FvH4_2g30830

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013368
Physical Location & Seq
Forward (+)
23783818 .. 23784252
435 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30830.t1

Sequence Viewer

Length: 435 bp
ATGATGCACATGACGTTCTACTGGAGCAGGCAGGTGACGCTCCTGTTCGACTCGTGGAGCACCACCACGTGGCTCAGCTACGCCCTCACGCTCCTCGCCTGCCTCATCGTCCCGGCGTTCTACCAGTACCTCGAGGACCTGCGCGTGCGTCTCAGGCTGGCCTCGTCGGCCGCGAAGGCGTCGGATCCGATCCAGACTCCGCTCCTGCGAGGCAAGCTCAGCGCCGGAGGGAAGTTCTCGGCGGTTAAGCTGGCCGGGGCCGTGATCTTCGCCGTGAACTCCGCGATCGGGTACATGCTGATGCTGGCGGTGATGTCGTTCAACGGCGGCGTTTTCGTGGCGATCGTGGTGGGGTTGGCGGTTGGGTATTTGTTGTTCAGGAGCGGAGAGGATGATGTTACGGTTGCGGTTGAGAATCCATGCGCTTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

145

Amino Acids

15.59

Weight (kDa)

8.5

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 4 - 126 6.1e-21 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20650
fragaria_vesca FvH4_2g30830
malus_domestica MD08G1044900.v1.1 MD08G1045600.v1.1 MD15G1048000.v1.1
prunus_persica Prupe.1G402400_v2.0.a1
pyrus_communis pycom07g27270
rosa_chinensis RchiOBHm_Chr6g0312031
rosa_laevigata RLG00000010359
rosa_multiflora Rmu_co8125252.1_g000001 Rmu_sc0005381.1_g000009
rosa_roxburghii Rroxscaffold_7G00157130
rosa_rugosa Rorug06G0392400
rosa_samantha Rh6AG508800 Rh6BG520100 Rh6CG526000 Rh6DG511500
rosa_wichuraiana Rw6G044310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
AbsI CCTCGAGG 1 cut(s) 131
Acc36I ACCTGC 2 cut(s) 22, 147
AccB7I CCANNNNNTGG 1 cut(s) 69
AccBSI CCGCTC 2 cut(s) 202, 384
AccII CGCG 3 cut(s) 144, 173, 284
AciI CCGC 9 cut(s) 171, 200, 242, 282, 308, 327, 359, 384, 407
AclWI GGATC 3 cut(s) 179, 184, 192
AcoI YGGCCR 2 cut(s) 168, 252
AcvI CACGTG 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 179
AdeI CACNNNGTG 1 cut(s) 69
AfaI GTAC 2 cut(s) 128, 293
AfiI CCNNNNNNNGG 2 cut(s) 69, 288
AgsI TTSAA 1 cut(s) 322
AluBI AGCT 3 cut(s) 78, 217, 250
AluI AGCT 3 cut(s) 78, 217, 250
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 3 cut(s) 179, 184, 192
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 4 cut(s) 159, 168, 252, 258
AspLEI GCGC 3 cut(s) 144, 224, 425
AspS9I GGNCC 2 cut(s) 136, 258
AsuC2I CCSGG 2 cut(s) 113, 256
AsuHPI GGTGA 2 cut(s) 46, 322
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 136
BamHI GGATCC 1 cut(s) 184
BauI CACGAG 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 62
BceAI ACGGC 3 cut(s) 245, 257, 340
BcnI CCSGG 2 cut(s) 113, 256
BcoDI GTCTC 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 225
BfuAI ACCTGC 2 cut(s) 22, 147
BglI GCCNNNNNGGC 2 cut(s) 167, 176
BisI GCNGC 2 cut(s) 171, 328
BlpI GCTNAGC 2 cut(s) 74, 218
BlsI GCNGC 2 cut(s) 172, 329
Bme1390I CCNGG 2 cut(s) 113, 256
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 2 cut(s) 136, 258
BmiI GGNNCC 2 cut(s) 186, 259
BmrFI CCNGG 2 cut(s) 113, 256
BmsI GCATC 1 cut(s) 291
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BpmI CTGGAG 1 cut(s) 43
Bpu1102I GCTNAGC 2 cut(s) 74, 218
BpuMI CCSGG 2 cut(s) 113, 256
BsaAI YACGTR 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 288
Bse1I ACTGG 2 cut(s) 26, 124
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 2 cut(s) 69, 288
