RchiOBHm_Chr6g0312031

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013368
Physical Location & Seq
Reverse (-)
68783385 .. 68784164
780 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28066

Sequence Viewer

Length: 450 bp
ATGATGCACATGACCTTCTACTGGAGCAAGCAGGTGACGCTCCTGTTCGACTCGTGGAGCACCACCACGTGGCTCGGCTACGCCCTCACGCTCCTCGCCTGCCTCATCGTCCCGGCGTTCTACCAGTACCTCGAGGGCCTGCGCGTGCGCCTCAGGCTCGTGTCTTCGGCCGGGAAGGCGGCGGCGGCGGCGGGGTCCGATCCGATCGAGACTCCGCTCCTGCGAGCCAAGCCCGCCGGAGGAGGGAAGTTCTCTGTGGTTAAGTTGGCCGGAGCCGTGATCTTCGCCGTGAATTCTGCGATCGGGTACATGCTGATGCTGGCGGTGATGTCGTACAACGGCGGCGTTTTCGTGGCGATCGTTTTGGGGTTGGCGATCGGGTATTTGTTTTTCAGGAGTGGAGATGAGGAAGTTTCGGCTGCGGTTGAAAATCCCTGTGCTTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

149

Amino Acids

15.87

Weight (kDa)

8.47

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 4 - 131 6.9e-24 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20650
fragaria_vesca FvH4_2g30830
malus_domestica MD08G1044900.v1.1 MD08G1045600.v1.1 MD15G1048000.v1.1
prunus_persica Prupe.1G402400_v2.0.a1
pyrus_communis pycom07g27270
rosa_chinensis RchiOBHm_Chr6g0312031
rosa_laevigata RLG00000010359
rosa_multiflora Rmu_co8125252.1_g000001 Rmu_sc0005381.1_g000009
rosa_roxburghii Rroxscaffold_7G00157130
rosa_rugosa Rorug06G0392400
rosa_samantha Rh6AG508800 Rh6BG520100 Rh6CG526000 Rh6DG511500
rosa_wichuraiana Rw6G044310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
AbsI CCTCGAGG 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 69
AccBSI CCGCTC 1 cut(s) 217
AccII CGCG 1 cut(s) 144
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 2 cut(s) 168, 267
AcsI RAATTY 1 cut(s) 292
AcvI CACGTG 1 cut(s) 69
AdeI CACNNNGTG 1 cut(s) 69
AfaI GTAC 3 cut(s) 128, 308, 335
AfiI CCNNNNNNNGG 4 cut(s) 21, 69, 239, 243
AgsI TTSAA 1 cut(s) 428
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 3 cut(s) 136, 168, 267
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 1 cut(s) 292
AspLEI GCGC 2 cut(s) 144, 150
AspS9I GGNCC 2 cut(s) 136, 195
AsuC2I CCSGG 2 cut(s) 113, 172
AsuHPI GGTGA 2 cut(s) 46, 337
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 195
AxyI CCTNAGG 1 cut(s) 152
BauI CACGAG 2 cut(s) 52, 158
BbrPI CACGTG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 406
BceAI ACGGC 3 cut(s) 260, 272, 355
BcnI CCSGG 2 cut(s) 113, 172
BcoDI GTCTC 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 22
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 6 cut(s) 180, 183, 186, 189, 343, 420
BlsI GCNGC 6 cut(s) 181, 184, 187, 190, 344, 421
Bme1390I CCNGG 2 cut(s) 113, 172
Bme18I GGWCC 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 2 cut(s) 136, 195
BmiI GGNNCC 2 cut(s) 196, 274
BmrFI CCNGG 2 cut(s) 113, 172
BmsI GCATC 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 43
BpuMI CCSGG 2 cut(s) 113, 172
BsaAI YACGTR 1 cut(s) 69
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 69, 239, 243
Bse1I ACTGG 2 cut(s) 26, 124
Bse21I CCTNAGG 1 cut(s) 152
BseLI CCNNNNNNNGG 4 cut(s) 21, 69, 239, 243
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 2 cut(s) 26, 124
BseRI GAGGAG 2 cut(s) 83, 255
BseX3I CGGCCG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 5 cut(s) 171, 207, 303, 360, 378
BshFI GGCC 3 cut(s) 138, 170, 269
BsiEI CGRYCG 5 cut(s) 171, 207, 303, 360, 378
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 4 cut(s) 113, 171, 237, 270
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 4 cut(s) 21, 69, 239, 243
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 3 cut(s) 138, 170, 269
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 6 cut(s) 199, 204, 279, 300, 357, 375
BspANI GGCC 3 cut(s) 138, 170, 269
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 196, 274
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 217
BsrI ACTGG 2 cut(s) 26, 124
BssMI GATC 6 cut(s) 199, 204, 279, 300, 357, 375
BssSI CACGAG 2 cut(s) 52, 158
Bst2BI CACGAG 2 cut(s) 52, 158
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 7 cut(s) 29, 100, 140, 146, 225, 234, 321
BstDEI CTNAG 2 cut(s) 152, 447
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 2 cut(s) 144, 150
BstKTI GATC 6 cut(s) 202, 207, 282, 303, 360, 378
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 6 cut(s) 199, 204, 279, 300, 357, 375
BstMCI CGRYCG 5 cut(s) 171, 207, 303, 360, 378
