Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008735

Physical Location & Seq

Genomic Coordinates Forward (+)

7277182 .. 7280344

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGGGAGCGGGAGAGACGACGACGTCGGAGGGGCATTTGACTTCGGCAGCAGCTTTTGTGGAAGGGGGAATTCAAGATGCTTGTGATGATGCTTGTAGCATTTGTCTTGAATCCTTCTGCGAAAGCGATCCTTCTACTTTGACTAGTTGCAAGCATGAGTATCATCTTCAATGCATTCTTGAGTGGTGTCAAAGAAGCTCACAGTGCCCTATGTGTTGGCAATCAATTAGTCTCAAAGACCCCACAAGTCAGGAGTTGCTTGAGGCTGTGGAACAGGAGAGGAATTTCCGCTTCAATCCAACTAGAAATGCCACCATATTTCGTCATCCAACTCTTGGTGATTTTGAATTACAACATCTTCCAGTGGGGGTGGATAATGCTGAGATTGAAGAACGAATCATTCAGCACTTGGCTGCTGCTGCTGCTATGGGACGAGCAAGACATGGGGTAAGAAGGGAAGGCCACAGAAGCAGGTCGTCAAGTCAAGGACATCAACAGTTCATGGTGTTCTCTTCGCAACCTAATGCTTCTTCTCCTCCACCTCATCCTCCCATGCCTTCTTCTCCATCTCAGAGAGATGAGAGTGACACAGTGTCAAACCTTCCTCACAATGCTTTAGGGGAGGGTTCTCATCAGTCAAACACGCAGCCACCAACTTCTTCTCATCCCCGCCAGGTTTCTCCCTCAGCATCTGATTCAAACAGCAGGCCTCTTAATCAATCTTCCCCAAGTGAACAAGATAGAGCTGGACCATCAGAACTCCAGTCATTTTCGGAATCACTTAAGTCTCGATTAAACGCTGTCTCCACGAGATACAAAGAATCGATATCAAAGAATACAAGGAACTGGAAAGATAGACTTTTTTCTCGCAACACGTCCATGGCAGATCTTGGCTCTGAGGTTAAAAGAGAGGTCAGTGCCGGAATCGCCACTGTGTCCCGCATGATGGAACGTTTAGAAACGAGAGAAAACAGTAGACCCAGCACTGCATCTGTATCAGATGTCTCTGAAAATCACACTCCTGAAACAAACAATGAGCACAATAGAGCAGCAGCGGGTGATGAACATTCTGTGAATGAAAGAGGTGTTAAAGAAACATGTGCGACTGGTTCTGGTTCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

375

Amino Acids

41.03

Weight (kDa)

5.67

Isoelectric Point (pI)

