MD15G1048000.v1.1

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013368
Physical Location & Seq
Forward (+)
3284715 .. 3285173
459 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1048000.v1.1.491

Sequence Viewer

Length: 459 bp
ATGATGCACATGACCTTCTACTGGAGCCGGCAGGTCACGCTCCTCTTTGACTCGTGGAAAACCAACACGTGGACGAGCTACTCCCTCACGCTGCTCGCCTGCCTCATCGTCCCGGCCTTCTACCAGTACCTCGAGAATCTGCGGGTGCGGATCAAGCGCGCAGCCTCCTCGTCTTCCCCGAAATCGGAGTCCGACTCGCCGATCCGGACCCCGCTGCTCGCCGCCAAGCTCGGCGGTGCCGGAGGAAGGTTCTCGGCGTGGCGGCTGGCGGAGAGCGTGCTTTTCGGAGTCAACTCGGCGATCGGGTACATGATTATGCTGGCGATCATGTCGTTTAACGGCGGAGTGTTCGTGGCCATCGTTGTGGGGCTGGCGATTGGTTACTTGGCGTTTCGGAGTGGGGACGATGACGTGGTGGGTGCGGTGGTGGAGACTGATAATCCGTGTGCGTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

153

Amino Acids

16.53

Weight (kDa)