BstMWI GCNNNNNNNGC 7 cut(s) 37, 154, 176, 185, 188, 229, 233
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 111, 170
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 406
BstV2I GAAGAC 1 cut(s) 156
BstZI CGGCCG 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 152
BsuRI GGCC 3 cut(s) 138, 170, 269
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 7 cut(s) 29, 100, 140, 146, 225, 234, 321
CfoI GCGC 2 cut(s) 144, 150
Cfr13I GGNCC 2 cut(s) 136, 195
CseI GACGC 1 cut(s) 46
Csp6I GTAC 3 cut(s) 127, 307, 334
CviAII CATG 2 cut(s) 10, 310
CviQI GTAC 3 cut(s) 127, 307, 334
DdeI CTNAG 2 cut(s) 152, 447
DpnI GATC 6 cut(s) 201, 206, 281, 302, 359, 377
DpnII GATC 6 cut(s) 199, 204, 279, 300, 357, 375
DraIII CACNNNGTG 1 cut(s) 69
EaeI YGGCCR 2 cut(s) 168, 267
EagI CGGCCG 1 cut(s) 168
EclXI CGGCCG 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 195
Eco52I CGGCCG 1 cut(s) 168
Eco72I CACGTG 1 cut(s) 69
Eco81I CCTNAGG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 292
FaeI CATG 2 cut(s) 13, 313
FaiI YATR 2 cut(s) 11, 311
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 9, 309
FauI CCCGC 2 cut(s) 184, 241
Fnu4HI GCNGC 6 cut(s) 180, 183, 186, 189, 343, 420
Fsp4HI GCNGC 6 cut(s) 180, 183, 186, 189, 343, 420
GlaI GCGC 2 cut(s) 143, 149
GluI GCNGC 6 cut(s) 180, 183, 186, 189, 343, 420
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 3 cut(s) 138, 170, 269
HapII CCGG 4 cut(s) 113, 171, 237, 270
HgaI GACGC 1 cut(s) 46
HhaI GCGC 2 cut(s) 144, 150
Hin1II CATG 2 cut(s) 13, 313
Hin6I GCGC 2 cut(s) 142, 148
HinP1I GCGC 2 cut(s) 142, 148
HinfI GANTC 2 cut(s) 50, 211
HpaII CCGG 4 cut(s) 113, 171, 237, 270
HphI GGTGA 2 cut(s) 46, 337
Hpy188I TCNGA 2 cut(s) 199, 204
Hpy188III TCNNGA 2 cut(s) 208, 394
HpyAV CCTTC 2 cut(s) 25, 169
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 154, 176, 185, 188, 229, 233
HpyF3I CTNAG 2 cut(s) 152, 447
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 2 cut(s) 13, 313
HspAI GCGC 2 cut(s) 142, 148
Kzo9I GATC 6 cut(s) 199, 204, 279, 300, 357, 375
LmnI GCTCC 6 cut(s) 24, 45, 57, 96, 222, 272
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 1 cut(s) 306
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 34
MalI GATC 6 cut(s) 201, 206, 281, 302, 359, 377
MbiI CCGCTC 1 cut(s) 217
MboI GATC 6 cut(s) 199, 204, 279, 300, 357, 375
MboII GAAGA 2 cut(s) 156, 274
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 292
MlyI GAGTC 2 cut(s) 44, 205
MnlI CCTC 9 cut(s) 95, 104, 113, 127, 140, 161, 233, 236, 400
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 314
MspI CCGG 4 cut(s) 113, 171, 237, 270
MspR9I CCNGG 2 cut(s) 113, 172
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 7 cut(s) 37, 154, 176, 185, 188, 229, 233
NciI CCSGG 2 cut(s) 113, 172
NdeII GATC 6 cut(s) 199, 204, 279, 300, 357, 375
NlaIII CATG 2 cut(s) 13, 313
NlaIV GGNNCC 2 cut(s) 196, 274
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 313
PaeR7I CTCGAG 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PflMI CCANNNNNTGG 1 cut(s) 69
PkrI GCNGC 6 cut(s) 181, 184, 187, 190, 344, 421
Ple19I CGATCG 4 cut(s) 207, 303, 360, 378
PleI GAGTC 2 cut(s) 44, 205
PmaCI CACGTG 1 cut(s) 69
PmlI CACGTG 1 cut(s) 69
PpsI GAGTC 2 cut(s) 44, 205
Ppu21I YACGTR 1 cut(s) 69
PspCI CACGTG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 196, 274
PspPI GGNCC 2 cut(s) 136, 195
PspXI VCTCGAGB 1 cut(s) 131
PvuI CGATCG 4 cut(s) 207, 303, 360, 378
RsaI GTAC 3 cut(s) 128, 308, 335
RsaNI GTAC 3 cut(s) 127, 307, 334
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 6 cut(s) 180, 183, 186, 189, 343, 420
Sau3AI GATC 6 cut(s) 199, 204, 279, 300, 357, 375
Sau96I GGNCC 2 cut(s) 136, 195
SchI GAGTC 2 cut(s) 44, 205
ScrFI CCNGG 2 cut(s) 113, 172
SduI GDGCHC 1 cut(s) 62
SetI ASST 4 cut(s) 17, 36, 71, 132
SfaNI GCATC 1 cut(s) 306
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 195
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 1 cut(s) 292
StyD4I CCNGG 2 cut(s) 111, 170
TaiI ACGT 1 cut(s) 71
TaqI TCGA 3 cut(s) 48, 132, 207
TasI AATT 1 cut(s) 292
TauI GCSGC 5 cut(s) 182, 185, 188, 191, 345
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 419
Tsp45I GTSAC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 1 cut(s) 292
XceI RCATGY 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.