Rh6DG511500

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013368
Physical Location & Seq
Reverse (-)
66463018 .. 66463464
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG511500.1

Sequence Viewer

Length: 447 bp
ATGATGCACATGACGTTCTACTGGAGCAAGCAGGTGACGCTCCTGTTCGACTCGTGGAGCACCACCACGTGGCTCGGCTACGCCCTCACGCTCCTCGCCTGCCTCATCGTCCCGGCGTTCTACCAGTACCTCGAGGGCCTGCGCGTGCGCCTCAGGCTCGCGTCTTCGGCGGTTAAGGCGGCGGCGGCGGCGTCCGATCCGATCGAGACTCCGCTCCTGTCAGCCAAGCTCGCCGGAGGAGGGAAGTTCTCTGTGGTTAAGTTGGCCGGAGCCGTGATCTTCGCCGTGAATTCTGCGATCGGGTACATGCTGATGCTGGCGGTGATGTCGTACAACGGCGGCGTTTTCGTGGCGATCGTTTTGGGGTTGGCGATTGGGTATTTGTTTTTCAGGAGTGGAGATGAGGAAGTTTCGGCTGCGGTTGAAAATCCCTGTGCTTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

148

Amino Acids

15.78

Weight (kDa)

7.68

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 4 - 130 6.7e-23 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20650
fragaria_vesca FvH4_2g30830
malus_domestica MD08G1044900.v1.1 MD08G1045600.v1.1 MD15G1048000.v1.1
prunus_persica Prupe.1G402400_v2.0.a1
pyrus_communis pycom07g27270
rosa_chinensis RchiOBHm_Chr6g0312031
rosa_laevigata RLG00000010359
rosa_multiflora Rmu_co8125252.1_g000001 Rmu_sc0005381.1_g000009
rosa_roxburghii Rroxscaffold_7G00157130
rosa_rugosa Rorug06G0392400
rosa_samantha Rh6AG508800 Rh6BG520100 Rh6CG526000 Rh6DG511500
rosa_wichuraiana Rw6G044310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
AbsI CCTCGAGG 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 69
AccBSI CCGCTC 1 cut(s) 214
AccII CGCG 2 cut(s) 144, 161
AciI CCGC 9 cut(s) 170, 179, 182, 185, 188, 212, 320, 339, 419
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 289
AcvI CACGTG 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 191
AdeI CACNNNGTG 1 cut(s) 69
AfaI GTAC 3 cut(s) 128, 305, 332
AfiI CCNNNNNNNGG 2 cut(s) 69, 240
AgsI TTSAA 1 cut(s) 425
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 136, 264
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 289
AspLEI GCGC 2 cut(s) 144, 150
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 46, 334
AvaI CYCGRG 1 cut(s) 131
AxyI CCTNAGG 1 cut(s) 152
BauI CACGAG 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 403
BceAI ACGGC 3 cut(s) 257, 269, 352
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 6 cut(s) 180, 183, 186, 189, 340, 417
BlsI GCNGC 6 cut(s) 181, 184, 187, 190, 341, 418
Bme1390I CCNGG 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 191
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 240
Bse1I ACTGG 2 cut(s) 26, 124
Bse21I CCTNAGG 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 69, 240
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 2 cut(s) 26, 124
BseRI GAGGAG 2 cut(s) 83, 252
BseXI GCAGC 1 cut(s) 403
Bsh1236I CGCG 2 cut(s) 144, 161
Bsh1285I CGRYCG 3 cut(s) 204, 300, 357
BshFI GGCC 2 cut(s) 138, 266
BsiEI CGRYCG 3 cut(s) 204, 300, 357
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 113, 234, 267
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 69, 240
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 2 cut(s) 138, 266
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 5 cut(s) 196, 201, 276, 297, 354
BspACI CCGC 9 cut(s) 170, 179, 182, 185, 188, 212, 320, 339, 419
BspANI GGCC 2 cut(s) 138, 266
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 2 cut(s) 144, 161
BspLI GGNNCC 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 214
BsrI ACTGG 2 cut(s) 26, 124
BssMI GATC 5 cut(s) 196, 201, 276, 297, 354
BssNI GRCGYC 1 cut(s) 191
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 191
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 7 cut(s) 29, 100, 140, 146, 159, 231, 318
BstDEI CTNAG 2 cut(s) 152, 444
BstFNI CGCG 2 cut(s) 144, 161
BstHHI GCGC 2 cut(s) 144, 150
BstKTI GATC 5 cut(s) 199, 204, 279, 300, 357
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 5 cut(s) 196, 201, 276, 297, 354
BstMCI CGRYCG 3 cut(s) 204, 300, 357
BstMWI GCNNNNNNNGC 7 cut(s) 37, 154, 167, 176, 185, 188, 230
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 2 cut(s) 144, 161
BstV1I GCAGC 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 156