62.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22000 AT5G22000 AT5G22000 AT5G22000
fragaria_vesca	FvH4_3g26760 FvH4_3g26760
malus_domestica	MD03G1160200.v1.1 MD11G1176400.v1.1
prunus_persica	Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1 Prupe.6G148500_v2.0.a1
pyrus_communis	pycom03g11270 pycom11g15060
rosa_chinensis	RchiOBHm_Chr5g0049191
rosa_laevigata	RLG00000034598
rosa_multiflora	Rmu_sc0001440.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032540
rosa_rugosa	Rorug05G0245500 Rorug05G0245600.1
rosa_samantha	Rh5AG323500 Rh5BG333900 Rh5DG345600
rosa_wichuraiana	Rw5G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	25
AatII	GACGTC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	979
AciI	CCGC	5 cut(s)	11, 292, 673, 943, 1058
AclI	AACGTT	1 cut(s)	955
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	2 cut(s)	72, 286
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	338, 949
AflII	CTTAAG	1 cut(s)	785
AflIII	ACRYGT	2 cut(s)	876, 1100
AgsI	TTSAA	8 cut(s)	77, 113, 173, 298, 350, 392, 702, 1122
AhdI	GACNNNNNGTC	1 cut(s)	595
AhlI	ACTAGT	1 cut(s)	146
AjiI	CACGTC	1 cut(s)	879
AjnI	CCWGG	1 cut(s)	675
AluBI	AGCT	4 cut(s)	56, 201, 749, 1125
AluI	AGCT	4 cut(s)	56, 201, 749, 1125
Alw21I	GWGCWC	1 cut(s)	1044
Alw26I	GTCTC	5 cut(s)	11, 239, 795, 811, 1012
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	2 cut(s)	463, 710
ApeKI	GCWGC	9 cut(s)	50, 53, 416, 419, 422, 425, 649, 1052, 1055
ApoI	RAATTY	2 cut(s)	72, 286
AspS9I	GGNCC	1 cut(s)	752
AsuHPI	GGTGA	2 cut(s)	353, 1073
AvaII	GGWCC	1 cut(s)	752
BaeGI	GKGCMC	1 cut(s)	212
BauI	CACGAG	1 cut(s)	811
Bbv12I	GWGCWC	1 cut(s)	1044
BbvCI	CCTCAGC	1 cut(s)	688
BbvI	GCAGC	9 cut(s)	62, 65, 403, 406, 409, 412, 661, 1064, 1067
BccI	CCATC	3 cut(s)	577, 763, 943
BciT130I	CCWGG	1 cut(s)	677
BcoDI	GTCTC	5 cut(s)	11, 239, 795, 811, 1012
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	2 cut(s)	147, 306
BfrI	CTTAAG	1 cut(s)	785
BfuAI	ACCTGC	1 cut(s)	465
BglII	AGATCT	1 cut(s)	889
BisI	GCNGC	9 cut(s)	51, 54, 417, 420, 423, 426, 650, 1053, 1056
BlsI	GCNGC	9 cut(s)	52, 55, 418, 421, 424, 427, 651, 1054, 1057
Bme1390I	CCNGG	1 cut(s)	677
Bme18I	GGWCC	1 cut(s)	752
BmeRI	GACNNNNNGTC	1 cut(s)	595
BmgBI	CACGTC	1 cut(s)	879
BmgT120I	GGNCC	1 cut(s)	752
BmrFI	CCNGG	1 cut(s)	677
BmsI	GCATC	4 cut(s)	70, 82, 701, 1001
BpmI	CTGGAG	1 cut(s)	749
Bpu10I	CCTNAGC	1 cut(s)	688
BpuEI	CTTGAG	2 cut(s)	203, 284
Bsa29I	ATCGAT	1 cut(s)	827
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	882
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 949
Bse1I	ACTGG	4 cut(s)	365, 766, 854, 1114
BseBI	CCWGG	1 cut(s)	677
BseCI	ATCGAT	1 cut(s)	827
BseDI	CCNNGG	1 cut(s)	882
BseGI	GGATG	3 cut(s)	328, 547, 667
BseLI	CCNNNNNNNGG	2 cut(s)	338, 949
BseMII	CTCAG	4 cut(s)	375, 587, 702, 891
BseNI	ACTGG	4 cut(s)	365, 766, 854, 1114
BseRI	GAGGAG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	9 cut(s)	62, 65, 403, 406, 409, 412, 661, 1064, 1067
BseYI	CCCAGC	1 cut(s)	983
BshFI	GGCC	2 cut(s)	465, 712
BshVI	ATCGAT	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	1044
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	2 cut(s)	447, 925
BslI	CCNNNNNNNGG	2 cut(s)	338, 949
BsmAI	GTCTC	5 cut(s)	11, 239, 795, 811, 1012
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	2 cut(s)	447, 925
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	465, 712
Bsp1286I	GDGCHC	2 cut(s)	212, 1044
Bsp143I	GATC	2 cut(s)	130, 889
Bsp19I	CCATGG	1 cut(s)	882
BspACI	CCGC	5 cut(s)	11, 292, 673, 943, 1058