BseMII CTCAG 3 cut(s) 88, 166, 232
BseNI ACTGG 2 cut(s) 26, 124
BseRI GAGGAG 1 cut(s) 83
BseX3I CGGCCG 1 cut(s) 168
Bsh1236I CGCG 3 cut(s) 144, 173, 284
Bsh1285I CGRYCG 3 cut(s) 171, 288, 345
BshFI GGCC 4 cut(s) 161, 170, 254, 260
BsiEI CGRYCG 3 cut(s) 171, 288, 345
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 113, 225, 255
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 69, 288
BsmAI GTCTC 1 cut(s) 155
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 4 cut(s) 161, 170, 254, 260
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 5 cut(s) 184, 189, 264, 285, 342
Bsp1720I GCTNAGC 2 cut(s) 74, 218
BspACI CCGC 9 cut(s) 171, 200, 242, 282, 308, 327, 359, 384, 407
BspANI GGCC 4 cut(s) 161, 170, 254, 260
BspCNI CTCAG 3 cut(s) 87, 165, 231
BspFNI CGCG 3 cut(s) 144, 173, 284
BspLI GGNNCC 2 cut(s) 186, 259
BspMI ACCTGC 2 cut(s) 22, 147
BspPI GGATC 3 cut(s) 179, 184, 192
BsrBI CCGCTC 2 cut(s) 202, 384
BsrI ACTGG 2 cut(s) 26, 124
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 5 cut(s) 184, 189, 264, 285, 342
BssNI GRCGYC 1 cut(s) 179
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 403
BstACI GRCGYC 1 cut(s) 179
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 7 cut(s) 29, 100, 146, 159, 215, 252, 306
BstDEI CTNAG 3 cut(s) 74, 152, 218
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 3 cut(s) 144, 173, 284
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 3 cut(s) 144, 224, 425
BstKTI GATC 5 cut(s) 187, 192, 267, 288, 345
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 5 cut(s) 184, 189, 264, 285, 342
BstMCI CGRYCG 3 cut(s) 171, 288, 345
BstMWI GCNNNNNNNGC 6 cut(s) 37, 154, 167, 176, 214, 219
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 2 cut(s) 111, 254
BstUI CGCG 3 cut(s) 144, 173, 284
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BstZI CGGCCG 1 cut(s) 168
BsuRI GGCC 4 cut(s) 161, 170, 254, 260
BtsCI GGATG 1 cut(s) 397
BveI ACCTGC 2 cut(s) 22, 147
Cac8I GCNNGC 7 cut(s) 29, 100, 146, 159, 215, 252, 306
CfoI GCGC 3 cut(s) 144, 224, 425
Cfr13I GGNCC 2 cut(s) 136, 258
CseI GACGC 3 cut(s) 46, 137, 168
Csp6I GTAC 2 cut(s) 127, 292
CviAII CATG 3 cut(s) 10, 295, 420
CviJI RGCY 9 cut(s) 73, 78, 157, 161, 170, 217, 250, 254, 260
CviKI_1 RGCY 9 cut(s) 73, 78, 157, 161, 170, 217, 250, 254, 260
CviQI GTAC 2 cut(s) 127, 292
DdeI CTNAG 3 cut(s) 74, 152, 218
DpnI GATC 5 cut(s) 186, 191, 266, 287, 344
DpnII GATC 5 cut(s) 184, 189, 264, 285, 342
DraIII CACNNNGTG 1 cut(s) 69
EaeI YGGCCR 2 cut(s) 168, 252
EagI CGGCCG 1 cut(s) 168
EclXI CGGCCG 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 136
Eco52I CGGCCG 1 cut(s) 168
Eco72I CACGTG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 3 cut(s) 13, 298, 423
FaiI YATR 3 cut(s) 11, 296, 421
FaqI GGGAC 1 cut(s) 95
FatI CATG 3 cut(s) 9, 294, 419
Fnu4HI GCNGC 2 cut(s) 171, 328
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 2 cut(s) 171, 328
GlaI GCGC 3 cut(s) 143, 223, 424
GluI GCNGC 2 cut(s) 171, 328
GsuI CTGGAG 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 4 cut(s) 161, 170, 254, 260
HapII CCGG 3 cut(s) 113, 225, 255
HgaI GACGC 3 cut(s) 46, 137, 168
HhaI GCGC 3 cut(s) 144, 224, 425
