7 cut(s) 144, 150, 159, 161, 199, 239, 418
BstKTI GATC 4 cut(s) 204, 219, 303, 327
BstMBI GATC 4 cut(s) 201, 216, 300, 324
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 4 cut(s) 37, 154, 156, 194
BstUI CGCG 6 cut(s) 144, 159, 161, 197, 296, 418
BstV1I GCAGC 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 364
BsuRI GGCC 2 cut(s) 164, 356
BtrI CACGTC 1 cut(s) 412
BveI ACCTGC 2 cut(s) 22, 147
CfoI GCGC 7 cut(s) 144, 150, 159, 161, 199, 239, 418
Cfr10I RCCGGY 2 cut(s) 27, 123
Cfr13I GGNCC 2 cut(s) 136, 207
CseI GACGC 2 cut(s) 177, 203
Csp6I GTAC 2 cut(s) 127, 307
CspAI ACCGGT 1 cut(s) 123
CviAII CATG 3 cut(s) 10, 310, 328
CviJI RGCY 8 cut(s) 27, 78, 164, 222, 229, 265, 356, 370
CviKI_1 RGCY 8 cut(s) 27, 78, 164, 222, 229, 265, 356, 370
CviQI GTAC 2 cut(s) 127, 307
DdeI CTNAG 1 cut(s) 450
DinI GGCGCC 1 cut(s) 238
DpnI GATC 4 cut(s) 203, 218, 302, 326
DpnII GATC 4 cut(s) 201, 216, 300, 324
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 136, 207
Eco72I CACGTG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
FaeI CATG 3 cut(s) 13, 313, 331
FaiI YATR 4 cut(s) 11, 311, 317, 329
FaqI GGGAC 2 cut(s) 95, 416
FatI CATG 3 cut(s) 9, 309, 327
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 4 cut(s) 92, 162, 235, 297
Fsp4HI GCNGC 4 cut(s) 92, 162, 235, 297
FspAI RTGCGCAY 1 cut(s) 149
FspI TGCGCA 1 cut(s) 149
GlaI GCGC 7 cut(s) 143, 149, 158, 160, 198, 238, 417
GluI GCNGC 4 cut(s) 92, 162, 235, 297
GsuI CTGGAG 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 2 cut(s) 164, 356
HapII CCGG 4 cut(s) 28, 124, 205, 240
HgaI GACGC 2 cut(s) 177, 203
HhaI GCGC 7 cut(s) 144, 150, 159, 161, 199, 239, 418
Hin1I GRCGYC 2 cut(s) 188, 237
Hin1II CATG 3 cut(s) 13, 313, 331
Hin6I GCGC 7 cut(s) 142, 148, 157, 159, 197, 237, 416
HinP1I GCGC 7 cut(s) 142, 148, 157, 159, 197, 237, 416
HincII GTYRAC 2 cut(s) 292, 409
HindII GTYRAC 2 cut(s) 292, 409
HinfI GANTC 2 cut(s) 50, 288
HpaII CCGG 4 cut(s) 28, 124, 205, 240
Hpy166II GTNNAC 2 cut(s) 292, 409
Hpy188I TCNGA 3 cut(s) 193, 287, 396
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 2 cut(s) 292, 409
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 25, 113, 127
HpyCH4IV ACGT 3 cut(s) 68, 405, 411
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 154, 156, 194
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 3 cut(s) 68, 405, 411
Hsp92I GRCGYC 2 cut(s) 188, 237
Hsp92II CATG 3 cut(s) 13, 313, 331
HspAI GCGC 7 cut(s) 142, 148, 157, 159, 197, 237, 416
KasI GGCGCC 1 cut(s) 236
Kpn2I TCCGGA 1 cut(s) 204
KpnI GGTACC 1 cut(s) 130
KroI GCCGGC 1 cut(s) 27
KroNI GCCGGC 1 cut(s) 29
Kzo9I GATC 4 cut(s) 201, 216, 300, 324
LmnI GCTCC 3 cut(s) 24, 45, 227
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 1 cut(s) 159
MaeII ACGT 3 cut(s) 68, 405, 411
MaeIII GTNAC 2 cut(s) 34, 380
MalI GATC 4 cut(s) 203, 218, 302, 326
MboI GATC 4 cut(s) 201, 216, 300, 324
MboII GAAGA 2 cut(s) 37, 165
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 1 cut(s) 433
MluNI TGGCCA 1 cut(s) 356
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 2 cut(s) 44, 297
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 9 cut(s) 53, 95, 127, 140, 175, 178, 236, 240, 255
Mox20I TGGCCA 1 cut(s) 356
MroI TCCGGA 1 cut(s) 204
MroNI GCCGGC 1 cut(s) 27
MscI TGGCCA 1 cut(s) 356
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 314
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 214
MspI CCGG 4 cut(s) 28, 124, 205, 240
MvnI CGCG 6 cut(s) 144, 159, 161, 197, 296, 418
MwoI GCNNNNNNNGC 4 cut(s) 37, 154, 156, 194
NaeI GCCGGC 1 cut(s) 29
NarI GGCGCC 1 cut(s) 237
NdeII GATC 4 cut(s) 201, 216, 300, 324
NgoMIV GCCGGC 1 cut(s) 27
NlaIII CATG 3 cut(s) 13, 313, 331
NlaIV GGNNCC 5 cut(s) 26, 128, 209, 223, 238
NmeAIII GCCGAG 2 cut(s) 210, 233
NsbI TGCGCA 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 131
PauI GCGCGC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PdiI GCCGGC 1 cut(s) 29
PinAI ACCGGT 1 cut(s) 123
PkrI GCNGC 4 cut(s) 93, 163, 236, 298
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 2 cut(s) 44, 296
PluTI GGCGCC 1 cut(s) 240
PmaCI CACGTG 1 cut(s) 69
PmlI CACGTG 1 cut(s) 69
PpsI GAGTC 2 cut(s) 44, 296
Ppu21I YACGTR 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
PspCI CACGTG 1 cut(s) 69
PspN4I GGNNCC 5 cut(s) 26, 128, 209, 223, 238
PspPI GGNCC 2 cut(s) 136, 207
PspPPI RGGWCCY 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 131
PteI GCGCGC 1 cut(s) 157
PvuI CGATCG 1 cut(s) 303
RsaI GTAC 2 cut(s) 128, 308
RsaNI GTAC 2 cut(s) 127, 307
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 4 cut(s) 92, 162, 235, 297
Sau3AI GATC 4 cut(s) 201, 216, 300, 324
Sau96I GGNCC 2 cut(s) 136, 207
SchI GAGTC 2 cut(s) 44, 297
SfaNI GCATC 1 cut(s) 159
SfoI GGCGCC 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 2 cut(s) 136, 207
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 1 cut(s) 433
SsiI CCGC 5 cut(s) 161, 212, 234, 269, 296
SspDI GGCGCC 1 cut(s) 236
TaiI ACGT 3 cut(s) 71, 408, 414
TaqI TCGA 2 cut(s) 48, 132
TasI AATT 1 cut(s) 433
TauI GCSGC 3 cut(s) 164, 237, 299
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 1 cut(s) 91
VpaK11BI GGWCC 2 cut(s) 136, 207
XhoI CTCGAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.