BspANI	GGCC	2 cut(s)	465, 712
BspCNI	CTCAG	4 cut(s)	376, 586, 701, 892
BspDI	ATCGAT	1 cut(s)	827
BspMI	ACCTGC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	785
BsrBI	CCGCTC	1 cut(s)	11
BsrI	ACTGG	4 cut(s)	365, 766, 854, 1114
BssECI	CCNNGG	1 cut(s)	882
BssMI	GATC	2 cut(s)	130, 889
BssNI	GRCGYC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	811
BssT1I	CCWWGG	1 cut(s)	882
Bst2BI	CACGAG	1 cut(s)	811
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	5 cut(s)	207, 501, 595, 937, 977
Bst6I	CTCTTC	1 cut(s)	520
BstACI	GRCGYC	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	785
BstC8I	GCNNGC	2 cut(s)	155, 710
BstDEI	CTNAG	4 cut(s)	384, 573, 688, 900
BstDSI	CCRYGG	1 cut(s)	882
BstF5I	GGATG	3 cut(s)	328, 547, 667
BstKTI	GATC	2 cut(s)	133, 892
BstMAI	GTCTC	5 cut(s)	11, 239, 795, 811, 1012
BstMBI	GATC	2 cut(s)	130, 889
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 422, 425, 471, 929
BstNI	CCWGG	1 cut(s)	677
BstNSI	RCATGY	1 cut(s)	1104
BstSCI	CCNGG	1 cut(s)	675
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	9 cut(s)	62, 65, 403, 406, 409, 412, 661, 1064, 1067
BstX2I	RGATCY	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	889
Bsu15I	ATCGAT	1 cut(s)	827
BsuRI	GGCC	2 cut(s)	465, 712
BsuTUI	ATCGAT	1 cut(s)	827
BtgI	CCRYGG	1 cut(s)	882
BtrI	CACGTC	1 cut(s)	879
BtsCI	GGATG	3 cut(s)	328, 547, 667
BtsI	GCAGTG	1 cut(s)	987
BtsIMutI	CAGTG	6 cut(s)	212, 372, 600, 925, 933, 987
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	155, 710
CaiI	CAGNNNCTG	1 cut(s)	695
Cfr13I	GGNCC	1 cut(s)	752
ClaI	ATCGAT	1 cut(s)	827
CviAII	CATG	7 cut(s)	158, 446, 505, 556, 883, 946, 1101
DdeI	CTNAG	4 cut(s)	384, 573, 688, 900
DpnI	GATC	2 cut(s)	132, 891
DpnII	GATC	2 cut(s)	130, 889
DrdI	GACNNNNNNGTC	1 cut(s)	25
DriI	GACNNNNNGTC	1 cut(s)	595
DseDI	GACNNNNNNGTC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	520
Eam1105I	GACNNNNNGTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	882
Eco147I	AGGCCT	1 cut(s)	712
Eco32I	GATATC	1 cut(s)	831
Eco47I	GGWCC	1 cut(s)	752
EcoRI	GAATTC	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	675
EcoRV	GATATC	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	882
EcoT22I	ATGCAT	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	882
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	7 cut(s)	161, 449, 508, 559, 886, 949, 1104
FalI	AAGNNNNNCTT	4 cut(s)	118, 150, 846, 878
FaqI	GGGAC	2 cut(s)	447, 925
FatI	CATG	7 cut(s)	157, 445, 504, 555, 882, 945, 1100
FauI	CCCGC	4 cut(s)	4, 680, 950, 1051
FblI	GTMKAC	1 cut(s)	979
Fnu4HI	GCNGC	9 cut(s)	51, 54, 417, 420, 423, 426, 650, 1053, 1056
FokI	GGATG	3 cut(s)	315, 534, 654
Fsp4HI	GCNGC	9 cut(s)	51, 54, 417, 420, 423, 426, 650, 1053, 1056
FspBI	CTAG	2 cut(s)	147, 306
GluI	GCNGC	9 cut(s)	51, 54, 417, 420, 423, 426, 650, 1053, 1056
GsaI	CCCAGC	1 cut(s)	987
GsuI	CTGGAG	1 cut(s)	749
HaeIII	GGCC	2 cut(s)	465, 712
HapII	CCGG	1 cut(s)	924
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	7 cut(s)	161, 449, 508, 559, 886, 949, 1104
HinfI	GANTC	6 cut(s)	113, 399, 698, 779, 824, 927
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	2 cut(s)	353, 1073
Hpy166II	GTNNAC	2 cut(s)	737, 980
Hpy188I	TCNGA	8 cut(s)	31, 576, 697, 760, 778, 901, 1003, 1012
Hpy188III	TCNNGA	6 cut(s)	77, 110, 182, 254, 792, 1025
Hpy8I	GTNNAC	2 cut(s)	737, 980
Hpy99I	CGWCG	3 cut(s)	25, 28, 31
HpyAV	CCTTC	7 cut(s)	59, 127, 144, 450, 455, 570, 614
HpyCH4III	ACNGT	5 cut(s)	207, 501, 595, 937, 977
HpyCH4IV	ACGT	3 cut(s)	26, 878, 955