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 3 cut(s) 13, 298, 423
Hin6I GCGC 3 cut(s) 142, 222, 423
HinP1I GCGC 3 cut(s) 142, 222, 423
HinfI GANTC 3 cut(s) 50, 196, 415
HpaII CCGG 3 cut(s) 113, 225, 255
HphI GGTGA 2 cut(s) 46, 322
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 184, 189
Hpy188III TCNNGA 2 cut(s) 193, 379
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 2 cut(s) 169, 184
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 2 cut(s) 14, 68
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 6 cut(s) 37, 154, 167, 176, 214, 219
HpyF3I CTNAG 3 cut(s) 74, 152, 218
HpySE526I ACGT 2 cut(s) 14, 68
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 3 cut(s) 13, 298, 423
HspAI GCGC 3 cut(s) 142, 222, 423
Kzo9I GATC 5 cut(s) 184, 189, 264, 285, 342
LmnI GCTCC 6 cut(s) 24, 45, 57, 96, 207, 381
LweI GCATC 1 cut(s) 291
MaeII ACGT 2 cut(s) 14, 68
MaeIII GTNAC 2 cut(s) 34, 397
MalI GATC 5 cut(s) 186, 191, 266, 287, 344
MbiI CCGCTC 2 cut(s) 202, 384
MboI GATC 5 cut(s) 184, 189, 264, 285, 342
MboII GAAGA 1 cut(s) 259
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 62
MlyI GAGTC 2 cut(s) 44, 190
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 9 cut(s) 95, 104, 113, 127, 140, 172, 203, 221, 382
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 3 cut(s) 113, 225, 255
MspR9I CCNGG 2 cut(s) 113, 256
MvnI CGCG 3 cut(s) 144, 173, 284
MwoI GCNNNNNNNGC 6 cut(s) 37, 154, 167, 176, 214, 219
NciI CCSGG 2 cut(s) 113, 256
NdeII GATC 5 cut(s) 184, 189, 264, 285, 342
NlaIII CATG 3 cut(s) 13, 298, 423
NlaIV GGNNCC 2 cut(s) 186, 259
NmeAIII GCCGAG 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 298
PaeR7I CTCGAG 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 2 cut(s) 170, 342
PfeI GAWTC 1 cut(s) 415
PflMI CCANNNNNTGG 1 cut(s) 69
PkrI GCNGC 2 cut(s) 172, 329
Ple19I CGATCG 2 cut(s) 288, 345
PleI GAGTC 2 cut(s) 44, 190
PmaCI CACGTG 1 cut(s) 69
PmlI CACGTG 1 cut(s) 69
PpsI GAGTC 2 cut(s) 44, 190
Ppu21I YACGTR 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
PspCI CACGTG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 186, 259
PspPI GGNCC 2 cut(s) 136, 258
PspPPI RGGWCCY 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 131
PsrI GAACNNNNNNTAC 2 cut(s) 359, 391
PsuI RGATCY 1 cut(s) 184
PvuI CGATCG 2 cut(s) 288, 345
RsaI GTAC 2 cut(s) 128, 293
RsaNI GTAC 2 cut(s) 127, 292
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 171, 328
Sau3AI GATC 5 cut(s) 184, 189, 264, 285, 342
Sau96I GGNCC 2 cut(s) 136, 258
SchI GAGTC 2 cut(s) 44, 190
ScrFI CCNGG 2 cut(s) 113, 256
SduI GDGCHC 1 cut(s) 62
SetI ASST 8 cut(s) 17, 36, 71, 80, 132, 141, 219, 252
SfaNI GCATC 1 cut(s) 291
SfiI GGCCNNNNNGGCC 1 cut(s) 167
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 136
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SsiI CCGC 9 cut(s) 171, 200, 242, 282, 308, 327, 359, 384, 407
StyD4I CCNGG 2 cut(s) 111, 254
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 2 cut(s) 17, 71
TaqI TCGA 2 cut(s) 48, 132
TauI GCSGC 2 cut(s) 173, 330
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 136
XceI RCATGY 1 cut(s) 298
XhoI CTCGAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.