Bsu36I CCTNAGG 1 cut(s) 152
BsuRI GGCC 2 cut(s) 138, 266
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 7 cut(s) 29, 100, 140, 146, 159, 231, 318
CfoI GCGC 2 cut(s) 144, 150
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 3 cut(s) 46, 150, 180
Csp6I GTAC 3 cut(s) 127, 304, 331
CviAII CATG 2 cut(s) 10, 307
CviJI RGCY 9 cut(s) 73, 78, 138, 157, 224, 229, 266, 272, 416
CviKI_1 RGCY 9 cut(s) 73, 78, 138, 157, 224, 229, 266, 272, 416
CviQI GTAC 3 cut(s) 127, 304, 331
DdeI CTNAG 2 cut(s) 152, 444
DpnI GATC 5 cut(s) 198, 203, 278, 299, 356
DpnII GATC 5 cut(s) 196, 201, 276, 297, 354
DraIII CACNNNGTG 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 264
Eco72I CACGTG 1 cut(s) 69
Eco81I CCTNAGG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 289
FaeI CATG 2 cut(s) 13, 310
FaiI YATR 2 cut(s) 11, 308
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 9, 306
Fnu4HI GCNGC 6 cut(s) 180, 183, 186, 189, 340, 417
Fsp4HI GCNGC 6 cut(s) 180, 183, 186, 189, 340, 417
GlaI GCGC 2 cut(s) 143, 149
GluI GCNGC 6 cut(s) 180, 183, 186, 189, 340, 417
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 2 cut(s) 138, 266
HapII CCGG 3 cut(s) 113, 234, 267
HgaI GACGC 3 cut(s) 46, 150, 180
HhaI GCGC 2 cut(s) 144, 150
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 2 cut(s) 13, 310
Hin6I GCGC 2 cut(s) 142, 148
HinP1I GCGC 2 cut(s) 142, 148
HinfI GANTC 2 cut(s) 50, 208
HpaII CCGG 3 cut(s) 113, 234, 267
HphI GGTGA 2 cut(s) 46, 334
Hpy188I TCNGA 2 cut(s) 196, 201
Hpy188III TCNNGA 2 cut(s) 205, 391
HpyCH4IV ACGT 2 cut(s) 14, 68
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 154, 167, 176, 185, 188, 230
HpyF3I CTNAG 2 cut(s) 152, 444
HpySE526I ACGT 2 cut(s) 14, 68
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 2 cut(s) 13, 310
HspAI GCGC 2 cut(s) 142, 148
Kzo9I GATC 5 cut(s) 196, 201, 276, 297, 354
LmnI GCTCC 6 cut(s) 24, 45, 57, 96, 219, 269
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 1 cut(s) 303
MaeII ACGT 2 cut(s) 14, 68
MaeIII GTNAC 1 cut(s) 34
MalI GATC 5 cut(s) 198, 203, 278, 299, 356
MbiI CCGCTC 1 cut(s) 214
MboI GATC 5 cut(s) 196, 201, 276, 297, 354
MboII GAAGA 2 cut(s) 156, 271
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 289
MlyI GAGTC 2 cut(s) 44, 202
MnlI CCTC 9 cut(s) 95, 104, 113, 127, 140, 161, 230, 233, 397
MseI TTAA 2 cut(s) 174, 258
MslI CAYNNNNRTG 1 cut(s) 311
MspI CCGG 3 cut(s) 113, 234, 267
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 2 cut(s) 144, 161
MwoI GCNNNNNNNGC 7 cut(s) 37, 154, 167, 176, 185, 188, 230
NciI CCSGG 1 cut(s) 113
NdeII GATC 5 cut(s) 196, 201, 276, 297, 354
NlaIII CATG 2 cut(s) 13, 310
NlaIV GGNNCC 1 cut(s) 271
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 310
PaeR7I CTCGAG 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PflMI CCANNNNNTGG 1 cut(s) 69
PkrI GCNGC 6 cut(s) 181, 184, 187, 190, 341, 418
Ple19I CGATCG 3 cut(s) 204, 300, 357
PleI GAGTC 2 cut(s) 44, 202
PmaCI CACGTG 1 cut(s) 69
PmlI CACGTG 1 cut(s) 69
PpsI GAGTC 2 cut(s) 44, 202
Ppu21I YACGTR 1 cut(s) 69
PspCI CACGTG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 131
PvuI CGATCG 3 cut(s) 204, 300, 357
RsaI GTAC 3 cut(s) 128, 305, 332
RsaNI GTAC 3 cut(s) 127, 304, 331
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 2 cut(s) 174, 258
SatI GCNGC 6 cut(s) 180, 183, 186, 189, 340, 417
Sau3AI GATC 5 cut(s) 196, 201, 276, 297, 354
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 2 cut(s) 44, 202
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 62
SetI ASST 5 cut(s) 17, 36, 71, 132, 231
SfaNI GCATC 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 1 cut(s) 289
SsiI CCGC 9 cut(s) 170, 179, 182, 185, 188, 212, 320, 339, 419
StyD4I CCNGG 1 cut(s) 111
TaiI ACGT 2 cut(s) 17, 71
TaqI TCGA 3 cut(s) 48, 132, 204
TasI AATT 1 cut(s) 289
TauI GCSGC 5 cut(s) 182, 185, 188, 191, 342
Tru1I TTAA 2 cut(s) 174, 258
Tru9I TTAA 2 cut(s) 174, 258
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 69
XapI RAATTY 1 cut(s) 289
XceI RCATGY 1 cut(s) 310
XhoI CTCGAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.