8.5

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 4 - 131 7.2e-25 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20650
fragaria_vesca FvH4_2g30830
malus_domestica MD08G1044900.v1.1 MD08G1045600.v1.1 MD15G1048000.v1.1
prunus_persica Prupe.1G402400_v2.0.a1
pyrus_communis pycom07g27270
rosa_chinensis RchiOBHm_Chr6g0312031
rosa_laevigata RLG00000010359
rosa_multiflora Rmu_co8125252.1_g000001 Rmu_sc0005381.1_g000009
rosa_roxburghii Rroxscaffold_7G00157130
rosa_rugosa Rorug06G0392400
rosa_samantha Rh6AG508800 Rh6BG520100 Rh6CG526000 Rh6DG511500
rosa_wichuraiana Rw6G044310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 69
AccII CGCG 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 9 cut(s) 142, 148, 212, 222, 234, 262, 269, 342, 422
AclWI GGATC 2 cut(s) 158, 196
AcoI YGGCCR 1 cut(s) 354
AcvI CACGTG 1 cut(s) 69
AfaI GTAC 2 cut(s) 128, 308
AfiI CCNNNNNNNGG 4 cut(s) 21, 69, 184, 246
AflIII ACRYGT 1 cut(s) 66
AjiI CACGTC 1 cut(s) 412
AluBI AGCT 2 cut(s) 78, 229
AluI AGCT 2 cut(s) 78, 229
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 2 cut(s) 158, 196
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 2 cut(s) 114, 354
ApeKI GCWGC 3 cut(s) 91, 161, 214
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspLEI GCGC 2 cut(s) 159, 161
AspS9I GGNCC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 207
BalI TGGCCA 1 cut(s) 356
BanI GGYRCC 1 cut(s) 236
BauI CACGAG 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 78, 173, 201
BccI CCATC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 150, 184
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 5 cut(s) 92, 162, 215, 222, 263
BlsI GCNGC 5 cut(s) 93, 163, 216, 223, 264
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 3 cut(s) 26, 209, 238
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BpmI CTGGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 69, 184, 246
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 2 cut(s) 26, 124
BseAI TCCGGA 1 cut(s) 204
BseLI CCNNNNNNNGG 4 cut(s) 21, 69, 184, 246
BseNI ACTGG 2 cut(s) 26, 124
BsePI GCGCGC 1 cut(s) 157
BseRI GAGGAG 2 cut(s) 32, 157
BseXI GCAGC 3 cut(s) 78, 173, 201
Bsh1236I CGCG 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 116, 356
BshNI GGYRCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 4 cut(s) 28, 113, 205, 240
BslFI GGGAC 2 cut(s) 95, 416
BslI CCNNNNNNNGG 4 cut(s) 21, 69, 184, 246
BsmAI GTCTC 1 cut(s) 425
BsmFI GGGAC 2 cut(s) 95, 416
BsnI GGCC 2 cut(s) 116, 356
BsoBI CYCGRG 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 4 cut(s) 150, 201, 300, 324
BspACI CCGC 9 cut(s) 142, 148, 212, 222, 234, 262, 269, 342, 422
BspANI GGCC 2 cut(s) 116, 356
BspEI TCCGGA 1 cut(s) 204
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 3 cut(s) 26, 209, 238
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 2 cut(s) 158, 196
BspT107I GGYRCC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 2 cut(s) 26, 124
BssAI RCCGGY 1 cut(s) 27
BssHII GCGCGC 1 cut(s) 157
BssMI GATC 4 cut(s) 150, 201, 300, 324
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 9 cut(s) 29, 96, 100, 159, 219, 267, 278, 321, 372
BstDEI CTNAG 1 cut(s) 456
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 2 cut(s) 159, 161
BstKTI GATC 4 cut(s) 153, 204, 303, 327
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 4 cut(s) 150, 201, 300, 324
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 2 cut(s) 37, 154
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 78, 173, 201
BstV2I GAAGAC 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 364
BsuRI GGCC 2 cut(s) 116, 356
BtrI CACGTC 1 cut(s) 412
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 9 cut(s) 29, 96, 100, 159, 219, 267, 278, 321, 372
CfoI GCGC 2 cut(s) 159, 161
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 127, 307
CviAII CATG 3 cut(s) 10, 310, 328
CviJI RGCY 8 cut(s) 27, 78, 116, 164, 229, 265, 356, 370
CviKI_1 RGCY 8 cut(s) 27, 78, 116, 164, 229, 265, 356, 370
CviQI GTAC 2 cut(s) 127, 307
DdeI CTNAG 1 cut(s) 456
DpnI GATC 4 cut(s) 152, 203, 302, 326
DpnII GATC 4 cut(s) 150, 201, 300, 324
EaeI YGGCCR 1 cut(s) 354
EciI GGCGGA 2 cut(s) 284, 357
Eco47I GGWCC 1 cut(s) 207
Eco72I CACGTG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 131
FaeI CATG 3 cut(s) 13, 313, 331
FaiI YATR 4 cut(s) 11, 311, 317, 329
FaqI GGGAC 2 cut(s) 95, 416
FatI CATG 3 cut(s) 9, 309, 327
FauI CCCGC 2 cut(s) 135, 219
Fnu4HI GCNGC 5 cut(s) 92, 162, 215, 222, 263
Fsp4HI GCNGC 5 cut(s) 92, 162, 215, 222, 263
GlaI GCGC 2 cut(s) 158, 160
GluI GCNGC 5 cut(s) 92, 162, 215, 222, 263
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 2 cut(s) 116, 356
HapII CCGG 4 cut(s) 28, 113, 205, 240
HhaI GCGC 2 cut(s) 159, 161
Hin1II CATG 3 cut(s) 13, 313, 331
Hin6I GCGC 2 cut(s) 157, 159
HinP1I GCGC 2 cut(s) 157, 159
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 5 cut(s) 50, 136, 188, 194, 288
HpaII CCGG 4 cut(s) 28, 113, 205, 240
Hpy166II GTNNAC 2 cut(s) 72, 292
Hpy188I TCNGA 4 cut(s) 187, 193, 287, 396
Hpy188III TCNNGA 2 cut(s) 133, 205
Hpy8I GTNNAC 2 cut(s) 72, 292
HpyAV CCTTC 3 cut(s) 25, 127, 240
HpyCH4IV ACGT 2 cut(s) 68, 411
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 154
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 2 cut(s) 68, 411
Hsp92II CATG 3 cut(s) 13, 313, 331
HspAI GCGC 2 cut(s) 157, 159
Kpn2I TCCGGA 1 cut(s) 204
KroI GCCGGC 1 cut(s) 27
KroNI GCCGGC 1 cut(s) 29
Kzo9I GATC 4 cut(s) 150, 201, 300, 324
LmnI GCTCC 2 cut(s) 24, 45
Lsp1109I GCAGC 3 cut(s) 78, 173, 201
MaeII ACGT 2 cut(s) 68, 411
MaeIII GTNAC 2 cut(s) 34, 380
MalI GATC 4 cut(s) 152, 203, 302, 326
MboI GATC 4 cut(s) 150, 201, 300, 324
MboII GAAGA 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 356
MluNI TGGCCA 1 cut(s) 356
MlyI GAGTC 4 cut(s) 44, 188, 197, 297
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 7 cut(s) 53, 95, 113, 140, 175, 178, 236
Mox20I TGGCCA 1 cut(s) 356
MroI TCCGGA 1 cut(s) 204
MroNI GCCGGC 1 cut(s) 27
MscI TGGCCA 1 cut(s) 356
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 2 cut(s) 314, 362
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 214
MspI CCGG 4 cut(s) 28, 113, 205, 240
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 37, 154
NaeI GCCGGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 113
NdeII GATC 4 cut(s) 150, 201, 300, 324
NgoMIV GCCGGC 1 cut(s) 27
NlaIII CATG 3 cut(s) 13, 313, 331
NlaIV GGNNCC 3 cut(s) 26, 209, 238
NmeAIII GCCGAG 3 cut(s) 210, 233, 275
NmuCI GTSAC 1 cut(s) 34
PaeR7I CTCGAG 1 cut(s) 131
PauI GCGCGC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 2 cut(s) 176, 357
PdiI GCCGGC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 69
PkrI GCNGC 5 cut(s) 93, 163, 216, 223, 264
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 4 cut(s) 44, 188, 196, 296
PmaCI CACGTG 1 cut(s) 69
PmlI CACGTG 1 cut(s) 69
PpsI GAGTC 4 cut(s) 44, 188, 196, 296
Ppu21I YACGTR 1 cut(s) 69
PspCI CACGTG 1 cut(s) 69
PspN4I GGNNCC 3 cut(s) 26, 209, 238
PspPI GGNCC 1 cut(s) 207
PteI GCGCGC 1 cut(s) 157
PvuI CGATCG 1 cut(s) 303
RsaI GTAC 2 cut(s) 128, 308
RsaNI GTAC 2 cut(s) 127, 307
RseI CAYNNNNRTG 2 cut(s) 314, 362
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 5 cut(s) 92, 162, 215, 222, 263
Sau3AI GATC 4 cut(s) 150, 201, 300, 324
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 4 cut(s) 44, 188, 197, 297
ScrFI CCNGG 1 cut(s) 113
SetI ASST 8 cut(s) 17, 36, 71, 80, 132, 231, 251, 414
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 207
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 2 cut(s) 314, 362
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SsiI CCGC 9 cut(s) 142, 148, 212, 222, 234, 262, 269, 342, 422
StyD4I CCNGG 1 cut(s) 111
TaiI ACGT 2 cut(s) 71, 414
TaqI TCGA 1 cut(s) 132
TauI GCSGC 2 cut(s) 224, 265
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 3 cut(s) 91, 161, 214
Tsp45I GTSAC 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 432
Van91I CCANNNNNTGG 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 207
XhoI CTCGAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.