HpyCH4V	TGCA	3 cut(s)	153, 177, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 422, 425, 471, 929
HpyF3I	CTNAG	4 cut(s)	384, 573, 688, 900
HpySE526I	ACGT	3 cut(s)	26, 878, 955
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	7 cut(s)	161, 449, 508, 559, 886, 949, 1104
Kzo9I	GATC	2 cut(s)	130, 889
LmnI	GCTCC	1 cut(s)	8
Lsp1109I	GCAGC	9 cut(s)	62, 65, 403, 406, 409, 412, 661, 1064, 1067
LweI	GCATC	4 cut(s)	70, 82, 701, 1001
MaeI	CTAG	2 cut(s)	147, 306
MaeII	ACGT	3 cut(s)	26, 878, 955
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	2 cut(s)	132, 891
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	2 cut(s)	130, 889
MboII	GAAGA	8 cut(s)	161, 353, 404, 507, 525, 555, 654, 717
MflI	RGATCY	1 cut(s)	889
MhlI	GDGCHC	2 cut(s)	212, 1044
MluCI	AATT	4 cut(s)	72, 228, 286, 350
MmeI	TCCRAC	3 cut(s)	9, 326, 356
Mph1103I	ATGCAT	1 cut(s)	179
MseI	TTAA	5 cut(s)	717, 786, 797, 906, 1092
MslI	CAYNNNNRTG	1 cut(s)	881
MspA1I	CMGCKG	1 cut(s)	1058
MspCI	CTTAAG	1 cut(s)	785
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	1 cut(s)	677
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	5 cut(s)	207, 422, 425, 471, 929
NcoI	CCATGG	1 cut(s)	882
NdeII	GATC	2 cut(s)	130, 889
NlaIII	CATG	7 cut(s)	161, 449, 508, 559, 886, 949, 1104
NmuCI	GTSAC	1 cut(s)	587
NsiI	ATGCAT	1 cut(s)	179
NspI	RCATGY	1 cut(s)	1104
PceI	AGGCCT	1 cut(s)	712
PciI	ACATGT	1 cut(s)	1100
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	6 cut(s)	113, 399, 698, 779, 824, 927
PflFI	GACNNNGTC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	9 cut(s)	52, 55, 418, 421, 424, 427, 651, 1054, 1057
PscI	ACATGT	1 cut(s)	1100
Psp1406I	AACGTT	1 cut(s)	955
Psp6I	CCWGG	1 cut(s)	675
PspFI	CCCAGC	1 cut(s)	983
PspGI	CCWGG	1 cut(s)	675
PspPI	GGNCC	1 cut(s)	752
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	889
PsyI	GACNNNGTC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	881
SaqAI	TTAA	5 cut(s)	717, 786, 797, 906, 1092
SatI	GCNGC	9 cut(s)	51, 54, 417, 420, 423, 426, 650, 1053, 1056
Sau3AI	GATC	2 cut(s)	130, 889
Sau96I	GGNCC	1 cut(s)	752
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	2 cut(s)	212, 1044
SfaNI	GCATC	4 cut(s)	70, 82, 701, 1001
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	1 cut(s)	881
SmlI	CTYRAG	3 cut(s)	182, 263, 785
SmoI	CTYRAG	3 cut(s)	182, 263, 785
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	4 cut(s)	72, 228, 286, 350
SseBI	AGGCCT	1 cut(s)	712
SsiI	CCGC	5 cut(s)	11, 292, 673, 943, 1058
SspMI	CTAG	2 cut(s)	147, 306
StuI	AGGCCT	1 cut(s)	712
StyD4I	CCNGG	1 cut(s)	675
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	5 cut(s)	207, 501, 595, 937, 977
TaiI	ACGT	3 cut(s)	29, 881, 958
TaqI	TCGA	2 cut(s)	793, 827
TasI	AATT	4 cut(s)	72, 228, 286, 350
TfiI	GAWTC	6 cut(s)	113, 399, 698, 779, 824, 927
Tru1I	TTAA	5 cut(s)	717, 786, 797, 906, 1092
Tru9I	TTAA	5 cut(s)	717, 786, 797, 906, 1092
TscAI	CASTG	6 cut(s)	212, 372, 600, 925, 940, 994
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	9 cut(s)	50, 53, 416, 419, 422, 425, 649, 1052, 1055
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	3 cut(s)	493, 1080, 1095
TspRI	CASTG	6 cut(s)	212, 372, 600, 925, 940, 994
Tth111I	GACNNNGTC	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	338
Vha464I	CTTAAG	1 cut(s)	785
VpaK11BI	GGWCC	1 cut(s)	752
XapI	RAATTY	2 cut(s)	72, 286
XceI	RCATGY	1 cut(s)	1104
XmiI	GTMKAC	1 cut(s)	979
XspI	CTAG	2 cut(s)	147, 306
ZraI	GACGTC	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.